Query gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 318
No_of_seqs 153 out of 2019
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 16:44:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780369.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2025 FixB Electron transfer 100.0 0 0 679.4 28.5 305 6-318 1-310 (313)
2 PRK11916 electron transfer fla 100.0 0 0 668.1 30.2 301 2-318 3-310 (312)
3 PRK03363 fixB putative electro 100.0 0 0 656.1 28.8 301 2-318 3-311 (313)
4 KOG3954 consensus 100.0 0 0 612.8 19.9 309 7-318 22-333 (336)
5 cd01715 ETF_alpha The electron 100.0 2.3E-38 5.9E-43 264.2 18.7 165 7-172 1-167 (168)
6 pfam00766 ETF_alpha Electron t 100.0 2.8E-38 7E-43 263.8 8.4 86 196-282 1-86 (86)
7 pfam01012 ETF Electron transfe 100.0 7.6E-30 1.9E-34 210.0 16.7 152 7-159 1-161 (161)
8 cd01985 ETF The electron trans 100.0 4.9E-27 1.3E-31 192.2 16.5 157 7-164 1-170 (181)
9 PRK12342 putative electron tra 99.0 1.7E-07 4.4E-12 67.8 19.6 126 31-160 48-184 (254)
10 cd01714 ETF_beta The electron 98.9 1.6E-07 4E-12 68.1 13.5 131 26-160 44-183 (202)
11 COG2086 FixA Electron transfer 98.7 1.4E-06 3.5E-11 62.1 13.9 138 18-159 34-186 (260)
12 PRK03359 putative electron tra 98.6 1.6E-06 4.1E-11 61.7 13.1 137 19-159 34-187 (256)
13 PRK08322 acetolactate synthase 97.4 0.0008 2E-08 44.5 7.4 117 199-318 193-324 (547)
14 PRK09124 pyruvate dehydrogenas 97.3 0.001 2.6E-08 43.8 7.2 113 199-318 198-323 (574)
15 PRK07979 acetolactate synthase 97.3 0.0012 3.1E-08 43.3 7.5 117 199-318 203-335 (574)
16 pfam00205 TPP_enzyme_M Thiamin 97.3 0.00099 2.5E-08 43.9 6.7 113 199-314 8-138 (138)
17 PRK08617 acetolactate synthase 97.3 0.013 3.4E-07 36.7 12.3 116 199-318 198-330 (552)
18 PRK06048 acetolactate synthase 97.2 0.0017 4.4E-08 42.4 7.1 116 199-318 204-336 (562)
19 PRK07789 acetolactate synthase 97.2 0.0029 7.4E-08 40.9 8.0 117 199-318 228-360 (612)
20 PRK06154 hypothetical protein; 97.1 0.0015 3.9E-08 42.7 6.0 117 199-318 203-333 (556)
21 PRK08978 acetolactate synthase 97.0 0.0028 7.3E-08 41.0 6.9 117 199-318 193-325 (548)
22 PRK11269 glyoxylate carboligas 97.0 0.0024 6.1E-08 41.4 6.4 116 199-317 200-332 (591)
23 TIGR03457 sulphoacet_xsc sulfo 96.9 0.003 7.7E-08 40.8 6.1 117 199-318 193-328 (579)
24 PRK07092 benzoylformate decarb 96.9 0.0032 8.1E-08 40.7 6.1 116 199-318 194-326 (521)
25 PRK08155 acetolactate synthase 96.9 0.0056 1.4E-07 39.1 7.2 275 31-318 24-340 (564)
26 PRK07525 sulfoacetaldehyde ace 96.8 0.0055 1.4E-07 39.2 6.6 117 199-318 197-332 (589)
27 PRK06456 acetolactate synthase 96.7 0.0055 1.4E-07 39.2 6.2 117 199-318 204-337 (572)
28 PRK07418 acetolactate synthase 96.7 0.0069 1.8E-07 38.5 6.6 114 199-318 221-353 (615)
29 PRK06965 acetolactate synthase 96.7 0.0039 1E-07 40.1 5.3 115 199-318 218-351 (587)
30 PRK08611 pyruvate oxidase; Pro 96.7 0.0076 1.9E-07 38.2 6.7 112 199-318 200-325 (576)
31 PRK07282 acetolactate synthase 96.6 0.01 2.6E-07 37.5 7.0 276 29-317 19-338 (566)
32 PRK06112 acetolactate synthase 96.6 0.0082 2.1E-07 38.1 6.5 116 199-318 213-349 (581)
33 PRK08527 acetolactate synthase 96.5 0.0091 2.3E-07 37.8 6.4 116 199-318 201-333 (560)
34 PRK06546 pyruvate dehydrogenas 96.4 0.024 6.1E-07 35.1 7.7 112 199-318 198-322 (578)
35 PRK08327 acetolactate synthase 96.3 0.019 4.9E-07 35.7 6.9 116 199-318 217-343 (568)
36 PRK06276 acetolactate synthase 96.3 0.016 4E-07 36.3 6.4 115 199-318 200-332 (586)
37 PRK08979 acetolactate synthase 96.3 0.016 4.1E-07 36.2 6.4 116 199-318 203-335 (572)
38 KOG3180 consensus 96.3 0.07 1.8E-06 32.1 9.6 119 30-152 54-182 (254)
39 PRK07710 acetolactate synthase 96.2 0.023 5.8E-07 35.2 7.0 117 199-318 212-344 (571)
40 CHL00099 ilvB acetohydroxyacid 96.2 0.015 3.7E-07 36.5 5.6 117 199-318 211-343 (588)
41 PRK07524 hypothetical protein; 96.1 0.025 6.3E-07 35.0 6.6 114 199-318 198-328 (534)
42 PRK06882 acetolactate synthase 96.0 0.021 5.3E-07 35.5 6.0 113 202-318 208-335 (574)
43 COG0028 IlvB Thiamine pyrophos 96.0 0.041 1.1E-06 33.6 7.3 264 41-318 23-328 (550)
44 PRK08266 hypothetical protein; 95.9 0.023 5.9E-07 35.2 5.6 114 199-318 199-321 (531)
45 PRK06466 acetolactate synthase 95.8 0.023 5.9E-07 35.2 5.3 116 199-318 203-335 (574)
46 PRK08199 acetolactate synthase 95.7 0.18 4.7E-06 29.5 12.7 115 199-317 195-329 (553)
47 PRK06725 acetolactate synthase 95.6 0.043 1.1E-06 33.5 6.2 116 199-317 211-342 (570)
48 PRK09107 acetolactate synthase 95.6 0.033 8.5E-07 34.2 5.4 116 199-318 208-342 (594)
49 PRK00481 NAD-dependent deacety 95.4 0.042 1.1E-06 33.5 5.6 58 259-317 177-239 (239)
50 TIGR03254 oxalate_oxc oxalyl-C 95.3 0.045 1.2E-06 33.3 5.5 114 199-318 203-329 (554)
51 PRK09259 putative oxalyl-CoA d 95.0 0.074 1.9E-06 32.0 5.9 117 199-318 213-339 (572)
52 PRK06457 pyruvate dehydrogenas 94.6 0.15 3.9E-06 29.9 6.5 110 199-316 193-316 (549)
53 cd01408 SIRT1 SIRT1: Eukaryoti 94.4 0.082 2.1E-06 31.7 4.7 55 259-314 175-235 (235)
54 cd01412 SIRT5_Af1_CobB SIRT5_A 94.2 0.11 2.7E-06 30.9 5.1 56 259-315 164-224 (224)
55 PRK08273 pyruvate decarboxylas 94.2 0.18 4.5E-06 29.6 6.1 114 199-318 205-332 (597)
56 PRK05858 hypothetical protein; 94.0 0.13 3.3E-06 30.4 5.0 117 199-318 202-326 (543)
57 PRK05333 NAD-dependent deacety 92.2 0.4 1E-05 27.3 5.3 59 259-318 214-277 (285)
58 PRK07064 hypothetical protein; 90.6 1.4 3.6E-05 23.8 10.9 113 199-318 200-326 (544)
59 TIGR03394 indol_phenyl_DC indo 85.9 1.8 4.5E-05 23.2 4.8 113 199-314 198-327 (535)
60 COG0846 SIR2 NAD-dependent pro 80.9 1.1 2.9E-05 24.5 2.2 59 259-318 182-245 (250)
61 TIGR01768 GGGP-family geranylg 80.3 4.1 0.00011 20.8 4.9 27 203-229 195-221 (242)
62 PRK04169 geranylgeranylglycery 77.5 5.7 0.00015 20.0 4.9 18 199-218 183-200 (229)
63 COG2120 Uncharacterized protei 75.9 6.4 0.00016 19.6 7.4 97 3-100 8-121 (237)
64 KOG1185 consensus 70.6 3.5 9E-05 21.3 2.4 39 279-318 301-341 (571)
65 pfam09445 Methyltransf_15 RNA 68.7 4.7 0.00012 20.5 2.7 46 25-71 14-60 (165)
66 TIGR02915 PEP_resp_reg putativ 65.9 3.7 9.5E-05 21.1 1.8 60 80-139 156-227 (451)
67 pfam01884 PcrB PcrB family. Th 65.5 11 0.00028 18.2 4.7 18 199-218 180-197 (231)
68 cd05013 SIS_RpiR RpiR-like pro 64.8 11 0.00029 18.1 5.0 98 199-308 10-114 (139)
69 PRK00211 hypothetical protein; 64.3 11 0.00029 18.0 5.9 67 6-72 1-86 (119)
70 pfam07071 DUF1341 Protein of u 57.6 8.7 0.00022 18.8 2.4 31 90-120 59-89 (218)
71 TIGR00513 accA acetyl-CoA carb 57.5 3.8 9.7E-05 21.1 0.6 75 4-82 158-242 (329)
72 TIGR00118 acolac_lg acetolacta 56.8 5.9 0.00015 19.9 1.5 246 63-318 46-352 (593)
73 PRK10494 hypothetical protein; 53.7 15 0.00039 17.3 3.1 11 202-212 122-132 (259)
74 PRK12319 acetyl-CoA carboxylas 53.6 17 0.00044 16.9 4.6 21 70-90 76-98 (256)
75 cd01411 SIR2H SIR2H: Uncharact 50.6 17 0.00044 16.9 3.0 49 258-307 170-222 (225)
76 pfam02585 PIG-L GlcNAc-PI de-N 50.1 20 0.0005 16.5 7.7 89 9-98 1-106 (111)
77 cd01409 SIRT4 SIRT4: Eukaryoti 49.4 20 0.00052 16.5 3.6 52 259-311 204-260 (260)
78 CHL00198 accA acetyl-CoA carbo 47.7 21 0.00055 16.3 5.0 87 70-157 132-243 (322)
79 COG1646 Predicted phosphate-bi 43.2 25 0.00064 15.9 4.4 64 35-100 15-82 (240)
80 COG3660 Predicted nucleoside-d 42.9 25 0.00065 15.8 3.7 36 6-45 1-37 (329)
81 cd02173 ECT CTP:phosphoethanol 42.3 14 0.00034 17.6 1.4 35 10-44 5-39 (152)
82 COG0825 AccA Acetyl-CoA carbox 42.0 4.9 0.00012 20.4 -0.9 86 70-156 128-238 (317)
83 TIGR00761 argB acetylglutamate 39.7 13 0.00033 17.7 1.0 26 97-122 173-201 (254)
84 cd05014 SIS_Kpsf KpsF-like pro 39.4 29 0.00073 15.5 5.4 93 203-307 2-100 (128)
85 COG2222 AgaS Predicted phospho 37.3 31 0.00079 15.3 7.9 26 197-227 196-221 (340)
86 PRK05724 acetyl-CoA carboxylas 36.9 31 0.0008 15.2 6.1 87 70-157 128-239 (318)
87 PRK11891 aspartate carbamoyltr 36.1 7.8 0.0002 19.1 -0.6 21 285-305 369-389 (430)
88 pfam01380 SIS SIS domain. SIS 36.1 32 0.00083 15.2 4.0 98 199-306 2-105 (131)
89 KOG2666 consensus 35.6 31 0.0008 15.2 2.4 46 195-256 164-209 (481)
90 COG1701 Uncharacterized protei 34.8 34 0.00087 15.0 4.0 26 18-43 50-86 (256)
91 TIGR00438 rrmJ ribosomal RNA l 34.2 12 0.00031 17.8 0.2 33 59-94 73-108 (192)
92 cd05008 SIS_GlmS_GlmD_1 SIS (S 33.4 36 0.00091 14.9 4.0 52 256-307 43-99 (126)
93 cd02171 G3P_Cytidylyltransfera 33.3 36 0.00092 14.9 8.6 86 6-101 1-98 (129)
94 COG2217 ZntA Cation transport 32.4 37 0.00095 14.8 7.0 86 216-316 562-652 (713)
95 TIGR03127 RuMP_HxlB 6-phospho 30.4 40 0.001 14.6 7.2 91 199-304 27-122 (179)
96 TIGR01011 rpsB_bact ribosomal 30.4 39 0.001 14.6 2.2 30 89-118 63-94 (227)
97 PRK10490 sensor protein KdpD; 30.1 41 0.001 14.5 8.4 87 8-95 282-373 (895)
98 TIGR01949 AroFGH_arch predicte 29.8 41 0.001 14.5 3.6 41 197-237 189-229 (259)
99 cd05710 SIS_1 A subgroup of th 29.6 41 0.0011 14.5 2.6 46 261-306 49-99 (120)
100 COG2204 AtoC Response regulato 28.6 43 0.0011 14.4 2.4 126 9-137 51-224 (464)
101 cd04250 AAK_NAGK-C AAK_NAGK-C: 27.9 37 0.00093 14.8 1.7 12 221-232 182-193 (279)
102 PRK09288 purT phosphoribosylgl 27.8 38 0.00096 14.7 1.8 30 5-40 11-41 (395)
103 TIGR03581 EF_0839 conserved hy 27.2 46 0.0012 14.2 2.7 31 90-120 59-89 (236)
104 PRK13278 purP 5-formaminoimida 27.1 46 0.0012 14.2 7.3 96 4-118 17-112 (356)
105 cd05005 SIS_PHI Hexulose-6-pho 26.6 47 0.0012 14.2 4.7 90 199-305 30-126 (179)
106 CHL00202 argB acetylglutamate 26.4 36 0.00092 14.9 1.5 18 25-42 13-30 (284)
107 cd01987 USP_OKCHK USP domain i 26.1 48 0.0012 14.1 7.4 79 8-100 2-97 (124)
108 PRK08195 4-hydroxy-2-ketovaler 26.0 48 0.0012 14.1 7.9 98 21-120 115-221 (337)
109 PRK12767 carbamoyl phosphate s 25.4 49 0.0013 14.0 3.8 74 6-97 2-77 (325)
110 PRK12570 N-acetylmuramic acid- 25.3 49 0.0013 14.0 3.0 10 292-301 165-174 (296)
111 pfam02006 DUF137 Protein of un 25.1 50 0.0013 14.0 4.3 53 14-67 11-66 (178)
112 PRK13711 conjugal transfer pro 25.0 34 0.00087 15.0 1.1 10 152-161 49-58 (113)
113 KOG4180 consensus 24.2 52 0.0013 13.9 2.2 33 183-215 241-273 (395)
114 TIGR02017 hutG_amidohyd N-form 24.0 28 0.00071 15.6 0.5 30 92-122 119-149 (269)
115 PRK08226 short chain dehydroge 23.8 28 0.0007 15.6 0.5 47 206-253 216-263 (263)
116 COG2139 RPL21A Ribosomal prote 22.9 46 0.0012 14.2 1.5 28 243-288 49-76 (98)
117 pfam03596 Cad Cadmium resistan 21.4 23 0.00059 16.1 -0.3 26 251-276 160-190 (192)
118 PRK11337 DNA-binding transcrip 20.8 60 0.0015 13.4 3.9 96 199-308 138-242 (293)
119 TIGR03010 sulf_tusC_dsrF sulfu 20.7 61 0.0015 13.4 6.1 56 17-72 13-84 (116)
120 TIGR01915 npdG NADPH-dependent 20.2 62 0.0016 13.4 2.4 160 38-251 32-209 (233)
121 PRK11178 uridine phosphorylase 20.2 62 0.0016 13.4 6.3 13 274-287 205-217 (251)
No 1
>COG2025 FixB Electron transfer flavoprotein, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=0 Score=679.39 Aligned_cols=305 Identities=44% Similarity=0.647 Sum_probs=273.6
Q ss_pred EEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 34899998029758789999999998738934799981892688899870789739999448101000123224557874
Q gi|254780369|r 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSI 85 (318)
Q Consensus 6 M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~ 85 (318)
|++|||+||.++.+++.|+|+++.|++++ ++.++++|. ..+.++.. +|+|+|+.++++.+++|.++.|++++.++
T Consensus 1 ~~vlv~~e~~~~~l~~~s~el~~~A~~l~-~v~~vv~g~---~~~~~~~~-~Gad~v~~~e~~~~~~~~~e~~~~~l~~l 75 (313)
T COG2025 1 MKVLVVAEHDGGRLSPVSLELLTAARKLG-DVAAVVIGE---GAAAAAKA-YGADKVLVAEGPELANYLPEPYADALVDL 75 (313)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHHHHHCC-CEEEEEECH---HHHHHHHH-CCCCEEEEECCCCHHCCCHHHHHHHHHHH
T ss_conf 93899965788752520199999987309-648999652---88888875-49878999616632005325899999999
Q ss_pred CCC--CCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEECCCC--EEEEEEECCCEEEEEEECCC-CEEEEECCCCCCCC
Q ss_conf 034--56044157810344678888751774101320224687--27974106952689997798-42799516864333
Q gi|254780369|r 86 ARD--YKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPK--IFKRPSYTGNIIQTIETTDT-YQIITIRAIAFPPA 160 (318)
Q Consensus 86 ~~~--~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~~~~--~~~rp~fgG~~~a~v~~~~~-~~viTvr~~sf~~~ 160 (318)
+++ |+++|+|+|.+||+|+||+|+||+.++++||++++.+. +++||+|+|+++++++++++ |+|+|+||++|++.
T Consensus 76 ~~~~~p~~il~~aT~~Gk~la~rvAa~l~~~~~~D~~~l~~~~~l~~~Rp~ygG~~i~~~~~~~~~~~v~Tvr~g~~~~~ 155 (313)
T COG2025 76 AKKYKPDVVLLPATTNGKELAPRVAARLDVGLIADVTSLDVGDGLTFTRPIYGGNAIATVISPSGRPAVITVRPGVFAAA 155 (313)
T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCEEEEEEECCCCCCEEEEECCCCCCCC
T ss_conf 98469987997577636778999999808871578999974896179852034300489864799836999766566777
Q ss_pred CCCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHH
Q ss_conf 35566666156211102445302588544431456667000745641367777833568899999876398597425788
Q gi|254780369|r 161 PKAEKVASIHKISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAV 240 (318)
Q Consensus 161 ~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~v 240 (318)
+... .++++...++........ +........+++++|++|++|||||||+|++||| +++++||++|||+||||||+|
T Consensus 156 ~~~~-~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~L~~A~iVVsgGRG~gs~enf-~~i~~LA~~LGa~VGaSRp~v 232 (313)
T COG2025 156 AAAL-GGSVETEKVVAPANAIAV-VSTGFSLKKSGRVDLAEAKIVVSGGRGLGSKENF-KLLEELADVLGAAVGASRPAV 232 (313)
T ss_pred CCCC-CCCEEEEEECCCCHHHCC-EECEEEECCCCCCCCCCCEEEEECCCCCCCHHHH-HHHHHHHHHHCCEEECCHHHH
T ss_conf 7778-885069971376201000-0001431457888623161999867436894671-889999998496102257888
Q ss_pred HCCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 678888889540159754573899996167264555516898899976659988310276457523899999988609
Q gi|254780369|r 241 DAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 241 D~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|+||+|++||||||||+|+|+||||||||||+|||+||++||+|||||||||||||++||||||||+++|+|+|+|+|
T Consensus 233 d~gw~p~d~QVGqTGk~V~P~LYIA~GISGAiQHlaGm~~Sk~IVAINkD~nAPIF~~ADyGiVgDl~~ivP~Lie~l 310 (313)
T COG2025 233 DAGWMPNDRQVGQTGKTVAPKLYIALGISGAIQHLAGMKDSKVIVAINKDPNAPIFQVADYGIVGDLFKIVPALIEAL 310 (313)
T ss_pred HCCCCCCCCEECCCCCEECCCEEEEEECCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 648998551665878685653899980365798874112486899981899997521277245420999999999997
No 2
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=100.00 E-value=0 Score=668.07 Aligned_cols=301 Identities=24% Similarity=0.379 Sum_probs=263.3
Q ss_pred CEEEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 50023489999802975878999999999873893479998189268889987078973999944810100012322455
Q gi|254780369|r 2 TYCDMPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDF 81 (318)
Q Consensus 2 ~~~~M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~ 81 (318)
.|.| ||||+|+.++ +.|||++||+||.++.++++|++ .++++.. ||+|+||.++++.+. +.++.|+++
T Consensus 3 ~~~~--vwVf~e~~~~-----~~ELlg~Ar~Lg~~v~avv~G~~---~a~~l~~-~Gad~V~~~~~~~~~-~~~~~y~~~ 70 (312)
T PRK11916 3 QLNS--VWVFSDNPER-----YAELFGGAQQWGQQVYAIVQNTD---QAQAVMP-YGPKCIYVLEQNDAL-QRTENYAES 70 (312)
T ss_pred CCCC--EEEEEECCCC-----HHHHHHHHHHHCCEEEEEEECCC---HHHHHHH-CCCCEEEEEECCHHH-CCCHHHHHH
T ss_conf 5477--8999967888-----89999999873882799996680---6999986-199889995164121-030689999
Q ss_pred HHHHCC--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEEC---CCCEEEEEEECCCEEEEEEECCCCEEEEECCCC
Q ss_conf 787403--456044157810344678888751774101320224---687279741069526899977984279951686
Q gi|254780369|r 82 VVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII---SPKIFKRPSYTGNIIQTIETTDTYQIITIRAIA 156 (318)
Q Consensus 82 l~~~~~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~---~~~~~~rp~fgG~~~a~v~~~~~~~viTvr~~s 156 (318)
++++++ +|++||+|+|.+||||+||||+||++++++||++++ +...++||+|||+++++++++.+++|+|+||++
T Consensus 71 l~~li~~~~P~~vL~~aT~~GRdlA~rlAarL~~gl~aD~~~l~~~~~~l~~~r~~~gG~~~~~~~~~~~~~~~tvrpg~ 150 (312)
T PRK11916 71 IAALLKDKHPAMLLLAATKRGKALAARLSVQLNAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGV 150 (312)
T ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCEEEEECCCC
T ss_conf 99999864999999867811667899999984998254249987169957998411477158998708995799989866
Q ss_pred CCCCC-CCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE
Q ss_conf 43333-55666661562111024453025885444314566670007456413677778335688999998763985974
Q gi|254780369|r 157 FPPAP-KAEKVASIHKISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGA 235 (318)
Q Consensus 157 f~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~ 235 (318)
|++.+ .......++.+....+. ......+.....++++||++|++|||+|||++++||| +++++||++|||++||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~vdL~~A~vVVsgGRGlg~~e~f-~l~~eLA~~LGa~vGa 226 (312)
T PRK11916 151 QEPCTSDTSHQCPTETVPYVAPR---HEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDL-KMVHELAAVLNAEVGC 226 (312)
T ss_pred CCCCCCCCCCCCCEEECCCCCCC---CEEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHH-HHHHHHHHHHCCCEEE
T ss_conf 66676788886405872455787---4189999960457899876685899888766770308-9999999985993461
Q ss_pred EHHHHH-CCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHH
Q ss_conf 257886-7888888954015975457389999616726455551689889997665998831027645752389999998
Q gi|254780369|r 236 TRDAVD-AGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEI 314 (318)
Q Consensus 236 SRp~vD-~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l 314 (318)
|||+|| .||+||+||||||||+|+|+||||||||||+||++||++|++|||||||||||||++||||||||++||||+|
T Consensus 227 SRpvvd~~GW~p~~~QVGqTGk~V~P~lYiA~GISGAiQH~~Gm~~s~~IVAIN~D~~APIF~~ADygiVgD~~evvP~L 306 (312)
T PRK11916 227 SRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVIVAINKDKNAPIFNYADYGLVGDIYKVVPAL 306 (312)
T ss_pred ECCEEECCCCCCHHHEECCCCEEECCEEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHHH
T ss_conf 01212247779855742358839786289998146278888654469889998189899850107877867299999999
Q ss_pred HHCC
Q ss_conf 8609
Q gi|254780369|r 315 EKNL 318 (318)
Q Consensus 315 ~~~l 318 (318)
+|+|
T Consensus 307 ie~l 310 (312)
T PRK11916 307 ISQL 310 (312)
T ss_pred HHHH
T ss_conf 9986
No 3
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=100.00 E-value=0 Score=656.06 Aligned_cols=301 Identities=26% Similarity=0.425 Sum_probs=262.5
Q ss_pred CEEEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH
Q ss_conf 50023489999802975878999999999873893479998189268889987078973999944810100012322455
Q gi|254780369|r 2 TYCDMPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDF 81 (318)
Q Consensus 2 ~~~~M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~ 81 (318)
+|++ ||||+|+.+. ..||+++||+||+++.++++|+.. +.++.. ||+|+||.++++. .++..+.|+.+
T Consensus 3 ~~~~--VwVf~e~~~~-----~~ELl~~Ar~L~~~v~a~v~~~~~---~~~~~~-~GAd~V~~v~~~~-~~~~~~~ya~~ 70 (313)
T PRK03363 3 TFSQ--VWVFSDTPSR-----LPELMNGAQALANQINAFVLNDAD---GAQAIQ-LGANHVWKLSGKP-DDRMIEDYAGV 70 (313)
T ss_pred CCCC--EEEEEECCCC-----HHHHHHHHHHHCCEEEEEEECCCC---HHHHHH-HCCCEEEEECCCC-CCCCCHHHHHH
T ss_conf 5571--8999856686-----899999999866825799965602---889997-0898999945762-23334689999
Q ss_pred HHHHCCC--C-CEEECCCCCHHHHHHHHHHHHCCCCEECCCEEEC---CCCEEEEEEECCCEEEEEEECCCCEEEEECCC
Q ss_conf 7874034--5-6044157810344678888751774101320224---68727974106952689997798427995168
Q gi|254780369|r 82 VVSIARD--Y-KTIMASANAMGKDILPRVAAMLDVMQVSEVIEII---SPKIFKRPSYTGNIIQTIETTDTYQIITIRAI 155 (318)
Q Consensus 82 l~~~~~~--~-~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~---~~~~~~rp~fgG~~~a~v~~~~~~~viTvr~~ 155 (318)
+.+++.+ + ++||+|+|.+||||+||||+||++++++||++++ +...++|++|||+++++.++..+++|+|+||+
T Consensus 71 ~~~~i~~~~~~~ivL~~aT~~GrdlAprlAarl~~gl~aD~t~l~~~~~~~~~~~~~~gG~~~~~~~~~~~~~~~Tvrpg 150 (313)
T PRK03363 71 MADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSG 150 (313)
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHEEEEEECCCCEEEEECCC
T ss_conf 99999975999599984882178899999997398715464799865996269933355131799998899849998999
Q ss_pred CCCCCC-CCCCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Q ss_conf 643333-5566666156211102445302588544431456667000745641367777833568899999876398597
Q gi|254780369|r 156 AFPPAP-KAEKVASIHKISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIG 234 (318)
Q Consensus 156 sf~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG 234 (318)
+|++.+ ...+.+++..+....+.. ..+.+......++++||++|++|||+|||++++||| +|+++||++|||++|
T Consensus 151 ~f~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~vdL~~A~vVVsgGRG~~~~e~~-~l~~eLA~~LGa~vG 226 (313)
T PRK03363 151 TFDAAQPDASRTGETHTVEWQAPAV---AITRTATQARQSNSVDLDKARLVVSVGRGIGSKENI-ALAEQLCKAIGAELA 226 (313)
T ss_pred CCCCCCCCCCCCCEEEEEECCCCCC---EEEEEEEEECCCCCCCCCCCCEEEECCCCCCCCHHH-HHHHHHHHHHCCCEE
T ss_conf 8787768889862389640237873---269999996136778866599999948765782347-999999998486003
Q ss_pred EEHHHHH-CCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHH
Q ss_conf 4257886-788888895401597545738999961672645555168988999766599883102764575238999999
Q gi|254780369|r 235 ATRDAVD-AGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPE 313 (318)
Q Consensus 235 ~SRp~vD-~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~ 313 (318)
||||+|| +||+||+||||||||+|+|+||||||||||+||++||++|++|||||||||||||++||||||||++||||+
T Consensus 227 ~SRp~~~d~GW~p~~~QVGqTGktV~P~LYIA~GISGAiQH~aGm~~S~~IVAINkDp~APIF~~ADyGIVGDl~evvP~ 306 (313)
T PRK03363 227 CSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPA 306 (313)
T ss_pred ECCCCCCCCCCCCHHHEECCCCCEECCCEEEEECCCHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCEEEECCHHHHHHH
T ss_conf 02311134898986653116894856628999765507888866456888999828989975010787786649999999
Q ss_pred HHHCC
Q ss_conf 88609
Q gi|254780369|r 314 IEKNL 318 (318)
Q Consensus 314 l~~~l 318 (318)
|+|+|
T Consensus 307 L~e~l 311 (313)
T PRK03363 307 LTAAL 311 (313)
T ss_pred HHHHH
T ss_conf 99986
No 4
>KOG3954 consensus
Probab=100.00 E-value=0 Score=612.76 Aligned_cols=309 Identities=48% Similarity=0.755 Sum_probs=292.3
Q ss_pred EEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCC-CCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 4899998029758789999999998738934799981892688899870789-739999448101000123224557874
Q gi|254780369|r 7 PVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQG-VTQVIVAQSTIFRHKLAGPVSDFVVSI 85 (318)
Q Consensus 7 ~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~G-ad~V~~~~~~~~~~~~~~~~a~~l~~~ 85 (318)
++|+++||++|.|++.||..+++|++||+++.+++.|.+++..++++.+++| +.+|++++++.|+++.||.++..+...
T Consensus 22 StLv~aEh~~g~l~p~tls~i~AA~klg~~vs~lv~Gs~~~k~ae~~ak~~~~v~kvlvae~~k~~~~lpe~lapl~~~~ 101 (336)
T KOG3954 22 STLVLAEHQNGSLSPITLSTITAAKKLGGDVSVLVAGSKASKAAEALAKVVGDVKKVLVAEDDKLEGNLPEQLAPLLLAN 101 (336)
T ss_pred HEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHEEEEEECCHHCCCCHHHHHHHHHHH
T ss_conf 41787741698436101688999987189659999557406999999864354124899625111156667768899998
Q ss_pred CC--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEECCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCC
Q ss_conf 03--4560441578103446788887517741013202246872797410695268999779842799516864333355
Q gi|254780369|r 86 AR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKA 163 (318)
Q Consensus 86 ~~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~~~~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~~~~ 163 (318)
.+ +|++|+.+++.+||.+.||+|++||...++|++.+.+.++|.||+|.|+++.|++++.+++++|+|..+|+|++..
T Consensus 102 ~kq~~yshi~a~~SafGK~vlPRvaA~lDV~pIsdvi~i~s~dtFvRpiYAGNa~~tv~~~~~~k~ltvR~tsF~~a~~s 181 (336)
T KOG3954 102 QKQFDYSHILAGSSAFGKNVLPRVAAKLDVSPISDVIGIKSADTFVRPIYAGNAICTVKCKAPIKLLTVRATSFPPAATS 181 (336)
T ss_pred HHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHHEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCCCC
T ss_conf 74487268983154125540255776606643101267516753454440364478997178716999964547876667
Q ss_pred CCCCCEEEEECCCCCCCCEEEEEEEEEECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCC
Q ss_conf 66666156211102445302588544431456667000745641367777833568899999876398597425788678
Q gi|254780369|r 164 EKVASIHKISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAG 243 (318)
Q Consensus 164 ~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~g 243 (318)
++++..+..... +......+++.++..++++|||+.|++||+||||+++.||| +|+++|||+|||++|+||++||+|
T Consensus 182 g~s~a~~~~~s~--~~~~~~se~v~~~ltkseRPdL~sAkvVVsGGR~LKs~enF-kll~~LAdklgaavGAtRaaVDaG 258 (336)
T KOG3954 182 GGSAATEVAPSD--DKPVSLSEWVSQELTKSERPDLTSAKVVVSGGRGLKSGENF-KLLYDLADKLGAAVGATRAAVDAG 258 (336)
T ss_pred CCCCCEEECCCC--CCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCC-EEHHHHHHHHCHHHCHHHHHHCCC
T ss_conf 887413534679--97267899987651324587665443898778536775430-005777877552214046540367
Q ss_pred CCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 888889540159754573899996167264555516898899976659988310276457523899999988609
Q gi|254780369|r 244 FAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 244 w~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|.|.+.|||||||.|+|+||||+||||||||++||||||+||||||||+|||||.||||+|||+|+++|+|+|+|
T Consensus 259 yvpNdlQiGQTGKIVAPeLYiAvGisGAIQHLAGmKDSKvIvAINkDpdAPIFqvAD~GlvgDLfkiVPELtekL 333 (336)
T KOG3954 259 YVPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADYGLVGDLFKIVPELTEKL 333 (336)
T ss_pred CCCCCCCCCCCCCEECCCEEEEEECCHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 688742015566150420278870127888863476561799963799997156303210045888709998761
No 5
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=100.00 E-value=2.3e-38 Score=264.24 Aligned_cols=165 Identities=35% Similarity=0.536 Sum_probs=154.3
Q ss_pred EEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHC
Q ss_conf 48999980297587899999999987389347999818926888998707897399994481010001232245578740
Q gi|254780369|r 7 PVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIA 86 (318)
Q Consensus 7 ~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~ 86 (318)
+||||+||++|++++.|+|++++|++|++++.++++|.+.++.+.++.. ||+++||.++++.+.+|+++.|++++.+++
T Consensus 1 sILV~~E~~~g~l~~~s~Ell~~A~~L~~~v~avv~G~~~~~~~~~l~~-~Ga~~V~~~~~~~l~~~~~~~~~~~l~~~~ 79 (168)
T cd01715 1 SVLVLAEHRNGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAAALKA-YGADKVLVAEDPALAHYLAEPYAPALVALA 79 (168)
T ss_pred CEEEEEECCCCEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 9999998069999889999999999859976999957854467999865-698899995681020457789999999987
Q ss_pred C--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEECCCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCC
Q ss_conf 3--45604415781034467888875177410132022468727974106952689997798427995168643333556
Q gi|254780369|r 87 R--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAE 164 (318)
Q Consensus 87 ~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~~~~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~~~~~ 164 (318)
+ +|++||+++|++|||++||||+||++++++||++++++.+++||+|+||++++++++++++|+|+|||+|++.+..+
T Consensus 80 ~~~~p~~Vl~~~t~~grdlaprlAa~l~a~~vsdv~~l~~~~~~~r~v~~Gk~~~~~~~~~~~~i~tvr~~sF~~~e~~~ 159 (168)
T cd01715 80 KKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTALEDDLTFTRPIYAGNALATVKSPDRPKVATVRPGAFPAAAAGG 159 (168)
T ss_pred HCCCCCEEEECCCHHHHHHHHHHHHHHCCCEECCEEEECCCCEEEEECCCCEEEEEEEECCCCEEEEECCCCCCCCCCCC
T ss_conf 52399789964887587899999998698724425995489999975368807999994899889999998755787889
Q ss_pred CCCCEEEE
Q ss_conf 66661562
Q gi|254780369|r 165 KVASIHKI 172 (318)
Q Consensus 165 ~~~~v~~~ 172 (318)
+++.++.+
T Consensus 160 ~~~~ve~~ 167 (168)
T cd01715 160 GSAVVEAV 167 (168)
T ss_pred CCCEEEEC
T ss_conf 98547837
No 6
>pfam00766 ETF_alpha Electron transfer flavoprotein FAD-binding domain. This domain found at the C-terminus of electron transfer flavoprotein alpha chain and binds to FAD. The fold consists of a five-stranded parallel beta sheet as the core of the domain, flanked by alternating helices. A small part of this domain is donated by the beta chain.
Probab=100.00 E-value=2.8e-38 Score=263.75 Aligned_cols=86 Identities=65% Similarity=0.972 Sum_probs=83.7
Q ss_pred CCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHH
Q ss_conf 66700074564136777783356889999987639859742578867888888954015975457389999616726455
Q gi|254780369|r 196 PTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHI 275 (318)
Q Consensus 196 ~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~ 275 (318)
.+||++|++||++|||++++||| +++++||+.|||++|||||+||+||+|+++||||||++|+|+||||||||||+||+
T Consensus 1 ~vdL~~A~~vV~~GrG~~~~e~~-~~~~~LA~~lga~vg~SRp~vd~gw~p~~~qIG~SG~~v~P~lyia~GISGa~QH~ 79 (86)
T pfam00766 1 RVDLSEAKVVVSGGRGLGSKENF-KLLEELADVLGAEVGASRPAVDAGWIDADRQVGQTGKTVRPKLYIAVGISGAIQHL 79 (86)
T ss_pred CCCCCCCCEEEECCCCCCCHHHH-HHHHHHHHHHCCCEEECHHHHHCCCCCHHHEECCCCCEECCCEEEEEECCCHHHHH
T ss_conf 99876599999858876998888-99999999869921413688867899767577688808488689998211179998
Q ss_pred HHHCCCC
Q ss_conf 5516898
Q gi|254780369|r 276 SGMKDSK 282 (318)
Q Consensus 276 ~G~~~s~ 282 (318)
+||++|+
T Consensus 80 ~Gi~~sd 86 (86)
T pfam00766 80 AGMKDSD 86 (86)
T ss_pred HHHHCCC
T ss_conf 5323469
No 7
>pfam01012 ETF Electron transfer flavoprotein domain. This family includes the homologous domain shared between the alpha and beta subunits of the electron transfer flavoprotein.
Probab=99.97 E-value=7.6e-30 Score=210.04 Aligned_cols=152 Identities=24% Similarity=0.397 Sum_probs=137.3
Q ss_pred EEEEEEEECCCEECHHHHHHHHHHHHH----CCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 489999802975878999999999873----8934799981892688899870789739999448101000123224557
Q gi|254780369|r 7 PVLLLADYNQENLSEQTARIVTAAQKI----SHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFV 82 (318)
Q Consensus 7 ~ilV~~E~~~g~l~~~slEll~~A~~l----g~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l 82 (318)
+||||+|+++|+|++.++|+|++|++| +.++.++++|.+.+.....+.. ||+|+||.++++.+.+|.++.|+++|
T Consensus 1 ~ilv~~e~~~g~l~~~~~eal~~A~~l~~~~g~~v~~v~~G~~~~~~~~~~~~-~Gad~v~~~~~~~~~~~~~~~~a~~l 79 (161)
T pfam01012 1 SVLVVAEHGNGKLNPVDLEALEAARQLAEALGGEVTAVVVGPVPAAAEALLAA-MGADKVLVVEDPALAGYDAEAYAAAL 79 (161)
T ss_pred CEEEEEECCCCEECHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHH-CCCCEEEEECCHHHCCCCHHHHHHHH
T ss_conf 99999987799848889999999999998639859999953947999999875-59999999787121246868899999
Q ss_pred HHHCC--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEECCC---CEEEEEEECCCEEEEEEECCCCEEEEECCCCC
Q ss_conf 87403--45604415781034467888875177410132022468---72797410695268999779842799516864
Q gi|254780369|r 83 VSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISP---KIFKRPSYTGNIIQTIETTDTYQIITIRAIAF 157 (318)
Q Consensus 83 ~~~~~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~~~---~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf 157 (318)
.++++ +|++||+++|..|||++||||++|+.++++||++++.+ .+++||+|+|+.+.+++++++|+|+|+||++|
T Consensus 80 ~~~i~~~~~~~Vl~~~s~~g~~~~~rlA~~L~~~~vsdv~~l~~~~~~~~~~R~~~~G~~~~~~~~~~~~~vitv~~~~f 159 (161)
T pfam01012 80 AALIKKEGPDLVLAGATSIGKDLAPRLAALLGAPLITDVTALEVEGGKLTVTRPIYGGNAIATVKLPDPPAVLTVRPGAF 159 (161)
T ss_pred HHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCC
T ss_conf 99754139979997040787614699999959986142799997398399999845886999999899988999837973
Q ss_pred CC
Q ss_conf 33
Q gi|254780369|r 158 PP 159 (318)
Q Consensus 158 ~~ 159 (318)
+|
T Consensus 160 ~p 161 (161)
T pfam01012 160 EP 161 (161)
T ss_pred CC
T ss_conf 94
No 8
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=99.95 E-value=4.9e-27 Score=192.15 Aligned_cols=157 Identities=27% Similarity=0.431 Sum_probs=142.2
Q ss_pred EEEEEEEECCCE----ECHHHHHHHHHHHHHC---CCEEEEEECCCHHHHH-HHHHCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 489999802975----8789999999998738---9347999818926888-9987078973999944810100012322
Q gi|254780369|r 7 PVLLLADYNQEN----LSEQTARIVTAAQKIS---HDIHVLVLGDNIENIA-QQAARIQGVTQVIVAQSTIFRHKLAGPV 78 (318)
Q Consensus 7 ~ilV~~E~~~g~----l~~~slEll~~A~~lg---~~v~avv~G~~~~~~a-~~~~~~~Gad~V~~~~~~~~~~~~~~~~ 78 (318)
+|||++||.++. +++.+++++..|.+|+ ++++++++|.+....+ .+++. +|+|+++.++++.+.+|+++.+
T Consensus 1 ~IlV~vk~~~d~~~~v~n~~d~~Ale~A~~lke~~~~v~~v~~G~~~~~~~l~~~~a-~GaD~v~~v~~~~~~~~~~~~~ 79 (181)
T cd01985 1 KILVLVEHVPDTAELVLNPLDLEAVEAALRLKEYGGEVTALVIGPPAAEVALREALA-MGADKVLLVEDPALAGYDPEAT 79 (181)
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHH
T ss_conf 989999877998874458036999999998644499689999788168999999977-2897899981674457688999
Q ss_pred HHHHHHHCC--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEECC---CCEEEEEEECCCEEEEEEECCCCEEEEEC
Q ss_conf 455787403--4560441578103446788887517741013202246---87279741069526899977984279951
Q gi|254780369|r 79 SDFVVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIIS---PKIFKRPSYTGNIIQTIETTDTYQIITIR 153 (318)
Q Consensus 79 a~~l~~~~~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~~---~~~~~rp~fgG~~~a~v~~~~~~~viTvr 153 (318)
+++|+++++ +|++||++++..||+++||||++|+.++++||++++. ..+++||.|+|+.+++++++..|+++|+|
T Consensus 80 a~~la~~i~~~~~dlVl~g~~s~g~~~~~~lA~~L~~~~v~~v~~i~~~~~~~~~~R~~~~g~~~~~v~~~~~P~vitv~ 159 (181)
T cd01985 80 AKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTKLEIDGGDLTVTRPIYAGNGLETVESPDLPAVITVR 159 (181)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHCCHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEEEECCCEEEEEEECCCCEEEEEE
T ss_conf 99999999860998999604102225899999985997312379999809969999994069769999979998899985
Q ss_pred CCCCCCCCCCC
Q ss_conf 68643333556
Q gi|254780369|r 154 AIAFPPAPKAE 164 (318)
Q Consensus 154 ~~sf~~~~~~~ 164 (318)
+++|+|.....
T Consensus 160 ~~~~~pr~~~~ 170 (181)
T cd01985 160 PGAFEPRYPSG 170 (181)
T ss_pred CCCCCCCCCCC
T ss_conf 89876577887
No 9
>PRK12342 putative electron transfer flavoprotein YdiQ; Provisional
Probab=99.05 E-value=1.7e-07 Score=67.82 Aligned_cols=126 Identities=11% Similarity=0.210 Sum_probs=96.5
Q ss_pred HHHCCCEEEEEECCCHH---HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEECCC---CCHHHH
Q ss_conf 87389347999818926---8889987078973999944810100012322455787403--456044157---810344
Q gi|254780369|r 31 QKISHDIHVLVLGDNIE---NIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--DYKTIMASA---NAMGKD 102 (318)
Q Consensus 31 ~~lg~~v~avv~G~~~~---~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~~~~Vl~~~---t~~Grd 102 (318)
+..|++++++++|.... .+-.+++. .|+|+.+.+.++.|....+-..+.+|++.++ +|++||++. .....-
T Consensus 48 k~~gg~v~vvs~G~~~~~~~~~~r~alA-mGaD~a~li~d~~~~g~D~~~tA~~La~~i~~~~~DLVl~G~~s~D~~tgq 126 (254)
T PRK12342 48 ATDGDEIAALTVGGSLLQNSKVRKDVLS-RGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGSGDLYAQQ 126 (254)
T ss_pred HHCCCCEEEEEECCCCHHHHHHHHHHHH-HCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 8619969999956880255999999997-379889998457656668899999999999983969999936212489885
Q ss_pred HHHHHHHHCCCCEECCCEEEC--CC-CEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 678888751774101320224--68-72797410695268999779842799516864333
Q gi|254780369|r 103 ILPRVAAMLDVMQVSEVIEII--SP-KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPA 160 (318)
Q Consensus 103 laprlAarL~~~~vsdvv~i~--~~-~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~ 160 (318)
+.|+||..|+.++++.+.+++ ++ ..++|..=+| ..+++. ..|+++|+..+..+|-
T Consensus 127 vg~~lAe~Lg~P~vt~v~~i~~~~~~~~v~R~~e~g--~e~ve~-~lPavvtv~~~~n~PR 184 (254)
T PRK12342 127 VGLLLGELLQLPVINAVSKIQRQGNKLVVERTLEDD--VEVIEL-SLPAVLCVTSDINVPR 184 (254)
T ss_pred HHHHHHHHCCCCCEEEEEEEEEECCEEEEEEECCCC--EEEEEE-CCCEEEEEECCCCCCC
T ss_conf 789999870997166799999719989999991796--799997-7998999989988557
No 10
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=98.86 E-value=1.6e-07 Score=68.07 Aligned_cols=131 Identities=17% Similarity=0.223 Sum_probs=101.0
Q ss_pred HHHHHHHHCCCEEEEEECCC-HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEECCC---CCH
Q ss_conf 99999873893479998189-268889987078973999944810100012322455787403--456044157---810
Q gi|254780369|r 26 IVTAAQKISHDIHVLVLGDN-IENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--DYKTIMASA---NAM 99 (318)
Q Consensus 26 ll~~A~~lg~~v~avv~G~~-~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~~~~Vl~~~---t~~ 99 (318)
++....+.+++++++.+|.. .++.-.+++.. |+|+.+.+.++.+....+...+.+|++.++ +|++||++. ...
T Consensus 44 Alrlke~~g~~VtvlsvGp~~a~~~Lr~alAm-GaD~ai~i~d~~~~~~D~~~tA~~La~~i~~~~~DLIl~G~~s~D~~ 122 (202)
T cd01714 44 ALRLKEKYGGEVTVVSMGPPQAEEALREALAM-GADRAILVSDRAFAGADTLATAKALAAAIKKIGVDLILTGKQSIDGD 122 (202)
T ss_pred HHHHHHCCCCEEEEEEECCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 99986603988999993747889999999970-89835998065556669899999999999875998899954545799
Q ss_pred HHHHHHHHHHHCCCCEECCCEEEC--CC-CEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCC
Q ss_conf 344678888751774101320224--68-72797410695268999779842799516864333
Q gi|254780369|r 100 GKDILPRVAAMLDVMQVSEVIEII--SP-KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPA 160 (318)
Q Consensus 100 GrdlaprlAarL~~~~vsdvv~i~--~~-~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~ 160 (318)
...+.++||.+|+.++++.+++++ ++ .+++|..=+| ..+++. ..|+++|+.++..+|.
T Consensus 123 ~g~v~~~lA~~Lg~P~vt~v~~i~~~~~~~~v~r~~~~g--~e~~~~-~lPavisv~~~~n~pR 183 (202)
T cd01714 123 TGQVGPLLAELLGWPQITYVSKIEIEGGKVTVERELEGG--VETVEV-KLPAVITVDLGINEPR 183 (202)
T ss_pred CCCHHHHHHHHHCCCCCCEEEEEEEECCEEEEEEECCCE--EEEEEE-CCCEEEEEECCCCCCC
T ss_conf 777999999994897224888999939999999984896--999996-3999999989988657
No 11
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=98.69 E-value=1.4e-06 Score=62.10 Aligned_cols=138 Identities=16% Similarity=0.208 Sum_probs=104.4
Q ss_pred EECHHHHHHHHHHHHH-----CCCEEEEEEC-CCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--CC
Q ss_conf 5878999999999873-----8934799981-89268889987078973999944810100012322455787403--45
Q gi|254780369|r 18 NLSEQTARIVTAAQKI-----SHDIHVLVLG-DNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--DY 89 (318)
Q Consensus 18 ~l~~~slEll~~A~~l-----g~~v~avv~G-~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~~ 89 (318)
.+++..+-++-.|-+| +.+++++.+| ...++....++.. |+|+.+.+.+..|....+...+.+|++.++ ++
T Consensus 34 ~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~lr~aLAm-GaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~ 112 (260)
T COG2086 34 SINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQAEEALREALAM-GADRAILITDRAFAGADPLATAKALAAAVKKIGP 112 (260)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 258120799999998614688866999994645339999999854-8875999703223675589999999999987499
Q ss_pred CEEECCC---CCHHHHHHHHHHHHCCCCEECCCEEEC--CCC--EEEEEEECCCEEEEEEECCCCEEEEECCCCCCC
Q ss_conf 6044157---810344678888751774101320224--687--279741069526899977984279951686433
Q gi|254780369|r 90 KTIMASA---NAMGKDILPRVAAMLDVMQVSEVIEII--SPK--IFKRPSYTGNIIQTIETTDTYQIITIRAIAFPP 159 (318)
Q Consensus 90 ~~Vl~~~---t~~GrdlaprlAarL~~~~vsdvv~i~--~~~--~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~ 159 (318)
++||++. ....--+.++||..|+.|+++.+.+++ ++. +++|-.=+ -..++.. .-|+++|+.....+|
T Consensus 113 ~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~i~~~d~~~v~v~R~le~--g~e~~e~-~LPaVvtv~~~~n~P 186 (260)
T COG2086 113 DLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSKIEIVDGGKVTVERELEG--GLETVEA-PLPAVVTVDLRINEP 186 (260)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEEEEEECCCCEEEEEEECCC--CEEEEEC-CCCEEEEECCCCCCC
T ss_conf 8899813443576466589999986985053378899747987999997379--5399971-598899953555787
No 12
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=98.64 E-value=1.6e-06 Score=61.66 Aligned_cols=137 Identities=15% Similarity=0.239 Sum_probs=100.1
Q ss_pred ECHHHHHHHHHHHHH----CC-CEEEEEECCCH-H--HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--C
Q ss_conf 878999999999873----89-34799981892-6--8889987078973999944810100012322455787403--4
Q gi|254780369|r 19 LSEQTARIVTAAQKI----SH-DIHVLVLGDNI-E--NIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--D 88 (318)
Q Consensus 19 l~~~slEll~~A~~l----g~-~v~avv~G~~~-~--~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~ 88 (318)
+++...-+|-.|-+| ++ +|+++.+|... + ....+++. .|+|+.+.+.++.|....+...+.+|++.++ +
T Consensus 34 iNp~De~AlE~AlrlkE~~gg~~VtvvsvG~~~~~~~~~lr~aLA-mGaD~ai~i~d~~~~~~D~~~tA~~La~~i~~~~ 112 (256)
T PRK03359 34 ISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLS-RGPDELIVVIDDQFEQALPQQTASALAAAAQKAG 112 (256)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 686568999999998885199579999937754455999999997-5897289975765444377999999999998729
Q ss_pred CCEEECCC---CCHHHHHHHHHHHHCCCCEECCCEEE---CCC-CEEEEEEECCCEEEEEEECCCCEEEEECCCCCCC
Q ss_conf 56044157---81034467888875177410132022---468-7279741069526899977984279951686433
Q gi|254780369|r 89 YKTIMASA---NAMGKDILPRVAAMLDVMQVSEVIEI---ISP-KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPP 159 (318)
Q Consensus 89 ~~~Vl~~~---t~~GrdlaprlAarL~~~~vsdvv~i---~~~-~~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~ 159 (318)
|++||++. .....-+.|+||..|+.|+++.+.++ +++ .+++|..-+|. .+++. ..|+++|+..+..+|
T Consensus 113 ~DLVl~G~~s~D~~~gqvg~~lAe~Lg~P~vt~v~~i~~~~~~~~~v~R~~e~g~--e~v~~-~lPavvtv~~~~n~P 187 (256)
T PRK03359 113 FDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKIISLTADTLTVERELEDEV--ETLSI-PLPAVIAVSTDINSP 187 (256)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHCCCHHEEEEEEEEECCCEEEEEEECCCCE--EEEEE-CCCEEEEEECCCCCC
T ss_conf 9999992510259998522899998298522007789995399899999857908--99997-699899998898866
No 13
>PRK08322 acetolactate synthase; Reviewed
Probab=97.42 E-value=0.0008 Score=44.49 Aligned_cols=117 Identities=21% Similarity=0.222 Sum_probs=76.1
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCE---------ECCCEEEEE
Q ss_conf 0007-456413677778335688999998763985974257886788888--8954015975---------457389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~---------v~P~lYia~ 266 (318)
|.+| +.|+-.|+|....+.. +.+.+||+++|+-|-.|-..- |.+|. ...+|..|.. =..||-|++
T Consensus 193 L~~AkrPvIi~G~g~~~~~a~-~~l~~lae~l~~PV~tt~~gk--g~~p~~hp~~~G~~g~~~~~~~~~~i~~aDlvl~i 269 (547)
T PRK08322 193 IQAAKNPLILIGAGANRKTAS-KALTEFVDKTGIPFFTTQMGK--GVIPETHPLSLGTAGLSQGDYVHCAIEHADLIINV 269 (547)
T ss_pred HHHCCCCEEECCCCCCCHHHH-HHHHHHHHHHCCCEEEECCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 972689789868885734099-999999998299789604677--77798874114555445669999877649868981
Q ss_pred EECCHHHHHHHH--CCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616726455551--6898899976659988-310276457523899999988609
Q gi|254780369|r 267 GISGAIQHISGM--KDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G~--~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-.=.-.....+ ...+.||-||.||.-. -....|++|+||+..+|.+|+++|
T Consensus 270 G~~l~~~~~~~~~~~~~~~vI~id~d~~~~~~~~~~~~~i~gD~~~~l~~l~~~l 324 (547)
T PRK08322 270 GHDVIEKPPFFMNPNGDKKVIHINFLPAEVDPVYFPQVEVVGDIANSLWQLKERL 324 (547)
T ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCHHHCCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 5425655732214789964999729988839765788225338999999999861
No 14
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=97.33 E-value=0.001 Score=43.77 Aligned_cols=113 Identities=20% Similarity=0.218 Sum_probs=73.7
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCC--HHHHHHCCCCE---------ECCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888--88954015975---------457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAP--NDWQIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p--~~~qIG~tG~~---------v~P~lYia~ 266 (318)
|.+|+ .++=+|+|..+ .. +.+.+||+.||+-|-.|-.. .|++| |...+|.+|.. =.-|+.|++
T Consensus 198 L~~A~rPvi~~G~G~~~--a~-~~l~~lAe~lg~PV~tt~~g--kg~i~~~hPl~~G~~G~~g~~~~~~~l~~aDlvl~l 272 (574)
T PRK09124 198 LNGSKAITLLCGSGCAG--AH-DELVALADTLKAPIVHALRG--KEHVEYDNPYDVGMTGLIGFSSGYHAMMNCDTLLML 272 (574)
T ss_pred HHCCCCCEEEECCCHHH--HH-HHHHHHHHHHCCCEEEECCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 85579978997910323--79-99999999859988960567--778887685114656667878999998438819997
Q ss_pred EECCHHHHHHHHCCCCEEEEEECCCCCCHH-HCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616726455551689889997665998831-0276457523899999988609
Q gi|254780369|r 267 GISGAIQHISGMKDSKVIVSINTDENAPIF-KISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G~~~s~~IvAIN~D~~ApIf-~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+= .+.........||-|+.||+.--. ...|++++||..++|.+|+++|
T Consensus 273 Gt~~--~~~~~~p~~~kvi~Id~d~~~lg~~~~~~~~i~gD~~~~L~~L~~~l 323 (574)
T PRK09124 273 GTDF--PYRQFYPTDAKIIQIDINPGSLGRRSPVDLGLVGDVKATLAALLPLL 323 (574)
T ss_pred CCCC--CCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 3677--75431699985999858989947767886468568999999999862
No 15
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=97.33 E-value=0.0012 Score=43.29 Aligned_cols=117 Identities=21% Similarity=0.231 Sum_probs=76.4
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCEE---------CCCEEEEE
Q ss_conf 0007-456413677778335688999998763985974257886788888--89540159754---------57389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVTV---------SPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~v---------~P~lYia~ 266 (318)
|..| +-|+=.|+|....+... .+++||++||+-|-.|-.. .|.+|. ...+|..|..- ..||-|++
T Consensus 203 L~~AkrPvIi~G~g~~~~~a~~-~l~~lae~l~~PV~tt~~g--kg~~~~~hp~~~G~~G~~g~~~~~~~l~~aDlvl~l 279 (574)
T PRK07979 203 LVAAKKPVVYVGGGAINAACHQ-QLKELVEKLNLPVVSSLMG--LGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAV 279 (574)
T ss_pred HHHCCCCEEEECCCCCCHHHHH-HHHHHHHHHCCCEEEEECC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 9727998899827734354899-9999998719877874045--678998774226777777868999998438869999
Q ss_pred EECCHHHH---HHHHCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672645---5551689889997665998-8310276457523899999988609
Q gi|254780369|r 267 GISGAIQH---ISGMKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH---~~G~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|.+=.-.. .........+|-|+.||+. .-.-.+|++|+||..++|.+|++.|
T Consensus 280 G~~l~~~~t~~~~~~~p~~~iI~Id~dp~~i~~~~~~~~~i~gD~~~~L~~l~~~l 335 (574)
T PRK07979 280 GVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLELL 335 (574)
T ss_pred EECCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 85168765676222599872799618989965656898678746999999999975
No 16
>pfam00205 TPP_enzyme_M Thiamine pyrophosphate enzyme, central domain. The central domain of TPP enzymes contains a 2-fold Rossman fold.
Probab=97.29 E-value=0.00099 Score=43.89 Aligned_cols=113 Identities=27% Similarity=0.233 Sum_probs=75.6
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCC--HHHHHHCCCCEE---------CCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888--889540159754---------57389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAP--NDWQIGQTGVTV---------SPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p--~~~qIG~tG~~v---------~P~lYia~ 266 (318)
|.+|+ -++-.|+|....+.. +.+.+||+.+|+-+-.|...-+ -+| |...+|..|..- ..|+.|++
T Consensus 8 l~~AkrPvii~G~g~~~~~a~-~~l~~lae~~~~Pv~~t~~~~~--~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~l 84 (138)
T pfam00205 8 LAAAKRPVILVGGGVRRSGAS-EELRALAEKLGIPVVTTLMGKG--AFPEDHPLYLGMLGMHGTPAANEALEEADLVLAI 84 (138)
T ss_pred HHHCCCEEEEECCCCCHHHHH-HHHHHHHHHHCCCEEEECCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 996899199989783522189-9999999984998792111256--7898886557757765779998655339999997
Q ss_pred EECCHHHHHHH-----HCCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHH
Q ss_conf 61672645555-----168988999766599883-1027645752389999998
Q gi|254780369|r 267 GISGAIQHISG-----MKDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEI 314 (318)
Q Consensus 267 GISGa~qH~~G-----~~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l 314 (318)
|-.=..+...| ..+..+||-|+.||+.-= ....|++|++|..++|.+|
T Consensus 85 G~~l~~~~~~~~~~~~~~~~~~vI~vd~d~~~l~~~~~~~~~i~~D~~~~l~~L 138 (138)
T pfam00205 85 GARFDDIRTTGPLPEFAPDAAKIIHIDIDPAEIGKNYPVDVPIVGDAKEALEAL 138 (138)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEEECHHHHHHHC
T ss_conf 888786512477433588886699996999997788889848984999999739
No 17
>PRK08617 acetolactate synthase; Reviewed
Probab=97.27 E-value=0.013 Score=36.69 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=70.6
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH---HHHCCCCEE---------CCCEEEE
Q ss_conf 0007-45641367777833568899999876398597425788678888889---540159754---------5738999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW---QIGQTGVTV---------SPELYIA 265 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~---qIG~tG~~v---------~P~lYia 265 (318)
|.+| +.|+-.|.|....+.. +.+++||+++|+-+-.|-.. .|.+|+++ ..|..|..- ..|+-|+
T Consensus 198 L~~AkrPvii~G~g~~~~~~~-~~l~~lae~~~iPv~tt~~g--kg~i~~~h~~~~~G~~G~~~~~~~~~~l~~aDlvl~ 274 (552)
T PRK08617 198 IKNAKLPVLLLGMRASDPEVT-AAIRRLLERTNLPVVETFQA--AGVISRELEDHFFGRVGLFRNQPGDELLKKADLVIT 274 (552)
T ss_pred HHHCCCCEEEECHHHCCHHHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE
T ss_conf 984658748832223336499-99999888749848844677--736697655242552466576999999861785899
Q ss_pred EEECCHHHHHHH---HCCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 961672645555---168988999766599883-10276457523899999988609
Q gi|254780369|r 266 AGISGAIQHISG---MKDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 266 ~GISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l~~~l 318 (318)
+|-+- +++-.+ ......||-|+.||.--= +...++.++||+.+++..|.++|
T Consensus 275 lG~~~-~~~~~~~~~~~~~~~ii~id~~~~~i~~~~~~~~~i~gD~~~~l~~l~~~l 330 (552)
T PRK08617 275 IGYDP-IEYEPRNWNKEGDRTIIHIDELPAEIDNYYQPERELIGDIAATLDLLAEKL 330 (552)
T ss_pred EECCC-CCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 72465-201542357789975999718879948764788027666999999999864
No 18
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=97.20 E-value=0.0017 Score=42.37 Aligned_cols=116 Identities=26% Similarity=0.297 Sum_probs=75.8
Q ss_pred HHHCCE-EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCE---------ECCCEEEEE
Q ss_conf 000745-6413677778335688999998763985974257886788888--8954015975---------457389999
Q gi|254780369|r 199 LSSAKI-VISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~i-VVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~---------v~P~lYia~ 266 (318)
|.+|+. |+-.|+|+...+... .+.+||++||+-+-.|-.. .|.+|. ...+|..|.. =..||-|++
T Consensus 204 L~~A~rPvIl~G~g~~~~~a~~-~l~~lae~l~~Pv~tt~~g--kg~~p~~hp~~~G~~G~~~~~~a~~~~~~aDlvl~l 280 (562)
T PRK06048 204 IANACRPVIYAGGGVISSNASA-ELVELAETLNAPVTTTLMG--IGSIPTEHPLYLGMLGMHGTKYANYAIQESDLIIAV 280 (562)
T ss_pred HHHCCCCEEEECCCCCCCHHHH-HHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEE
T ss_conf 9827997899577645122899-9999999859887863345--466776674225666666768999998547817885
Q ss_pred EECCHHH---HHHHHCCCCEEEEEECCCCCCHHH--CCCEEEECCHHHHHHHHHHCC
Q ss_conf 6167264---555516898899976659988310--276457523899999988609
Q gi|254780369|r 267 GISGAIQ---HISGMKDSKVIVSINTDENAPIFK--ISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~q---H~~G~~~s~~IvAIN~D~~ApIf~--~ad~giv~D~~~vlp~l~~~l 318 (318)
|-.=... ..........+|-|+.||. .|-+ ..|++|++|...+|.+|.+.+
T Consensus 281 G~rl~~~~~~~~~~~~~~~~ii~Id~d~~-~i~~~~~~~~~i~~D~~~~L~~L~~~~ 336 (562)
T PRK06048 281 GARFDDRVTGKLESFAPNARVIHIDVDPA-EISKNVKVDVPIVGDAKQVLKSLLKYV 336 (562)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHH-HHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 44467665687443688753799728989-956766787347558999999999853
No 19
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.17 E-value=0.0029 Score=40.91 Aligned_cols=117 Identities=22% Similarity=0.255 Sum_probs=74.3
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCC--HHHHHHCCCCE---------ECCCEEEEE
Q ss_conf 0007-45641367777833568899999876398597425788678888--88954015975---------457389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAP--NDWQIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p--~~~qIG~tG~~---------v~P~lYia~ 266 (318)
|.+| +-|+=.|+|....+.. +.+++||+.+|+-|-.|-.. .|.+| |...+|..|.. =..||-|++
T Consensus 228 L~~AkrPvIl~G~G~~~~~a~-~~l~~Lae~l~iPV~tt~~g--kg~~pe~hpl~~G~~G~~g~~~a~~~l~~aDlvL~i 304 (612)
T PRK07789 228 IAAARRPVLYVGGGVIRAEAS-EELRELAELTGIPVVTTLMA--RGAFPDSHPQNLGMPGMHGTVAAVAALQRSDLLIAL 304 (612)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCCCCEEEECCC--CCCCCCCCCHHCCCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 972799689989771346589-99999999619978983057--688998880104777777888999765058868886
Q ss_pred EECCHHHHH---HHHCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616726455---551689889997665998-8310276457523899999988609
Q gi|254780369|r 267 GISGAIQHI---SGMKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~---~G~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-.=.-... ........+|-||.||+. .-....|++|+||..++|++|+++|
T Consensus 305 G~rl~~~~tg~~~~~~p~~kvI~Id~D~~eig~~~~~dl~i~gD~~~~l~~L~~~l 360 (612)
T PRK07789 305 GARFDDRVTGKLDSFAPDAKVIHADIDPAEIGKNRHADVPIVGDVKEVIAELIEAL 360 (612)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 25567555687343599873899729989967665788468428999999999987
No 20
>PRK06154 hypothetical protein; Provisional
Probab=97.10 E-value=0.0015 Score=42.72 Aligned_cols=117 Identities=21% Similarity=0.207 Sum_probs=75.8
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCCEE---------CCCEEEEE
Q ss_conf 0007-4564136777783356889999987639859742578867888888--9540159754---------57389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGVTV---------SPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~~v---------~P~lYia~ 266 (318)
|.+| +-|+=.|+|........ .+.+||+.+|+-|-.|-.. .|.+|.+ ..+|..|..- .-||.|++
T Consensus 203 L~~A~rPvii~G~g~~~~~a~~-~l~~lae~~~~Pv~tt~~g--kg~~pe~hpl~~G~~G~~~~~~~~~~l~~aDlil~i 279 (556)
T PRK06154 203 LLAAKRPVIHAGQGVLQAGATP-ELVELAELLSIPVMTTLSG--KSGFPERHPLALGSGGMAWPATVAHFLRTADLLFGV 279 (556)
T ss_pred HHHCCCCEEEECCCCCCCHHHH-HHHHHHHHHCCCCCHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 9727898899688756314799-9999999859661325305--768876686445777777769999987216779996
Q ss_pred EECCH-HHHHHHHCCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672-645555168988999766599883-10276457523899999988609
Q gi|254780369|r 267 GISGA-IQHISGMKDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa-~qH~~G~~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=. ..+..-+...+.||-||.||..-= -...|+++++|...+|.+|++.|
T Consensus 280 G~~l~~~~~~~~~p~~~~iI~id~d~~~l~~~~~~~~~i~~D~~~~l~~l~~~l 333 (556)
T PRK06154 280 GASLTKSVFAAPLPAGKTIMHLTLDDSDLNKDYPLDHGLVGDARLVLRQMIDMI 333 (556)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 457776543554899883899528989958776888027658999999999997
No 21
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=97.03 E-value=0.0028 Score=40.97 Aligned_cols=117 Identities=21% Similarity=0.307 Sum_probs=75.3
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCE--------E-CCCEEEEE
Q ss_conf 0007-456413677778335688999998763985974257886788888--8954015975--------4-57389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVT--------V-SPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~--------v-~P~lYia~ 266 (318)
|.+| +-|+-.|.|+...... +.+++||++||+-+-+|-.. .|.+|+ ...+|..|.. + ..||-|++
T Consensus 193 L~~A~rPvil~G~gv~~~~a~-~~l~~lae~l~~Pv~tt~~g--kg~~~~~hpl~~G~~G~~g~~~~~~~~~~aDlvi~l 269 (548)
T PRK08978 193 LAQAKKPVLYVGGGVGMAQAV-PALREFLAATGMPAVATLKG--LGAVEADYPYYLGMLGMHGTKAANLAVQECDLLIVV 269 (548)
T ss_pred HHCCCCEEEEECCCCCCCCHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 974798299999670401589-99999999859878871346--765556897656777777869999997248869994
Q ss_pred EECCHHH---HHHHHCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 6167264---55551689889997665998-8310276457523899999988609
Q gi|254780369|r 267 GISGAIQ---HISGMKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~q---H~~G~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=... ..........+|-||.||+- .-+..+|++|+||+..+|++|.+.+
T Consensus 270 G~r~~~~~t~~~~~~~~~~~iI~vd~d~~~i~~~~~~~~~i~gD~~~~L~~L~~~~ 325 (548)
T PRK08978 270 GARFDDRVTGKLNTFAPHAKVIHLDIDAAEINKLRQADVALQGDLNALLPALQQPL 325 (548)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEEECCHHHHHHHHHHCC
T ss_conf 35467544587332488872799569989967765798357474999999987214
No 22
>PRK11269 glyoxylate carboligase; Provisional
Probab=97.02 E-value=0.0024 Score=41.44 Aligned_cols=116 Identities=19% Similarity=0.222 Sum_probs=78.2
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCE----------ECCCEEEE
Q ss_conf 0007-456413677778335688999998763985974257886788888--8954015975----------45738999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVT----------VSPELYIA 265 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~----------v~P~lYia 265 (318)
|.+| +-|+=.|.|....+.. +.+.+||+++|+-|-.|... .|.+|. ....|..|-. -..||-|+
T Consensus 200 L~~AkrPvIi~G~G~~~~~a~-~~l~~lae~l~iPV~tT~~g--kg~~p~dhpl~~G~~G~~~~~~~~~~~l~~aDlvl~ 276 (591)
T PRK11269 200 LNAAERPLIVAGGGVINADAS-DLLVEFAELTGVPVIPTLMG--WGAIPDDHPLMAGMVGLQTSHRYGNATLLASDFVLG 276 (591)
T ss_pred HHHCCCCEEEECCCCCCCCHH-HHHHHHHHHCCCCEEEEECC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEE
T ss_conf 972789879958880311159-99999998539978985067--787899885456774654104889998723786999
Q ss_pred EEECCHHHHHHHH---CCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHHHHC
Q ss_conf 9616726455551---68988999766599883-1027645752389999998860
Q gi|254780369|r 266 AGISGAIQHISGM---KDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEIEKN 317 (318)
Q Consensus 266 ~GISGa~qH~~G~---~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l~~~ 317 (318)
+|-.=.-.|..+. ...+.+|-||.||+.-= .-..|++|++|...+|.+|++.
T Consensus 277 iG~r~~~~~t~~~~~~~~~~~iI~Ididp~~igr~~~~d~~ivgD~~~~L~~L~~~ 332 (591)
T PRK11269 277 IGNRWANRHTGSVEVYTEGRKFVHVDIEPTQIGRVFGPDLGIVSDAKAALTLFVEV 332 (591)
T ss_pred ECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 76766434568754468886389945898996753589801644799999999999
No 23
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=96.91 E-value=0.003 Score=40.82 Aligned_cols=117 Identities=21% Similarity=0.191 Sum_probs=73.6
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCCE---------ECCCEEEEE
Q ss_conf 00074-564136777783356889999987639859742578867888888--954015975---------457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~~---------v~P~lYia~ 266 (318)
|.+|+ -|+-.|+|+...+.. +.+.+||+.||+-|-.|-..- |.+|.+ ..+|.-|.. =..||-|++
T Consensus 193 L~~A~rPvIi~G~gv~~~~a~-~~l~~Lae~lg~PV~tt~~~k--g~~p~~hpl~~G~~G~~g~~~~~~~l~~aDlvl~l 269 (579)
T TIGR03457 193 LAEAKFPVIISGGGVVMGDAV-EECKALAERLGAPVVNSYLHN--DSFPASHPLWVGPLGYQGSKAAMKLISDADVVLAL 269 (579)
T ss_pred HHCCCCCEEEECCCCCCCCHH-HHHHHHHHHHCCCCEECCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
T ss_conf 964899689979742443269-999999997397701154455--66798776556766653469999998525722542
Q ss_pred EECCH-----HHHHHH-HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672-----645555-16898899976659988-310276457523899999988609
Q gi|254780369|r 267 GISGA-----IQHISG-MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa-----~qH~~G-~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=. .++-.. ......||-||.||+.. -....|++|+||...++.+|++.|
T Consensus 270 G~rl~~~~t~~~~~~~~~p~~~~iI~Id~d~~~~g~~~~~~~~i~gD~~~~l~~l~~~l 328 (579)
T TIGR03457 270 GTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIGLVKKVTVGICGDAKAAAAEILQRL 328 (579)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 23455556556776344799984999969989958746788117626999999999986
No 24
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=96.88 E-value=0.0032 Score=40.68 Aligned_cols=116 Identities=17% Similarity=0.167 Sum_probs=75.4
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEE----HHHHHCCCCCHHHHHHCCCC--------EECCCEEEE
Q ss_conf 00074-564136777783356889999987639859742----57886788888895401597--------545738999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGAT----RDAVDAGFAPNDWQIGQTGV--------TVSPELYIA 265 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~S----Rp~vD~gw~p~~~qIG~tG~--------~v~P~lYia 265 (318)
|.+|+ -|+-.|+|+...+.. +.+++||++||+-|-+| |-+.+.. |...+|..|. .-..||-|.
T Consensus 194 L~~AkrPvii~G~g~~~~~a~-~~l~~lae~l~~PV~~t~~~gk~~~~~~---hp~~~G~~~~~~~~~~~~l~~aDlvl~ 269 (521)
T PRK07092 194 LDAARNPALVVGPAVDRAGAW-DDAVRLAERHRAPVWVAPMSGRCSFPER---HPLFAGFLPASREGISALLDGHDLVLV 269 (521)
T ss_pred HHCCCCCEEEECCCCCCCCHH-HHHHHHHHHHCCCEEEECCCCCCCCCCC---CCCCCCCCCCCHHHHHHHHHHCCEEEE
T ss_conf 972899789987670403549-9999999986997787327664246899---864324254438999999852899999
Q ss_pred EEECCHHHHHHHH----CCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 9616726455551----6898899976659988310276457523899999988609
Q gi|254780369|r 266 AGISGAIQHISGM----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 266 ~GISGa~qH~~G~----~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
+|-+=...|..+. .....+|-|+.||+..-+...+..+++|...++.+|.+++
T Consensus 270 lG~~l~~~~~~~~~~~~~~~~~~i~v~~d~~~~~~~~~~~~i~~d~~~~l~~l~~~~ 326 (521)
T PRK07092 270 IGAPVFTYHVEGPGPHLPAGAELVQLTDDPGEAAWAPMGDAIVGDIRLALRALLARP 326 (521)
T ss_pred ECCCCCCCCCCCCHHCCCCCCEEEEECCCHHHHCCCCCCCEEECCHHHHHHHHHHHC
T ss_conf 688752131478430079997799973787984678768536647999999999845
No 25
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=96.87 E-value=0.0056 Score=39.08 Aligned_cols=275 Identities=16% Similarity=0.147 Sum_probs=128.7
Q ss_pred HHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHH-HH
Q ss_conf 87389347999818926888998707897399994481010001232245578740345604415781034467888-87
Q gi|254780369|r 31 QKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRV-AA 109 (318)
Q Consensus 31 ~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~Vl~~~t~~Grdlaprl-Aa 109 (318)
++.|-+.---+.|.....+.+.+.+. +-=+.+.+.|+.-.-|.++.|+++ -.++.+++..+..---.+.+-+ .+
T Consensus 24 ~~~Gv~~vFg~pG~~~~~l~~al~~~-~~i~~v~~~hE~~A~~~AdGyar~----tgk~~v~~~t~GpG~~N~~~al~~A 98 (564)
T PRK08155 24 ERQGIRIVTGIPGGAILPLYDALSQS-TQIRHILARHEQGAGFIAQGMART----TGKPAVCMACSGPGATNLVTAIADA 98 (564)
T ss_pred HHCCCCEEEEECCCCHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHH----HCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf 98799889996883669999999757-997399248789999999999998----5998899994385799899999999
Q ss_pred HCCC-CEE--CCCEEE--CCCCE--------EEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCE-EEEECC
Q ss_conf 5177-410--132022--46872--------797410695268999779842799516864333355666661-562111
Q gi|254780369|r 110 MLDV-MQV--SEVIEI--ISPKI--------FKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASI-HKISAE 175 (318)
Q Consensus 110 rL~~-~~v--sdvv~i--~~~~~--------~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~~~~~~~~~v-~~~~~~ 175 (318)
..+. |++ +.-... .+... +.+|+ -|... ...+.-.+..+-..+|..+- ....+.| ..+..+
T Consensus 99 ~~~~~Pll~itg~~~~~~~g~~~~q~~d~~~~~~~~--tk~~~--~v~~~~~~~~~~~~A~~~A~-~~~~GPV~l~iP~d 173 (564)
T PRK08155 99 RLDSIPLICITGQVPASMIGTDAFQEVDTYGISIPI--TKHNY--LVRDIEELPQVISDAFRIAQ-SGRPGPVWIDIPKD 173 (564)
T ss_pred HHHCCCEEEEECCCCHHHCCCCCCCCCHHHHCCCCC--CCEEE--EECCHHHHHHHHHHHHHHHH-HCCCCCEEEECCHH
T ss_conf 970998499968897665699954000044202552--20169--95999996899999999986-28998758746803
Q ss_pred CCCCCCEE---EEEEEEE-ECCCCCCC-------HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCC
Q ss_conf 02445302---5885444-31456667-------0007-45641367777833568899999876398597425788678
Q gi|254780369|r 176 VLEKYISN---TRFIKEE-RTSLSPTD-------LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAG 243 (318)
Q Consensus 176 ~~~~~~~~---~~~i~~~-~~~~~~v~-------L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~g 243 (318)
........ ....... ....+.-+ |.+| +-|+-.|.|+...+... .+.+||+++|+-+-.|-..- |
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~A~rPviv~G~g~~~~~a~~-~~~~lae~l~~Pv~tt~~~k--g 250 (564)
T PRK08155 174 VQTAVIEIEALPAPAEKDAAPAFSEESIRDAAAMINAAKRPVLYLGGGVINAPARV-RAIELAEKAQLPTTMTLMAL--G 250 (564)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH-HHHHHHHHHCCCEEECCCCC--C
T ss_conf 64272464447776667889999999999999999854498897068745501999-99999998698977332456--7
Q ss_pred CCCHHH--HHHCCCCE--------E-CCCEEEEEEECCHHHHHHH---HCCCCEEEEEECCCCC-CHHHCCCEEEECCHH
Q ss_conf 888889--54015975--------4-5738999961672645555---1689889997665998-831027645752389
Q gi|254780369|r 244 FAPNDW--QIGQTGVT--------V-SPELYIAAGISGAIQHISG---MKDSKVIVSINTDENA-PIFKISDYFIVGDIF 308 (318)
Q Consensus 244 w~p~~~--qIG~tG~~--------v-~P~lYia~GISGa~qH~~G---~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~ 308 (318)
.+|.++ .+|..|.. + .+|+-|++|-+=..+++.. ......||-||.||.- .=+..+|++|++|..
T Consensus 251 ~~p~~hpl~~G~~g~~~~~~~~~~l~~aDlvl~lG~~l~~~~~~~~~~~~p~~~ii~id~dp~~l~~~~~~~~~i~~D~~ 330 (564)
T PRK08155 251 MLPKAHPLSLGMLGMHGARSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVD 330 (564)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEEECCHHHHCCCCCCCEEEEECHH
T ss_conf 77666853346543666288999984287368872016765657664428877369981898995775589768973899
Q ss_pred HHHHHHHHCC
Q ss_conf 9999988609
Q gi|254780369|r 309 KILPEIEKNL 318 (318)
Q Consensus 309 ~vlp~l~~~l 318 (318)
+++.+|++++
T Consensus 331 ~~l~~L~~~~ 340 (564)
T PRK08155 331 DVLAQLIPLV 340 (564)
T ss_pred HHHHHHHHHC
T ss_conf 9999998735
No 26
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=96.78 E-value=0.0055 Score=39.15 Aligned_cols=117 Identities=22% Similarity=0.199 Sum_probs=74.2
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCCE---------ECCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888889--54015975---------457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~~---------v~P~lYia~ 266 (318)
|.+|+ -|+=.|+|....+.+ +.+.+||+.||+-|-.|-..- |.+|.++ .+|..|.. -..||-|++
T Consensus 197 L~~A~rPvIi~G~g~~~~~a~-~~l~~lae~l~~Pv~tt~~~k--g~~~~~hpl~~G~~G~~g~~~a~~~l~~aDlvl~l 273 (589)
T PRK07525 197 LSEAKFPVILSGAGVVLSGAI-EECKALAERLDAPVCCGYLHN--DAFPGSHPLWVGPLGYNGSKAAMELIAQADVVLAL 273 (589)
T ss_pred HHCCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEECCCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 972899789989871421189-999999998497867530257--87567776556766654469999998425835774
Q ss_pred EEC----CH-HHHHHHH-CCCCEEEEEECCCCCCHH-HCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616----72-6455551-689889997665998831-0276457523899999988609
Q gi|254780369|r 267 GIS----GA-IQHISGM-KDSKVIVSINTDENAPIF-KISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GIS----Ga-~qH~~G~-~~s~~IvAIN~D~~ApIf-~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+ +. .++-.-. .....||-||.||+---. ...|++|++|...++.+|+++|
T Consensus 274 G~rl~~~~t~~~~~~~~~p~~~~iI~Id~d~~~ig~~~~~~~~i~~D~~~~l~~L~~~l 332 (589)
T PRK07525 274 GTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIGLTKKVSVGICGDAKAVAREILARL 332 (589)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 03346555556776222788983899729989967756786458706999999999986
No 27
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=96.71 E-value=0.0055 Score=39.16 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=74.7
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC---------EECCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888889--5401597---------5457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV---------TVSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~---------~v~P~lYia~ 266 (318)
|.+|+ -|+=.|.|....+... .+.+||++||+-|-.|-.. .|.+|.++ .+|..|. ....|+-|++
T Consensus 204 L~~AkrPvIl~G~G~~~~~a~~-~l~~lae~l~~Pv~tT~~g--kg~~p~~hp~~~G~~G~~g~~~~~~~~~~aDlvl~v 280 (572)
T PRK06456 204 LINAERPIILVGTGVVWSNATP-EVLELAELLHIPIVSTFPG--KSAIPHDHPLYFGAMGYYGRAEASMAALESDAMLVV 280 (572)
T ss_pred HHHCCCCEEEEECCCCCCCCHH-HHHHHHHHHCCCCEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 9818998899955824143649-9999999839981220145--555345786556877876878999987514859998
Q ss_pred EECCHHHHH----HHHCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616726455----551689889997665998-8310276457523899999988609
Q gi|254780369|r 267 GISGAIQHI----SGMKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~----~G~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=..+-. ......+.+|-||.||.- --.-..|+++++|...+|.+|+++|
T Consensus 281 G~~l~~~~~~~~~~~~~~~~~~I~idid~~~~~~~~~~d~~i~~D~~~~l~~l~~~l 337 (572)
T PRK06456 281 GARLSDRTFTSYDEMIETRKKFIMINIDPTDGERAIKVDVGLYGNAKILLRELIKAI 337 (572)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 067787537775544688871799838978945564787557647999999999976
No 28
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=96.68 E-value=0.0069 Score=38.52 Aligned_cols=114 Identities=21% Similarity=0.269 Sum_probs=71.9
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCCE---------ECCCEEEEE
Q ss_conf 00074-564136777783356889999987639859742578867888888--954015975---------457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~~---------v~P~lYia~ 266 (318)
|.+|+ -|+=.|.|+....-. +.+.+||+.+|+-|-.|-.. .|.+|.+ ..+|..|.. -.-||-|++
T Consensus 221 L~~AkrPvIi~G~g~~~~~a~-~~l~~lae~~~iPV~tt~~g--kg~~~e~hpl~~G~~G~~g~~~a~~ai~~aDlvl~v 297 (615)
T PRK07418 221 IEEAERPLLYVGGGAISAGAH-AELKELAERFQIPVTTTLMG--KGAFDERHPLSVGMLGMHGTAYANFAVTECDLLIAV 297 (615)
T ss_pred HHHCCCCEEEECCCCCCHHHH-HHHHHHHHHHCCCCEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 984799789989870511289-99999999758970231035--566566786445555777888888766348869996
Q ss_pred EE------CCHHHHHHHHCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61------67264555516898899976659988-310276457523899999988609
Q gi|254780369|r 267 GI------SGAIQHISGMKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GI------SGa~qH~~G~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
|- +|-..+ ......+|-||.||.-- -....|++|+||+..+|.+|++++
T Consensus 298 G~r~~d~~tg~~~~---~~~~~kiI~Ididp~~igk~~~~~v~i~gD~~~~L~~L~~~~ 353 (615)
T PRK07418 298 GARFDDRVTGKLDE---FAPRAKVIHIDIDPAEVGKNRRPDVPIVGDVRKVLVKLLERS 353 (615)
T ss_pred CCCCCCCCCCCCHH---CCCCCCEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 57677655677000---277774688628999958666798458467999999999975
No 29
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.67 E-value=0.0039 Score=40.09 Aligned_cols=115 Identities=28% Similarity=0.285 Sum_probs=74.6
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCCEEC---------CCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888889--5401597545---------7389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGVTVS---------PELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~~v~---------P~lYia~ 266 (318)
|.+|+ -|+=.|.|+...+.. +.+.+||+++|+-|-.|-.. .|.+|.++ .+|..|..-. .||-|++
T Consensus 218 L~~AkrPvIl~G~g~~~~~a~-~~l~~lae~l~iPV~tt~~g--kg~~~e~hpl~~G~~G~~g~~~a~~~l~~aDliL~l 294 (587)
T PRK06965 218 LLSAKRPYIYTGGGVILANAS-RELRQLADLLGYPVTNTLMG--LGAYPASDKKFLGMLGMHGTYEANMAMQHCDVLIAI 294 (587)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEC
T ss_conf 985689889707882043489-99999999978880622045--777788774336767676879999998518878754
Q ss_pred EEC------CHHHHHHHHCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616------7264555516898899976659988-310276457523899999988609
Q gi|254780369|r 267 GIS------GAIQHISGMKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GIS------Ga~qH~~G~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+ |-..|. ....+.||-||.||+.- -.-..|++|+||..++|.+|++.|
T Consensus 295 G~rl~~~~~g~~~~~--~~~~~kii~Ididp~~l~~~~~~d~~i~gD~~~~L~~L~~~l 351 (587)
T PRK06965 295 GARFDDRVIGDPAHF--ASRPRKIIHIDIDPSSISKRVKVDIPIVGDVKEVLKELIEQL 351 (587)
T ss_pred CCCCCCCCCCCCCCC--CCCCCCCEEECCCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 643666421672001--577664026558989965635788026557999999999987
No 30
>PRK08611 pyruvate oxidase; Provisional
Probab=96.67 E-value=0.0076 Score=38.25 Aligned_cols=112 Identities=25% Similarity=0.285 Sum_probs=70.6
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCEE---------CCCEEEEE
Q ss_conf 0007-456413677778335688999998763985974257886788888--89540159754---------57389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVTV---------SPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~v---------~P~lYia~ 266 (318)
|..| +-|+=.|+|.... .+.+.+||++||+-|-+|-.. .|.+|. ...+|..|..- ..||-|++
T Consensus 200 L~~AkrPvIi~G~G~~~a---~~~l~~Lae~l~~PV~tt~~g--kg~~pedhpl~~G~~G~~g~~~a~~~l~~aDlvl~l 274 (576)
T PRK08611 200 INKAKKPVILAGVGAKHA---KDELLEFAEKAKIPIIHTLPA--KGIIPDDHPYSLGNLGKIGTKPAYEAMQEADLLIMV 274 (576)
T ss_pred HHHCCCCEEECCHHHHHH---HHHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 985669877637568899---999999999979898951455--786687673003654345758999986237879997
Q ss_pred EECCH-HHHHHHHCCCCEEEEEECCCCCCHH-HCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672-6455551689889997665998831-0276457523899999988609
Q gi|254780369|r 267 GISGA-IQHISGMKDSKVIVSINTDENAPIF-KISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa-~qH~~G~~~s~~IvAIN~D~~ApIf-~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+-. ..+ .-.-..+|-|+.||+.-=. -..|++|++|..++|.+|++++
T Consensus 275 Gt~~~~~~~---~p~~~~~I~vd~dp~~lg~~~~~~~~i~~D~~~~l~~L~~~~ 325 (576)
T PRK08611 275 GTNYPYVDY---LPKKAKAIQIDTNPANIGKRYPVNVGIVGDSKKALHQLTENI 325 (576)
T ss_pred CCCCCCCCC---CCCCCCEEEEECCHHHHCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 998775234---788982799828989957756899616546999999999841
No 31
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=96.61 E-value=0.01 Score=37.46 Aligned_cols=276 Identities=15% Similarity=0.121 Sum_probs=126.8
Q ss_pred HHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHH-HHHHHHH
Q ss_conf 998738934799981892688899870789739999448101000123224557874034560441578103-4467888
Q gi|254780369|r 29 AAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMG-KDILPRV 107 (318)
Q Consensus 29 ~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~Vl~~~t~~G-rdlaprl 107 (318)
.=++.|-+.---+.|...-.+.+.+.+..|. +++...|+.-.-|.++.|+++= .++.+++..+..-. .-+.+-.
T Consensus 19 ~L~~~GV~~vFGvpG~~~~~l~dal~~~~~i-~~v~~rhE~~A~~~Adgyar~t----g~~gv~~~t~GpG~~N~~~gl~ 93 (566)
T PRK07282 19 TLRNLGVDTIFGYPGGAVLPLYDAIYNFEGI-RHILARHEQGALHEAEGYAKST----GKLGVAVVTSGPGATNAITGIA 93 (566)
T ss_pred HHHHCCCCEEEEECCCCHHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHHHHH----CCCEEEEEECCCCHHHHHHHHH
T ss_conf 9998799999992773579999998745997-4980287899999999999997----9988999906857998999999
Q ss_pred HHHCCCCEECCCEE-EC----CCCE--------EEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCE-EEEE
Q ss_conf 87517741013202-24----6872--------797410695268999779842799516864333355666661-5621
Q gi|254780369|r 108 AAMLDVMQVSEVIE-II----SPKI--------FKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASI-HKIS 173 (318)
Q Consensus 108 AarL~~~~vsdvv~-i~----~~~~--------~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~~~~~~~~~v-~~~~ 173 (318)
.+..+...+=-.+. .. +... +.+|+ -|...++. +.-.+..+-..+|..+- ..+.+.+ ..+.
T Consensus 94 ~A~~~~~Pvl~itG~~~~~~~~~~~~q~~d~~~~~~~v--tk~~~~v~--~~~~~~~~l~~A~~~a~-~~~~GPV~l~iP 168 (566)
T PRK07282 94 DAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPI--TKYNYQIR--ETADIPRIITEAVHIAT-TGRPGPVVIDLP 168 (566)
T ss_pred HHHHHCCCEEEEECCCCCCCCCCCCCCCCCHHHHHCCC--CCCEEEEC--CHHHHHHHHHHHHHHHH-CCCCCEEEEECC
T ss_conf 99983999799968887133898854410388662662--34313308--89999999999999986-189831999806
Q ss_pred CCCCCCCC-----EEEEEEEEEE-CCCCCC-------CHHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHH
Q ss_conf 11024453-----0258854443-145666-------700074-564136777783356889999987639859742578
Q gi|254780369|r 174 AEVLEKYI-----SNTRFIKEER-TSLSPT-------DLSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDA 239 (318)
Q Consensus 174 ~~~~~~~~-----~~~~~i~~~~-~~~~~v-------~L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~ 239 (318)
.+...... ...+.-...+ .....- .|.+|+ -|+=.|.|+...+.. +.+.+||+.||+-|-.|-..
T Consensus 169 ~Dv~~~~~~~~~~p~~~~~~~~~~~~p~~~~i~~a~~~L~~AkrPvii~G~g~~~~~a~-~~l~~lae~l~iPv~tt~~g 247 (566)
T PRK07282 169 KDVSALETDFINDPEVNLPSYQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAA-KELVEFAERYQIPVVTSLLG 247 (566)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEEECCC
T ss_conf 54753504555675556788888889999999999999864799589988883724599-99999999869989950466
Q ss_pred HHCCCCC--HHHHHHCCCC---------EECCCEEEEEEECCHHHHHH---HHCCCCEEEEEECCCCCC-HHHCCCEEEE
Q ss_conf 8678888--8895401597---------54573899996167264555---516898899976659988-3102764575
Q gi|254780369|r 240 VDAGFAP--NDWQIGQTGV---------TVSPELYIAAGISGAIQHIS---GMKDSKVIVSINTDENAP-IFKISDYFIV 304 (318)
Q Consensus 240 vD~gw~p--~~~qIG~tG~---------~v~P~lYia~GISGa~qH~~---G~~~s~~IvAIN~D~~Ap-If~~ad~giv 304 (318)
.|.+| |...+|..|. .-.+||-|++|-.=..+... -......+|-|+.||+-- -....|++|+
T Consensus 248 --kg~~~~~hpl~lG~~G~~~~~~~~~~l~~aDlil~lG~rl~~~~~~~~~~~~~~~~ii~Id~d~~~l~~~~~~~~~i~ 325 (566)
T PRK07282 248 --QGTIATSHPLFLGMGGMHGSYAANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIGKIIKTDIPVV 325 (566)
T ss_pred --CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEE
T ss_conf --887766676202556677888998754158769997776776544787434566534898489899677445781263
Q ss_pred CCHHHHHHHHHHC
Q ss_conf 2389999998860
Q gi|254780369|r 305 GDIFKILPEIEKN 317 (318)
Q Consensus 305 ~D~~~vlp~l~~~ 317 (318)
+|+.++|.+|++.
T Consensus 326 gD~~~~l~~L~~~ 338 (566)
T PRK07282 326 GDAKKALQMLLAE 338 (566)
T ss_pred CCHHHHHHHHHHC
T ss_conf 1699999999615
No 32
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=96.60 E-value=0.0082 Score=38.06 Aligned_cols=116 Identities=17% Similarity=0.211 Sum_probs=73.5
Q ss_pred HHHCC--EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCE--------------ECC
Q ss_conf 00074--56413677778335688999998763985974257886788888--8954015975--------------457
Q gi|254780369|r 199 LSSAK--IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVT--------------VSP 260 (318)
Q Consensus 199 L~~A~--iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~--------------v~P 260 (318)
|.+|+ +|+. |.|+....-. +-+.+||+++|+-|-.|... .|.+|. ...+|..|.. =..
T Consensus 213 L~~AkrPvii~-G~gv~~~~a~-~~l~~lae~~g~Pv~tt~~g--kg~~~e~hpl~~G~~g~~~~~~~~~~~~~~~i~~a 288 (581)
T PRK06112 213 LAQARRPVVVA-GGGVHISGAS-DALAALQSLAGLPVATTNMG--KGAVDETHPLSLGVVGSAMGPRSPGRHFRDLVREA 288 (581)
T ss_pred HHCCCCCEEEE-CCCCCCCCHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCC
T ss_conf 97289929998-9770204489-99999999859888961223--78668888654643210457520579999987358
Q ss_pred CEEEEEEECCHHH---HHHHHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 3899996167264---555516898899976659988310276457523899999988609
Q gi|254780369|r 261 ELYIAAGISGAIQ---HISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 261 ~lYia~GISGa~q---H~~G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
||.|++|-.=... +..-.-....+|-|+.||..-=..+.++.++||...+|.+|.+.|
T Consensus 289 Dlvl~iG~~~~~~~t~~~~~~~~~~~~I~Id~d~~~~g~~~~~~~lvgD~~~~l~~L~~~l 349 (581)
T PRK06112 289 DVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVGRNYEAMRLVGDARLTLQALGDAL 349 (581)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 8799964535767787533368877178843898996776776268644999999999987
No 33
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.54 E-value=0.0091 Score=37.75 Aligned_cols=116 Identities=25% Similarity=0.317 Sum_probs=72.8
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCC--HHHHHHCCCC---------EECCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888--8895401597---------5457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAP--NDWQIGQTGV---------TVSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p--~~~qIG~tG~---------~v~P~lYia~ 266 (318)
|.+|+ -|+-.|.|+...+.. +.+.+||++||+-|-.|-..- |.+| |...+|..|. .-..|+-|++
T Consensus 201 L~~akrPvi~~G~g~~~~~a~-~~l~~lae~l~~Pv~tt~~gk--g~~~~~hpl~~G~~G~~g~~~a~~~~~~aDlvl~l 277 (560)
T PRK08527 201 IKEAKKPLFYLGGGAISSNAS-ELIRELVKKTGIPAVETLMAL--GTLRSDDPLNLGMAGMHGSYAANMALSECDLLISL 277 (560)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEECCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 985689869917760144699-999999998599856444567--77777884225877776769999998348869981
Q ss_pred EECCHHHHHHH----HCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672645555----1689889997665998-8310276457523899999988609
Q gi|254780369|r 267 GISGAIQHISG----MKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G----~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=.. ...| ......||-|+.||.. .=+...|+.|++|+.++|.+|++++
T Consensus 278 G~rl~~-~~t~~~~~~~~~~~ii~id~d~~~i~~~~~~~~~i~~D~~~~l~~L~~~l 333 (560)
T PRK08527 278 GARFDD-RVTGKLSEFAKHAKIIHVDIDPSSISKIINADYPIVGDLKEVLKELLEEL 333 (560)
T ss_pred CCCCCC-CCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 576775-55687663468760467528989966724788305348999999999975
No 34
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=96.37 E-value=0.024 Score=35.07 Aligned_cols=112 Identities=18% Similarity=0.234 Sum_probs=73.7
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCCE---------ECCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888889--54015975---------457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~~---------v~P~lYia~ 266 (318)
|..|+ .++-.|.|+.+.. .+ +.+||++||+-|..|-. -.|++|+++ .+|.+|.. -..||-|++
T Consensus 198 L~~AkrPvii~G~G~~~a~--~e-l~~lae~l~~PV~tt~~--gkg~i~~dhpl~~G~~G~~g~~~a~~~l~~aDlvl~i 272 (578)
T PRK06546 198 INDAKKVTLFCGAGVAGAH--AE-VLELAEKIKAPIGHALR--GKDWIQYDNPFDVGMSGLLGYGAAAEAMNDADLLILL 272 (578)
T ss_pred HHHCCCCEEEECCCCCCHH--HH-HHHHHHHHCCCEEEECC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEE
T ss_conf 8507798899377741279--99-99999987988898623--3466778883005657676868999865157879998
Q ss_pred EECCHHHHHHHHCCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672645555168988999766599883-10276457523899999988609
Q gi|254780369|r 267 GISGAIQHISGMKDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G~~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=.... -..+ ..+|-||.||+.-= ....|++|+||..++|.+|++.|
T Consensus 273 Gt~~~~~~--~~p~-~~ii~Id~d~~~lg~~~~~~~~i~gD~~~~L~~L~~~l 322 (578)
T PRK06546 273 GTDFPYNQ--FLPD-VRTAQVDIAPEHLGRRTDVDIAVHGDVAATIRALLPLV 322 (578)
T ss_pred CCCCCCCC--CCCC-CEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 16888222--3877-70799718878846656787557667999999999975
No 35
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=96.30 E-value=0.019 Score=35.69 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=70.7
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC--EECCCEEEEEEECC--H
Q ss_conf 00074-5641367777833568899999876398597425788678888889--5401597--54573899996167--2
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV--TVSPELYIAAGISG--A 271 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~--~v~P~lYia~GISG--a 271 (318)
|.+|+ -|+=+|+|....+.. +.+.+||+++|+-|-.|-.. .|.+|+++ ..|.... .-..+|-|++|-+= .
T Consensus 217 l~~AkrPvii~G~G~~~~~a~-~~l~~lae~lg~PV~tt~~~--~~~~~~~hpl~~G~~~~~~l~~aDlvl~vG~~~~~~ 293 (568)
T PRK08327 217 LAAAERPVIITQRGGRRAEAF-ASLDRLAEELGIPVVEYNGE--VVNIPSDHPLFLGGDDKADLADADLVLVVDSEVPWI 293 (568)
T ss_pred HHHCCCCEEECCCCCCHHHHH-HHHHHHHHHCCCCEEECCCC--CCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCC
T ss_conf 983679747517873357899-99999987549967955765--664699887655667787875088999946777655
Q ss_pred HHHHHHHCCCCEEEEEECCCC---CCHHH-CCCEEEECCHHHHHHHHHHCC
Q ss_conf 645555168988999766599---88310-276457523899999988609
Q gi|254780369|r 272 IQHISGMKDSKVIVSINTDEN---APIFK-ISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 272 ~qH~~G~~~s~~IvAIN~D~~---ApIf~-~ad~giv~D~~~vlp~l~~~l 318 (318)
.++.. -+....||-|+.||. -+.+. .+|++|++|..+++.+|.+.|
T Consensus 294 ~~~~~-~~~~~~ii~id~dp~~~~~~~~~~~~dl~i~~d~~~~l~~l~~~l 343 (568)
T PRK08327 294 PKELR-PKADARVIQIDVDPLKSRIPMWGFPCDLAIQADTAVALDQLEEAL 343 (568)
T ss_pred CCCCC-CCCCCEEEEEECCHHHCCCCCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 32346-787862899707866524654466575357558999999999987
No 36
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=96.29 E-value=0.016 Score=36.26 Aligned_cols=115 Identities=22% Similarity=0.282 Sum_probs=72.8
Q ss_pred HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC---------EECCCEEEE
Q ss_conf 0007--45641367777833568899999876398597425788678888889--5401597---------545738999
Q gi|254780369|r 199 LSSA--KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV---------TVSPELYIA 265 (318)
Q Consensus 199 L~~A--~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~---------~v~P~lYia 265 (318)
|.+| .+|+ .|.|+...+... .+.+||++||+-|-.|-. -.|.+|.++ .+|..|. .-..||-|+
T Consensus 200 L~~A~rPvIl-~G~g~~~~~a~~-~l~~Lae~l~~PV~tt~~--gkg~~pe~hpl~~G~~G~~g~~~~~~~l~~aDlvl~ 275 (586)
T PRK06276 200 IAEAERPVIL-AGGGVQIANATP-ELIKLSELAQIPVCTTLM--GKGAFPEEHPLALGMVGMHGTKAANYSVYESDVLIA 275 (586)
T ss_pred HHHCCCCEEE-ECCCCCCCCCCH-HHHHHHHHHCCCEEECCC--CCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 9727996899-778705143709-999999984998251114--567768898021366776575999999733886999
Q ss_pred EEECCHHHHH---HHHCCCCEEEEEECCCCCCHHH--CCCEEEECCHHHHHHHHHHCC
Q ss_conf 9616726455---5516898899976659988310--276457523899999988609
Q gi|254780369|r 266 AGISGAIQHI---SGMKDSKVIVSINTDENAPIFK--ISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 266 ~GISGa~qH~---~G~~~s~~IvAIN~D~~ApIf~--~ad~giv~D~~~vlp~l~~~l 318 (318)
+|..=.-... ........+|-||.||.. |-+ ..|++|++|...+|.+|++.|
T Consensus 276 lG~rl~~~~t~~~~~~~p~~kiI~Id~dp~~-ig~~~~~d~~i~~D~~~~L~~L~~~l 332 (586)
T PRK06276 276 IGCRFSDRITGDISSFAPNAKIIHIDIDPAE-IGKNVRVDIPIVGDAKAVLKDLLIHL 332 (586)
T ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEECCHHH-HCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 5230576566786657887515897189999-67766787325337999999999987
No 37
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.28 E-value=0.016 Score=36.19 Aligned_cols=116 Identities=22% Similarity=0.202 Sum_probs=72.4
Q ss_pred HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCCEE---------CCCEEEE
Q ss_conf 0007--4564136777783356889999987639859742578867888888--9540159754---------5738999
Q gi|254780369|r 199 LSSA--KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGVTV---------SPELYIA 265 (318)
Q Consensus 199 L~~A--~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~~v---------~P~lYia 265 (318)
|.+| .+|+. |+|....... +.+.+||+.||+-|-.|-.. .|.+|.+ ..+|.-|..- ..||-|+
T Consensus 203 L~~A~rPvil~-G~g~~~~~a~-~~l~~lae~lg~PV~tt~~g--kg~~p~~hp~~~G~~G~~g~~~a~~~~~~aDlvl~ 278 (572)
T PRK08979 203 LLAAKKPVLYV-GGGAIISGCD-KQILALAEKLNIPVVSTLMG--LGAFPGTHKNSLGMLGMHGRYEANMAMHNADLIFG 278 (572)
T ss_pred HHHCCCCEEEE-CCCCCCCCHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEE
T ss_conf 98279988997-8753535689-99999998639975522026--78999888655677877776999999841878998
Q ss_pred EEECCHHHHHHHH---CCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 9616726455551---6898899976659988-310276457523899999988609
Q gi|254780369|r 266 AGISGAIQHISGM---KDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 266 ~GISGa~qH~~G~---~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
+|-+=..+...+. .....+|-|+.||..- -.-..|++|+||...+|.+|++.|
T Consensus 279 lG~rl~~~~t~~~~~~~p~~~iI~id~dp~~~~~~~~~d~~i~gd~~~~l~~l~~~l 335 (572)
T PRK08979 279 IGVRFDDRTTNNVEKYCPNATILHIDIDPSSISKTVRVDIPIVGSADKVLDSMLALL 335 (572)
T ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 256667555677222587660688507989966754677337626999999999988
No 38
>KOG3180 consensus
Probab=96.27 E-value=0.07 Score=32.12 Aligned_cols=119 Identities=13% Similarity=0.107 Sum_probs=87.9
Q ss_pred HHHHCCCEEEEEECCC-HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--CCCEEECCC---CCHHHHH
Q ss_conf 9873893479998189-268889987078973999944810100012322455787403--456044157---8103446
Q gi|254780369|r 30 AQKISHDIHVLVLGDN-IENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--DYKTIMASA---NAMGKDI 103 (318)
Q Consensus 30 A~~lg~~v~avv~G~~-~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~~~~Vl~~~---t~~Grdl 103 (318)
-++|..++.++-+|.. +.+....++.. |+|+-.+++...-....|-.++++|..+++ ++++||++- ......-
T Consensus 54 Ek~l~eeviavs~G~aqs~~ilRt~LA~-Gadr~~hv~~~~~~~lepl~vAKiLk~~vekek~~lVllGKQAIDDD~nqT 132 (254)
T KOG3180 54 EKKLAEEVIAVSIGPAQSQEILRTALAK-GADRGVHVEVVGAEELEPLHVAKILKKLVEKEKSDLVLLGKQAIDDDCNQT 132 (254)
T ss_pred HHHHHHEEEEEECCCCCHHHHHHHHHHC-CCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHH
T ss_conf 5400131799952762028999999862-677336873275453351279999999987535887997220025620246
Q ss_pred HHHHHHHCCCCEECCCEEE--CCCC--EEEEEEECCCEEEEEEECCCCEEEEE
Q ss_conf 7888875177410132022--4687--27974106952689997798427995
Q gi|254780369|r 104 LPRVAAMLDVMQVSEVIEI--ISPK--IFKRPSYTGNIIQTIETTDTYQIITI 152 (318)
Q Consensus 104 aprlAarL~~~~vsdvv~i--~~~~--~~~rp~fgG~~~a~v~~~~~~~viTv 152 (318)
++.+|+-|+.|..+.+..+ +++. .++|-+-||--. +. .+-|.++|-
T Consensus 133 gqmlA~lL~WPQ~t~askV~~~~~~~~~VtREIDgGlet--l~-~~lPaVitt 182 (254)
T KOG3180 133 GQMLAALLGWPQATFASKVELEGDKRVKVTREIDGGLET--LK-VKLPAVITT 182 (254)
T ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCHHH--EE-ECCCEEEEE
T ss_conf 789999857841033003798489717999870587532--12-047528974
No 39
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=96.24 E-value=0.023 Score=35.21 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=74.2
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCC---------EECCCEEEEE
Q ss_conf 0007-4564136777783356889999987639859742578867888888--95401597---------5457389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGV---------TVSPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~---------~v~P~lYia~ 266 (318)
|.+| +-|+=.|.|+...+... .+.+||+.+|+-|-.|-.. .|.+|.+ ..+|..|. .-..||-|++
T Consensus 212 L~~AkrPvIl~G~g~~~~~a~~-~l~~lae~~~~Pv~tt~~g--kg~~~~~hpl~~G~~g~~g~~~a~~~~~~aDlvl~l 288 (571)
T PRK07710 212 ISVAKKPLILAGAGVLHAKASK-ELTSFARQYEIPVVHTLLG--LGGFPADDELFLGMGGMHGSYTANMALYECDLLINI 288 (571)
T ss_pred HHHCCCCEEEECCCCCCHHHHH-HHHHHHHHHCCCEEEECCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 9718997899868846256999-9999999878999982455--787899996658877766768999997369879993
Q ss_pred EECCHHHHHHHH---CCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 616726455551---689889997665998-8310276457523899999988609
Q gi|254780369|r 267 GISGAIQHISGM---KDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G~---~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-.=..+...+. .....++-|+.||.- --+...|+++++|...+|.+|++.+
T Consensus 289 G~~~~~~~t~~~~~~~~~~~ii~Id~d~~~i~~~~~~~~~i~~d~~~~L~~L~~~~ 344 (571)
T PRK07710 289 GARFDDRLTGNLAYFAKEATVAHIDIDPAEIGKNVPTEIPIVASAKQALQVLLQQE 344 (571)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 56567654576433488763589828999968866788127458999999998735
No 40
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=96.15 E-value=0.015 Score=36.46 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=71.6
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCCE---------ECCCEEEEE
Q ss_conf 0007-45641367777833568899999876398597425788678888889--54015975---------457389999
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGVT---------VSPELYIAA 266 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~~---------v~P~lYia~ 266 (318)
|.+| +-|+=.|+|....+.. +.+++||++||+-|-.|-.. .|.+|.++ .+|.-|.. -.-||-|++
T Consensus 211 L~~AkrPvIi~G~g~~~~~a~-~~l~~lae~lg~Pv~tt~~g--kg~~~e~hpl~~G~~G~~g~~~a~~~l~~aDlvl~l 287 (588)
T CHL00099 211 IKQSSQPLLYVGGGAIISGAH-DEIKELAELFKIPVTTTLMG--KGIFDESHPLCLGMLGMHGTAYANFAVSECDLLIAL 287 (588)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHEEC
T ss_conf 971699789978863321399-99999999759987972356--877766684225877787899998776424111004
Q ss_pred EECCHHHHHHH---HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 61672645555---16898899976659988-310276457523899999988609
Q gi|254780369|r 267 GISGAIQHISG---MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G---~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=......+ ......||-||.||.-- -....|++|++|...+|.+|++.|
T Consensus 288 G~~l~~~~t~~~~~~~~~~~iI~Id~d~~~ig~~~~~~v~i~gD~~~~L~~L~~~l 343 (588)
T CHL00099 288 GARFDDRVTGKLDEFACNAQVIHIDIDPAEIGKNRIPQVAIVGDVKEVLQELLEAL 343 (588)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 88678665687433588852799618999967766788558517999999999862
No 41
>PRK07524 hypothetical protein; Provisional
Probab=96.10 E-value=0.025 Score=35.02 Aligned_cols=114 Identities=20% Similarity=0.278 Sum_probs=73.1
Q ss_pred HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC-------EECCCEEEEEE
Q ss_conf 0007--45641367777833568899999876398597425788678888889--5401597-------54573899996
Q gi|254780369|r 199 LSSA--KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV-------TVSPELYIAAG 267 (318)
Q Consensus 199 L~~A--~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~-------~v~P~lYia~G 267 (318)
|.+| .+|+.| +|..... +-+.+||++||+-|-+|-.. .|.+|+++ .+|-++- .=.+||.|++|
T Consensus 198 l~~akrPvii~G-~g~~~~~---~~l~~lae~l~~Pv~~t~~~--kg~~~~~hpl~~G~~~~~~~~~~~~~~aDlvl~lG 271 (534)
T PRK07524 198 LAAARRPLILAG-GGALAAA---AALRALAERLDAPVALTINA--KGLLPAGHPLLLGASQSLPAVRALIAEADVVLAVG 271 (534)
T ss_pred HHHCCCCEEECC-CCCCCHH---HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEEEC
T ss_conf 984659768627-5514669---99999999849771502356--76665678655576556599999997389899954
Q ss_pred ECC-----HHHHHHHHCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 167-----264555516898899976659988-310276457523899999988609
Q gi|254780369|r 268 ISG-----AIQHISGMKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 268 ISG-----a~qH~~G~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
-.= ...+..++...+.+|-|+.|++-. -+..+|+.+++|...++.+|++++
T Consensus 272 ~~l~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~l~~~l 328 (534)
T PRK07524 272 TELGETDYDVYFDGGFPLPGELIRIDIDPDQLARNYPPALALVGDARAALEALLARL 328 (534)
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHC
T ss_conf 403667765534666799872899828989967776797579707999999999844
No 42
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=96.03 E-value=0.021 Score=35.49 Aligned_cols=113 Identities=17% Similarity=0.198 Sum_probs=72.1
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCEE---------CCCEEEEEEECC
Q ss_conf 7456413677778335688999998763985974257886788888--89540159754---------573899996167
Q gi|254780369|r 202 AKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVTV---------SPELYIAAGISG 270 (318)
Q Consensus 202 A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~v---------~P~lYia~GISG 270 (318)
-.+|+.| .|....+.. +.+.+||+.||+-|-.|-.. .|.+|. ...+|.-|..- ..||-|++|.+=
T Consensus 208 rPvii~G-~g~~~~~a~-~~l~~lae~lg~PV~tt~~g--kg~~p~~hp~~~G~~G~~~~~~a~~~l~~aDlvl~lG~rl 283 (574)
T PRK06882 208 KPVLFIG-GGVITAECS-EQLTQFAQRLNLPVTSSLMG--LGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRF 283 (574)
T ss_pred CCEEEEC-CCCCCHHHH-HHHHHHHHHCCCCEEEHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 9889978-743442489-99999998609871312035--7777777765678777778889997433677399816865
Q ss_pred HHHHHHHH---CCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 26455551---6898899976659988-310276457523899999988609
Q gi|254780369|r 271 AIQHISGM---KDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 271 a~qH~~G~---~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
..+...+. .....||-||.||..- =.-..|+++++|...+|.+|++.|
T Consensus 284 ~~~~t~~~~~~~p~~kiI~id~dp~~i~~~~~~~~~i~gd~~~~l~~l~~~l 335 (574)
T PRK06882 284 DDRTTNNLAKYCPNAKVIHIDIDPTSISKNVPAAIPIVGSAKNVLEEFLSLL 335 (574)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 6544677000386673599747989974666778015436999999999976
No 43
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=95.98 E-value=0.041 Score=33.59 Aligned_cols=264 Identities=20% Similarity=0.194 Sum_probs=125.5
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHH-HHHHHHHCCCCEECCC
Q ss_conf 981892688899870789739999448101000123224557874034560441578103446-7888875177410132
Q gi|254780369|r 41 VLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDI-LPRVAAMLDVMQVSEV 119 (318)
Q Consensus 41 v~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~Vl~~~t~~Grdl-aprlAarL~~~~vsdv 119 (318)
+.|...-.+.+.+-.. +. +.+.+.|+.-+-+.++.|+++ -.+|.+++..+.+---.+ .+-..|.++...+=-.
T Consensus 23 iPG~~i~~~~dal~~~-~i-~~I~~RHEq~Aa~mAdgyar~----TGkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~i 96 (550)
T COG0028 23 IPGGSILPLYDALYDS-GI-RHILVRHEQGAAFAADGYARA----TGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAI 96 (550)
T ss_pred CCCCCHHHHHHHHHHC-CC-CEEEECCHHHHHHHHHHHHHH----HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8781278999999876-98-089867589999999999998----29987999767976888899999998719988999
Q ss_pred EE-E----CC-------CC-EEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEE--
Q ss_conf 02-2----46-------87-2797410695268999779842799516864333355666661562111024453025--
Q gi|254780369|r 120 IE-I----IS-------PK-IFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNT-- 184 (318)
Q Consensus 120 v~-i----~~-------~~-~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf~~~~~~~~~~~v~~~~~~~~~~~~~~~-- 184 (318)
+. + .+ +. .+.+|+ -|...++...+ .+-.+-..+|..+...-..+....+..+.........
T Consensus 97 tGqv~~~~~g~~afQe~D~~~l~~p~--tk~~~~v~~~~--~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~ 172 (550)
T COG0028 97 TGQVPTSLIGTDAFQEVDQVGLFRPI--TKYNFEVRSPE--DIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGP 172 (550)
T ss_pred ECCCCCCCCCCCCCHHCCHHHHHHHH--HEEEEEECCHH--HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCCC
T ss_conf 57865265677710230488875243--14789968999--999999999999852899629997285476461556555
Q ss_pred -EE-EEEEECCCCC--------CCHHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HH
Q ss_conf -88-5444314566--------6700074-5641367777833568899999876398597425788678888889--54
Q gi|254780369|r 185 -RF-IKEERTSLSP--------TDLSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QI 251 (318)
Q Consensus 185 -~~-i~~~~~~~~~--------v~L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qI 251 (318)
+. .......... --|.+|+ .|+=.|.|....+-. +.+.+||+++|+-|-+|=..- |-+|+++ ..
T Consensus 173 ~~~~~~~~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~-~~l~~lae~~~~Pv~~t~~gk--g~~p~~hp~~l 249 (550)
T COG0028 173 EPAILPPYRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGAS-EELRELAEKLGAPVVTTLMGK--GAVPEDHPLSL 249 (550)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCHH-HHHHHHHHHHCCCEEECCCCC--CCCCCCCCCCC
T ss_conf 444556768898848999999999973899789988865641349-999999998798989724557--66787687535
Q ss_pred HCCCCEE--------C-CCEEEEEEECCHHHH--HHH-HCCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 0159754--------5-738999961672645--555-168988999766599883-10276457523899999988609
Q gi|254780369|r 252 GQTGVTV--------S-PELYIAAGISGAIQH--ISG-MKDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 252 G~tG~~v--------~-P~lYia~GISGa~qH--~~G-~~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l~~~l 318 (318)
|..|..- . .||-|++|-+=---. ... ....+ ||-|+.||..-- .-..|.+|+||..++|.+|.++|
T Consensus 250 G~~g~~g~~~a~~~~~~aDlll~vG~rf~~~~~~~~~f~~~~~-ii~vDidp~ei~k~~~~~~~i~gD~~~~l~~l~~~~ 328 (550)
T COG0028 250 GMLGMHGTKAANEALEEADLLLAVGARFDDRVTGYSGFAPPAA-IIHIDIDPAEIGKNYPVDVPIVGDAKATLEALLEEL 328 (550)
T ss_pred CCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCCCCC-EEEECCCHHHHCCCCCCCCEECCCHHHHHHHHHHHH
T ss_conf 4344565088997654388999958778655543021277566-589538868838656777312067999999999976
No 44
>PRK08266 hypothetical protein; Provisional
Probab=95.86 E-value=0.023 Score=35.17 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=71.8
Q ss_pred HHHCC--EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCC---CEECCCEEEEEEECCH
Q ss_conf 00074--5641367777833568899999876398597425788678888889--540159---7545738999961672
Q gi|254780369|r 199 LSSAK--IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTG---VTVSPELYIAAGISGA 271 (318)
Q Consensus 199 L~~A~--iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG---~~v~P~lYia~GISGa 271 (318)
|.+|+ +|+. |+|.. +.. +.+.+||++||+-+-+|+.- .|.+|.++ ..|..| ..=..||.|.+|-.=.
T Consensus 199 l~~a~rPvii~-G~g~~--~a~-~~l~~lae~l~~Pv~~t~~g--kg~~~~~hpl~~g~~~~~~~l~~aDlvl~~G~~~~ 272 (531)
T PRK08266 199 IAAARNPMIFV-GGGAI--DAG-DEILELAEMLQAPVVAFRSG--RGIVSDAHPLGLTFAAAYALWPHTDVVIGIGSRME 272 (531)
T ss_pred HHHCCCCEEEE-CCHHH--HHH-HHHHHHHHHHCCCCCCCCCC--CCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCC
T ss_conf 97188977876-83175--799-99999999849982114345--77689998544676888865425889999567632
Q ss_pred HHHHH--HHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 64555--516898899976659988310276457523899999988609
Q gi|254780369|r 272 IQHIS--GMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 272 ~qH~~--G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
.+... -......+|-||.||...-.-..|.++++|...+++.|.++|
T Consensus 273 ~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~i~~d~~~~l~~L~~~l 321 (531)
T PRK08266 273 LPTFRWPWRPKGLKSIRIDIDPTEMRRLKPDVAIVADAAAGTAALLDAL 321 (531)
T ss_pred CCCCCCCCCCCCCEEEEEECCHHHHCCCCCCEEEEECHHHHHHHHHHHH
T ss_conf 2556666688898489984898996275898379845999999999986
No 45
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.77 E-value=0.023 Score=35.18 Aligned_cols=116 Identities=23% Similarity=0.213 Sum_probs=71.2
Q ss_pred HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCC---------EECCCEEEE
Q ss_conf 0007--4564136777783356889999987639859742578867888888--95401597---------545738999
Q gi|254780369|r 199 LSSA--KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGV---------TVSPELYIA 265 (318)
Q Consensus 199 L~~A--~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~---------~v~P~lYia 265 (318)
|.+| .+|+. |.|....... +.+.+||++||+-|-.|-.- .|.+|.+ ..+|.-|. .-..||-|+
T Consensus 203 L~~AkrPvIl~-G~g~~~~~a~-~~l~~lae~l~~Pv~tt~~g--kg~~p~~hp~~~G~~G~~g~~~a~~~l~~aDlvl~ 278 (574)
T PRK06466 203 LLAAKRPVIYS-GGGVILGNAS-ALLTELAHLLNLPVTNTLMG--LGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILA 278 (574)
T ss_pred HHHCCCCEEEE-CCCCCCCCHH-HHHHHHHHHHCCCCCHHHCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
T ss_conf 97179988997-8862512089-99999999868881023214--67666788643687777788999999860796543
Q ss_pred EEECCHHHHHHH---HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 961672645555---16898899976659988-310276457523899999988609
Q gi|254780369|r 266 AGISGAIQHISG---MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 266 ~GISGa~qH~~G---~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
+|-+=..+...+ ......+|-||.||.-= -.-.+|+.|+||...+|.+|++.|
T Consensus 279 lG~rl~~~~t~~~~~~~~~~~iI~Id~dp~~~~~~~~~d~~i~gd~~~~l~~l~~~l 335 (574)
T PRK06466 279 VGARFDDRVTNGPAKFCPNAKIIHIDIDPASISKTIKADIPIVGPVESVLTEMLAIL 335 (574)
T ss_pred CCCCCCCCCCCCHHHCCCCCCEEEEECCHHHHCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 476677534577312498785589708989966643578126504999999999998
No 46
>PRK08199 acetolactate synthase 2 catalytic subunit; Validated
Probab=95.72 E-value=0.18 Score=29.46 Aligned_cols=115 Identities=19% Similarity=0.199 Sum_probs=70.6
Q ss_pred HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCH--HHHHHCCCCEE---------CCCEEEE
Q ss_conf 0007--456413677778335688999998763985974257886788888--89540159754---------5738999
Q gi|254780369|r 199 LSSA--KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPN--DWQIGQTGVTV---------SPELYIA 265 (318)
Q Consensus 199 L~~A--~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~--~~qIG~tG~~v---------~P~lYia 265 (318)
|.+| .+|+.| +|+...+.. +.+.+||++||+-|..|=. ..|.+|. ....|..|..- ..|+.|+
T Consensus 195 L~~AkrPvii~G-~g~~~~~a~-~~l~~lae~lg~Pv~tt~~--gkg~~~e~hp~~~G~~g~~~~~~~~~~l~~aDlvl~ 270 (553)
T PRK08199 195 LAAAERPLVILG-GSGWTPAAV-ADLRAFAERWGLPVATAFR--RQDLFDNRHPNYAGDLGLGINPALAARIREADLVLA 270 (553)
T ss_pred HHHCCCCEEEEC-CCCCCHHHH-HHHHHHHHHHCCCEEECCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCEEEE
T ss_conf 984789889937-873554799-9999999985988895145--678888888543666764317999999984897999
Q ss_pred EEECCHHHHHHH------HCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHHC
Q ss_conf 961672645555------1689889997665998-831027645752389999998860
Q gi|254780369|r 266 AGISGAIQHISG------MKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEKN 317 (318)
Q Consensus 266 ~GISGa~qH~~G------~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~~ 317 (318)
+|-+=.-....| -...+.||-|+.||+- .-.-..|+.|++|...++.+|.+.
T Consensus 271 lG~~l~~~~t~~~~~~~~~~~~~~iI~id~d~~~l~~~~~~d~~i~~d~~~~l~~L~~~ 329 (553)
T PRK08199 271 VGTRLGEATTQGYTLLDIPVPRQTLVHVHPDAEELGRVYRPDLAIVADPAAFAAALAAL 329 (553)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 82624766678864356788875599956898996875579745851899999999705
No 47
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.62 E-value=0.043 Score=33.48 Aligned_cols=116 Identities=20% Similarity=0.174 Sum_probs=72.5
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCC---------EECCCEEEEE
Q ss_conf 00074-564136777783356889999987639859742578867888888--95401597---------5457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGV---------TVSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~---------~v~P~lYia~ 266 (318)
|.+|+ -|+=.|.|+...+.. +.+.+||+++|+-|-.|-.. .|.+|++ ..+|.-|. .-..||-|++
T Consensus 211 L~~AkrPvil~G~Gv~~~~a~-~~l~~lae~~~~PV~tt~~g--kg~~~~~hpl~~G~~G~~g~~~a~~~~~~aDlvl~i 287 (570)
T PRK06725 211 ISKAKRPLLYIGGGVIHSGGS-DELIKFARENRIPVVSTLMG--LGAYPPGDPLFLGMLGMHGTYAANMAVTECDLLLAL 287 (570)
T ss_pred HHHCCCCEEECCCCCCCCCHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 985689879836760046489-99999999869989942456--888999985557877776779999987318878740
Q ss_pred EECCHHHHHHH---HCCCCEEEEEECCCCCCH-HHCCCEEEECCHHHHHHHHHHC
Q ss_conf 61672645555---168988999766599883-1027645752389999998860
Q gi|254780369|r 267 GISGAIQHISG---MKDSKVIVSINTDENAPI-FKISDYFIVGDIFKILPEIEKN 317 (318)
Q Consensus 267 GISGa~qH~~G---~~~s~~IvAIN~D~~ApI-f~~ad~giv~D~~~vlp~l~~~ 317 (318)
|-+=.-+...+ ......+|-|+.||+.-= .-..|++++||..++|.+|++.
T Consensus 288 G~rl~~~~t~~~~~~~~~~k~i~Ididp~~~~~~~~~~~~i~gD~~~~l~~L~~~ 342 (570)
T PRK06725 288 GVRFDDRVTGKLELFSPHSKKVHIDIDPSEFHKNVTVEYPVVGDVKKALHMLLHM 342 (570)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCEECHHHHHHHHHHHC
T ss_conf 5557765678855468987389996999996687678843544499999999735
No 48
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=95.56 E-value=0.033 Score=34.18 Aligned_cols=116 Identities=25% Similarity=0.283 Sum_probs=68.0
Q ss_pred HHHCC-EEEECCCCCC-C-HHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCC--HHHHHHCCCCEE---------CCCEEE
Q ss_conf 00074-5641367777-8-33568899999876398597425788678888--889540159754---------573899
Q gi|254780369|r 199 LSSAK-IVISGGKSFG-S-MENFHKLLLPLAKKLGAAIGATRDAVDAGFAP--NDWQIGQTGVTV---------SPELYI 264 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~-~-~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p--~~~qIG~tG~~v---------~P~lYi 264 (318)
|.+|+ -|+=.|+|+. + .+.. +.+++||++||+-|-.|-.-- |-+| |...+|.-|..- .-||-|
T Consensus 208 L~~AkrPvii~G~Gv~~sg~~a~-~~l~~lae~l~~PV~tt~~gk--g~~p~~hp~~~G~~G~~g~~~a~~~l~~aDlvl 284 (594)
T PRK09107 208 LANAKRPVIYSGGGVINSGPEAS-RLLRELVELTGFPITSTLMGL--GAYPASGKNWLGMLGMHGTYEANMAMHDCDVML 284 (594)
T ss_pred HHHCCCCEEEECCCHHHHHHHHH-HHHHHHHHHHCCCCEEHHCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEE
T ss_conf 97178987980640122068999-999999997787814021026--665777766677757778889997662588699
Q ss_pred EEEECCHHHHHHH----HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 9961672645555----16898899976659988-310276457523899999988609
Q gi|254780369|r 265 AAGISGAIQHISG----MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 265 a~GISGa~qH~~G----~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
++|-+=. ++..| ......+|-||.||..- -.-..|++++||...+|.+|++.|
T Consensus 285 ~lG~rl~-~~~tg~~~~~~p~~~~I~Ididp~~i~~~~~~d~~i~gD~~~~L~~L~~~l 342 (594)
T PRK09107 285 CIGARFD-DRITGRLDAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVAHVLEDILRLW 342 (594)
T ss_pred EECCCCC-CCCCCCCCCCCCCCCCCEECCCHHHHCCCCCCCEEEECCHHHHHHHHHHHH
T ss_conf 9677567-555687022586555442248989967854678014156999999999988
No 49
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=95.44 E-value=0.042 Score=33.50 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=46.6
Q ss_pred CCCEEEEEEECCHHHHHHHH-----CCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHC
Q ss_conf 57389999616726455551-----689889997665998831027645752389999998860
Q gi|254780369|r 259 SPELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKN 317 (318)
Q Consensus 259 ~P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~ 317 (318)
+.++.|.+|-|.+++-.+++ +.-..+|-||.+|. |.-..||+-|-|+.-++||+|.++
T Consensus 177 ~aDlllvvGTSl~V~pa~~l~~~a~~~g~~vviiN~~~t-~~d~~ad~~i~g~~~evl~~l~~e 239 (239)
T PRK00481 177 EADLFIVIGTSLVVYPAAGLPHEARAHGAKTVEINLEPT-PLDSQFDLVIRGKAGEVVPELVEE 239 (239)
T ss_pred CCCEEEEECCCCEECCHHHHHHHHHHCCCEEEEECCCCC-CCCCCCCEEEECCHHHHHHHHHCC
T ss_conf 299899967885540677769999976990999829999-998733889979899999999709
No 50
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=95.33 E-value=0.045 Score=33.32 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=70.6
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC-EE-CCCEEEEEEEC----
Q ss_conf 0007-45641367777833568899999876398597425788678888889--5401597-54-57389999616----
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV-TV-SPELYIAAGIS---- 269 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~-~v-~P~lYia~GIS---- 269 (318)
|.+| +-|+-.|+|....+.. +.+.+||+++|.-|-.|-.. .|.+|.++ ..|.... .+ ..||-|++|-+
T Consensus 203 L~~AkrPvIi~G~g~~~~~a~-~~l~~lae~~~iPv~tt~~g--kg~~~~~hp~~~g~~~~~~l~~aDlvl~lG~~l~~~ 279 (554)
T TIGR03254 203 LKDAKRPLILLGKGAAYAQAD-EEIREFVEKTGIPFLPMSMA--KGLLPDTHPQSAAAARSFALAEADVVMLVGARLNWL 279 (554)
T ss_pred HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHHCCCEEEECCC--CCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 982799689968862144489-99999999729838962454--774788887435689987746587999933655522
Q ss_pred ---CHHHHHHHHCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf ---7264555516898899976659988-310276457523899999988609
Q gi|254780369|r 270 ---GAIQHISGMKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 270 ---Ga~qH~~G~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
|..+. ......+|-||.||+-- -....|.++++|+..++.+|+++|
T Consensus 280 ~~~~~~~~---~~~~~~~i~vd~d~~~~~~~~~~~~~i~~D~~~~l~~l~~~l 329 (554)
T TIGR03254 280 LSHGKGKL---WGEDAKFIQVDIEPTEMDSNRPIAAPVVGDIGSVVQALLSAA 329 (554)
T ss_pred CCCCCCCC---CCCCCEEEEECCCHHHHCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 33576655---798754999659989958776677205447999999999976
No 51
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=95.05 E-value=0.074 Score=31.97 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=69.2
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCC--HHHHHHCCCC--EECCCEEEEEEECCHHH
Q ss_conf 0007-45641367777833568899999876398597425788678888--8895401597--54573899996167264
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAP--NDWQIGQTGV--TVSPELYIAAGISGAIQ 273 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p--~~~qIG~tG~--~v~P~lYia~GISGa~q 273 (318)
|..| +-|+=.|+|....... +.+.+||++||+-|-.|-.. .|.+| |....|..+. .=..|+-|++|-+=...
T Consensus 213 L~~AkrPvIi~G~G~~~~~a~-~~l~~lae~l~iPV~tt~~g--kg~~p~~hpl~~G~~~~~~l~~aDlvl~iG~~l~~~ 289 (572)
T PRK09259 213 LKKAKRPLIILGKGAAYAQAD-EQIREFVESTGIPFLPMSMA--KGLLPDTHPQSAAAARSFALANADVVLLVGARLNWL 289 (572)
T ss_pred HHCCCCEEEEECCCCCHHHHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 972798099988781455489-99999999739976753435--676888674114689999883198899982677642
Q ss_pred HHHH----HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 5555----16898899976659988-310276457523899999988609
Q gi|254780369|r 274 HISG----MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 274 H~~G----~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
...| ......+|.||.||..- -....|.++++|+..+|.+|.+.|
T Consensus 290 ~~~g~~~~~~~~~~~I~id~d~~~i~~~~~~~~~l~~D~~~~l~~L~~~l 339 (572)
T PRK09259 290 LSHGKGKQWGADKKFIQLDIEPQEIDSNRPIAAPLVGDIGSVMQALLAAL 339 (572)
T ss_pred CCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCEEECCCHHHHHHHHHHHH
T ss_conf 24687755688864998269989967776765034055999999999986
No 52
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=94.58 E-value=0.15 Score=29.94 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=67.7
Q ss_pred HHHCC--EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH--HHHHCCCC---------EECCCEEEE
Q ss_conf 00074--564136777783356889999987639859742578867888888--95401597---------545738999
Q gi|254780369|r 199 LSSAK--IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND--WQIGQTGV---------TVSPELYIA 265 (318)
Q Consensus 199 L~~A~--iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~--~qIG~tG~---------~v~P~lYia 265 (318)
|.+|+ +|+. |+|..+ . .+.+.+||++||+-|-.|-. -.|.+|.+ ..+|--|. .=..|+.|+
T Consensus 193 l~~A~rPvil~-G~g~~~--a-~~~l~~lae~l~~PV~tt~~--gkg~~pe~hp~~~G~~G~~g~~~~~~~i~~aD~vl~ 266 (549)
T PRK06457 193 INKSKKPVLFI-GGGARG--L-GEEINKFAERIGAPIIYALN--GKGILSDLDPKVMGGIGLLGTKPSIEAMDKADLLIL 266 (549)
T ss_pred HHHCCCCEEEE-CHHHHH--H-HHHHHHHHHHHCCCEEECCC--CCCCCCCCCHHHCCCCCCCCCHHHHHHHCCCCEEEE
T ss_conf 97379989998-878878--8-99999999986978671345--677888898343467676677899985505886999
Q ss_pred EEECCHHHHHHHHCCCCEEEEEECCCCC-CHHHCCCEEEECCHHHHHHHHHH
Q ss_conf 9616726455551689889997665998-83102764575238999999886
Q gi|254780369|r 266 AGISGAIQHISGMKDSKVIVSINTDENA-PIFKISDYFIVGDIFKILPEIEK 316 (318)
Q Consensus 266 ~GISGa~qH~~G~~~s~~IvAIN~D~~A-pIf~~ad~giv~D~~~vlp~l~~ 316 (318)
+|.|=. ...-+.....+|-||.||.- --+-..|..+++|+.++|.+|..
T Consensus 267 lG~~~~--~~~~~~~~~~ii~vd~d~~~~~~~~~~~~~i~~d~~~~l~~l~~ 316 (549)
T PRK06457 267 LGTSFP--YVNFLNKDAKVIQVDNNPSNIGKRIKVDISYPCDVAEFLDNIKV 316 (549)
T ss_pred ECCCCC--CCCCCCCCCEEEEECCCHHHHCCCCCCCEEEECCHHHHHHHHHH
T ss_conf 468777--20126899728996589899677315771355229999998655
No 53
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=94.35 E-value=0.082 Score=31.69 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=41.1
Q ss_pred CCCEEEEEEECCHHHHHHHH----C-CCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHH
Q ss_conf 57389999616726455551----6-898899976659988-31027645752389999998
Q gi|254780369|r 259 SPELYIAAGISGAIQHISGM----K-DSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEI 314 (318)
Q Consensus 259 ~P~lYia~GISGa~qH~~G~----~-~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l 314 (318)
+.+|.|.+|-|.+++=-+++ + +.+.| -||.||-.. .-..+||-|.||.-|+|++|
T Consensus 175 ~~Dl~lviGTSl~V~Paa~l~~~a~~~~~~v-iIN~ept~~~~~~~~D~~i~g~~~e~~~~L 235 (235)
T cd01408 175 EADLLIVIGTSLKVAPFASLPSRVPSEVPRV-LINREPVGHLGKRPFDVALLGDCDDGVREL 235 (235)
T ss_pred CCCEEEEECCCCEECCHHHHHHHHHCCCCEE-EECCCCCCCCCCCCCCEEEECCHHHHHHHC
T ss_conf 5999999798746506767699997699899-982998998889877789968889988629
No 54
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=94.22 E-value=0.11 Score=30.94 Aligned_cols=56 Identities=23% Similarity=0.541 Sum_probs=43.0
Q ss_pred CCCEEEEEEECCHHHHHHHH-----CCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHH
Q ss_conf 57389999616726455551-----6898899976659988310276457523899999988
Q gi|254780369|r 259 SPELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIE 315 (318)
Q Consensus 259 ~P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~ 315 (318)
+.++.|.+|-|.+++--..+ +.-..||-||.+| -|.=+.||+-|-|+.-|+||+|+
T Consensus 164 ~aDlllvvGTSl~V~pa~~l~~~a~~~g~~viiIN~~~-T~~d~~ad~~i~g~~~evLp~L~ 224 (224)
T cd01412 164 KADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEP-TPLSPIADFAFRGKAGEVLPALL 224 (224)
T ss_pred HCCEEEEECCCCEEHHHHHHHHHHHHCCCCEEEECCCC-CCCCCCCCEEEECCHHHHHHHHC
T ss_conf 19979998988555677789999997699499988999-99976358899888999999669
No 55
>PRK08273 pyruvate decarboxylase; Provisional
Probab=94.18 E-value=0.18 Score=29.58 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=65.3
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC---E------ECCCEEEEE
Q ss_conf 00074-5641367777833568899999876398597425788678888889--5401597---5------457389999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV---T------VSPELYIAA 266 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~---~------v~P~lYia~ 266 (318)
|.+|+ .++=.|.|..+.. +-+.+||++||+-|-.|-. -.|.+|.++ ..|..|. . =.-|+-|++
T Consensus 205 L~~a~rPvIl~G~Ga~~A~---~el~~lAe~l~aPV~tt~~--gkg~ip~dhPl~~G~~G~~g~~~~~~~~~~aDllL~i 279 (597)
T PRK08273 205 LNAGRKVAILVGAGALGAT---DEVIAVAERLGAGVAKALL--GKAALPDDLPWVTGSIGLLGTKPSYELMTECDTLLMV 279 (597)
T ss_pred HHCCCCCEEEECHHHHHHH---HHHHHHHHHHCCCEEEECC--CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 9638998899687787589---9999999985986577002--4665556785345767566749999998558859999
Q ss_pred EECCHHHHHHHHCCCCEEEEEECCCCCCHHH--CCCEEEECCHHHHHHHHHHCC
Q ss_conf 6167264555516898899976659988310--276457523899999988609
Q gi|254780369|r 267 GISGAIQHISGMKDSKVIVSINTDENAPIFK--ISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 267 GISGa~qH~~G~~~s~~IvAIN~D~~ApIf~--~ad~giv~D~~~vlp~l~~~l 318 (318)
|-+=.......-.+...+|-|+.||+- |-. ..|++|+||..++|.+|++.|
T Consensus 280 Gt~~~~~~~~p~~~~a~~IqIDid~~~-ig~~~p~~v~i~gD~~~~L~~L~~~l 332 (597)
T PRK08273 280 GSSFPYSEFLPKEGQARGVQIDLDGRM-LGLRYPMEVNLVGDAAETLRALLPLL 332 (597)
T ss_pred ECCCCCCCCCCCCCCCEEEEECCCHHH-HCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 478982013577788549997289899-66767887038637999999999864
No 56
>PRK05858 hypothetical protein; Provisional
Probab=93.96 E-value=0.13 Score=30.44 Aligned_cols=117 Identities=19% Similarity=0.183 Sum_probs=70.5
Q ss_pred HHHC-CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHH--HHCCC--CEECCCEEEEEEECCHHH
Q ss_conf 0007-456413677778335688999998763985974257886788888895--40159--754573899996167264
Q gi|254780369|r 199 LSSA-KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQ--IGQTG--VTVSPELYIAAGISGAIQ 273 (318)
Q Consensus 199 L~~A-~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~q--IG~tG--~~v~P~lYia~GISGa~q 273 (318)
|.+| +-|+=.|+|+...+.. +.+.+||++||+-|-.|... .|.+|.++= .|... ..-..++-|++|-.=..+
T Consensus 202 L~~AkrPvii~G~gv~~~~a~-~~l~~lae~lg~Pv~tt~~g--kg~~p~~hpl~~~~~~~~~l~~aDlil~iG~~l~~~ 278 (543)
T PRK05858 202 LSTAQRPVIMAGTNVWWGHAE-AALLRLAEELHIPVLMNGMA--RGVVPADHPLAFSRARSKALGEADVALVVGVPMDFR 278 (543)
T ss_pred HHHCCCCEEEECCCCCCCCHH-HHHHHHHHHHCCCEEECCCC--CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCEE
T ss_conf 982799789968642233339-99999999869977875555--776888770456578998855699899965765411
Q ss_pred HHHH--HCCCCEEEEEECCCCCC-HHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 5555--16898899976659988-310276457523899999988609
Q gi|254780369|r 274 HISG--MKDSKVIVSINTDENAP-IFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 274 H~~G--~~~s~~IvAIN~D~~Ap-If~~ad~giv~D~~~vlp~l~~~l 318 (318)
--.| ......+|-|+.|+..- -....+.++++|+.+++.+|.+.+
T Consensus 279 ~~~~~~~~~~~~~i~vd~~~~~~~~~~~~~~~l~~d~~~~l~~L~~~~ 326 (543)
T PRK05858 279 LGFGGVFGSTTQLVVVDRAPPQRAHPRPVAAGLYGDLSAILSALAGSG 326 (543)
T ss_pred CCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCEECCHHHHHHHHHHCC
T ss_conf 156543588764999617889966876886021068999999997414
No 57
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=92.15 E-value=0.4 Score=27.33 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=47.8
Q ss_pred CCCEEEEEEECCHHHHHHHH-----CCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 57389999616726455551-----6898899976659988310276457523899999988609
Q gi|254780369|r 259 SPELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 259 ~P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
+-+|.|.+|-|+.++=-++. +.-..||-||..| -|.=..||+-|-++.-++||+|.++|
T Consensus 214 ~aDlllviGTSl~V~PA~~l~~~a~~~g~~vviiN~~~-T~~D~~ad~~i~~~~~~vL~~l~~~L 277 (285)
T PRK05333 214 AADAVLVVGSSLMVYSGYRFCVWAARQGKPIAALNLGR-TRADPLLTLKVEASCAQALAALVARL 277 (285)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCC-CCCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf 29999997878422521368999997799299989989-99985353999188999999999981
No 58
>PRK07064 hypothetical protein; Provisional
Probab=90.59 E-value=1.4 Score=23.78 Aligned_cols=113 Identities=18% Similarity=0.259 Sum_probs=65.2
Q ss_pred HHHC--CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH--HHHCCCC-------EECCCEEEEEE
Q ss_conf 0007--45641367777833568899999876398597425788678888889--5401597-------54573899996
Q gi|254780369|r 199 LSSA--KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW--QIGQTGV-------TVSPELYIAAG 267 (318)
Q Consensus 199 L~~A--~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~--qIG~tG~-------~v~P~lYia~G 267 (318)
|.+| .+|+.| +|..... +.+++||+ ||.-+-.|-.. .|.+|.++ .+|.-|- .=..|+-|++|
T Consensus 200 L~~AkrPvIi~G-~g~~~a~---~~l~~lae-l~iPv~tt~~g--kg~i~e~hpl~~G~~~~~~~~~~~l~~aDlvl~iG 272 (544)
T PRK07064 200 LAGARRPLLWLG-GGARHAR---AEVERLVD-LGFGVVTSTQG--RGVLPEDHPASLGAFNNSAAVEALYKTCDLLLVVG 272 (544)
T ss_pred HHHCCCCEEEEC-HHHHHHH---HHHHHHHH-CCCCEEECCCC--CCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEC
T ss_conf 871789789977-4255558---99999987-59969972122--76665666555676567599999984178799962
Q ss_pred ECCHHHHHH--HHCCCCEEEEEECCCCCCHHH-CCCEEEECCHHHHHHHHHHCC
Q ss_conf 167264555--516898899976659988310-276457523899999988609
Q gi|254780369|r 268 ISGAIQHIS--GMKDSKVIVSINTDENAPIFK-ISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 268 ISGa~qH~~--G~~~s~~IvAIN~D~~ApIf~-~ad~giv~D~~~vlp~l~~~l 318 (318)
-+=...... ...-.+.++-|+.||+..-.. .+|++|++|...+|.+|.+.|
T Consensus 273 ~~l~~~~t~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 326 (544)
T PRK07064 273 SRLRGNETLKYKLALPRPLIRVDADAAADGRGYRNDLFVHGDAARVLARLADRL 326 (544)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 534667676644468985799718879958765787158607999999999862
No 59
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=85.92 E-value=1.8 Score=23.22 Aligned_cols=113 Identities=14% Similarity=0.112 Sum_probs=62.3
Q ss_pred HHHCC-EEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHH------HHHHCCCCE------ECCCEEEE
Q ss_conf 00074-564136777783356889999987639859742578867888888------954015975------45738999
Q gi|254780369|r 199 LSSAK-IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPND------WQIGQTGVT------VSPELYIA 265 (318)
Q Consensus 199 L~~A~-iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~------~qIG~tG~~------v~P~lYia 265 (318)
|.+|+ -|+-.|.|+...+-. +.+++||++||+-|-.|-..- |.+|.+ ..+|..|.. =..||-|+
T Consensus 198 l~~A~rPvi~~G~Gv~~~~a~-~~l~~lae~l~~PV~tt~~gk--G~i~~~~~~~~G~~~G~~g~~~~~~~l~~aDlvl~ 274 (535)
T TIGR03394 198 MRSATSPVMMVCVEVRRYGLE-AKVAELAQRLGVPVVTTFMGR--GLLADAPTPPLGTYLGVAGDAELSRLVEESDGLLL 274 (535)
T ss_pred HHHCCCCEEEEECCCCCCCHH-HHHHHHHHHHCCCCCCCCCCC--CCCCCCCCHHHHHHCCCCCCHHHHHHHCCCCEEEE
T ss_conf 985568829983140024579-999999997288844264556--46899984133000555578999987507999999
Q ss_pred EEECCHHHHHH----HHCCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHH
Q ss_conf 96167264555----51689889997665998831027645752389999998
Q gi|254780369|r 266 AGISGAIQHIS----GMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEI 314 (318)
Q Consensus 266 ~GISGa~qH~~----G~~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l 314 (318)
+|.+=.-.+.. -+...+.|...+...+-...-.+|..+.++...++..+
T Consensus 275 lG~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~d~~l~~~~~~l~~~~ 327 (535)
T TIGR03394 275 LGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLGYHVYADIPLAGLVDALLALL 327 (535)
T ss_pred ECCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 36777766657644448857679954875541874348865899999999986
No 60
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=80.91 E-value=1.1 Score=24.46 Aligned_cols=59 Identities=27% Similarity=0.385 Sum_probs=44.1
Q ss_pred CCCEEEEEEECCHHHHHHHHC-----CCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 573899996167264555516-----898899976659988310276457523899999988609
Q gi|254780369|r 259 SPELYIAAGISGAIQHISGMK-----DSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 259 ~P~lYia~GISGa~qH~~G~~-----~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l 318 (318)
..++.|.+|-||.++=.+++. .-..++-||. +.-++-..+|+-+.++.-+++|.|.+++
T Consensus 182 ~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~-~~~~~~~~~d~~i~~~a~~~~~~l~~~~ 245 (250)
T COG0846 182 EADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINL-EPTRLDPIADEVIRGDAGEVLPLLLEEL 245 (250)
T ss_pred CCCEEEEECCCEEECCHHHHHHHHHHCCCEEEEECC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 699999978641886743506999866987999899-8666751447998855999999999976
No 61
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=80.28 E-value=4.1 Score=20.84 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=18.7
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 456413677778335688999998763
Q gi|254780369|r 203 KIVISGGKSFGSMENFHKLLLPLAKKL 229 (318)
Q Consensus 203 ~iVVsgGRGi~~~enf~~l~~~LA~~L 229 (318)
++..-.|.|+.+.|.=.+|++..||.+
T Consensus 195 e~~L~vGGGIRs~E~A~~~a~AgAD~~ 221 (242)
T TIGR01768 195 EVKLIVGGGIRSVEKARKLAEAGADVV 221 (242)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 325784076478899999953459899
No 62
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=77.51 E-value=5.7 Score=19.96 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=10.9
Q ss_pred HHHCCEEEECCCCCCCHHHH
Q ss_conf 00074564136777783356
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENF 218 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf 218 (318)
|++..++|+ .|+.++|.-
T Consensus 183 l~~~~LivG--GGIrs~e~a 200 (229)
T PRK04169 183 LTDTPLIVG--GGIRSPEQA 200 (229)
T ss_pred CCCCCEEEE--CCCCCHHHH
T ss_conf 789878992--896999999
No 63
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=75.95 E-value=6.4 Score=19.64 Aligned_cols=97 Identities=16% Similarity=0.165 Sum_probs=59.7
Q ss_pred EEEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEE--CCC------------HHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 0023489999802975878999999999873893479998--189------------26888998707897399994481
Q gi|254780369|r 3 YCDMPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVL--GDN------------IENIAQQAARIQGVTQVIVAQST 68 (318)
Q Consensus 3 ~~~M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~--G~~------------~~~~a~~~~~~~Gad~V~~~~~~ 68 (318)
.+.|++|++.-|.|.+--...- .|..-..=|.+|.++++ |+. -...+.++++..|+++++.++.+
T Consensus 8 ~~~~~vL~v~aHPDDe~~g~gg-tla~~~~~G~~V~v~~lT~Ge~g~~~~~~~l~~~R~~E~~~a~~~LGv~~~~~l~~~ 86 (237)
T COG2120 8 LDPLRVLVVFAHPDDEEIGCGG-TLAKLAARGVEVTVVCLTLGEAGENGGELELGAVRRAEARAAARVLGVRETIFLGFP 86 (237)
T ss_pred CCCCCEEEEECCCCCHHHCCHH-HHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 6786579994389824543499-999999779879999943776777677531189999999999997499863877788
Q ss_pred -HHHHHHHHHHHHHHHHHCC--CCCEEECCCCCHH
Q ss_conf -0100012322455787403--4560441578103
Q gi|254780369|r 69 -IFRHKLAGPVSDFVVSIAR--DYKTIMASANAMG 100 (318)
Q Consensus 69 -~~~~~~~~~~a~~l~~~~~--~~~~Vl~~~t~~G 100 (318)
.+..+..+.....|.+++. +|+.|+.+....+
T Consensus 87 ~~~~~~~~~~~~~~L~~ii~~~~P~~V~t~~~~d~ 121 (237)
T COG2120 87 DTGADADPEEITGALVAIIRRLRPDVVFTPYPDDG 121 (237)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 74453697999999999998539977998258888
No 64
>KOG1185 consensus
Probab=70.61 E-value=3.5 Score=21.29 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=31.6
Q ss_pred CCCCEEEEEECCCCCCH--HHCCCEEEECCHHHHHHHHHHCC
Q ss_conf 68988999766599883--10276457523899999988609
Q gi|254780369|r 279 KDSKVIVSINTDENAPI--FKISDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 279 ~~s~~IvAIN~D~~ApI--f~~ad~giv~D~~~vlp~l~~~l 318 (318)
+++| +|.||.+|+-== |-.+|.+|.||+..++-+|.|+|
T Consensus 301 kd~K-fIqvd~n~Eel~~n~~k~~v~i~gDig~~~~~L~e~l 341 (571)
T KOG1185 301 KDVK-FIQVDINPEELGNNFVKPDVAIQGDIGLFVLQLVEEL 341 (571)
T ss_pred CCCE-EEEEECCHHHHHCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 7763-9998679899733567877415642788999999986
No 65
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=68.69 E-value=4.7 Score=20.52 Aligned_cols=46 Identities=15% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCC-CEEEEECCCHHH
Q ss_conf 99999987389347999818926888998707897-399994481010
Q gi|254780369|r 25 RIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGV-TQVIVAQSTIFR 71 (318)
Q Consensus 25 Ell~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Ga-d~V~~~~~~~~~ 71 (318)
-.+.+|+.. ..|.++=+-...=+.+..=++.||+ |+|..+..+-++
T Consensus 14 n~I~fA~~~-~~Vi~vDi~~~~l~~A~~NA~iyGV~drI~fi~gD~f~ 60 (165)
T pfam09445 14 NTIQFANVF-CSVIGIDINPEHLACAQHNAEVYGVSDRIWFILGDWFE 60 (165)
T ss_pred HHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHH
T ss_conf 999999758-98999979899999999989983987317999775999
No 66
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=65.93 E-value=3.7 Score=21.13 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=45.8
Q ss_pred HHHHHHCC-CCCEEECCCCCHHHHHHHH----HHHHCCCCEEC-CCEEECCCC------EEEEEEECCCEEE
Q ss_conf 55787403-4560441578103446788----88751774101-320224687------2797410695268
Q gi|254780369|r 80 DFVVSIAR-DYKTIMASANAMGKDILPR----VAAMLDVMQVS-EVIEIISPK------IFKRPSYTGNIIQ 139 (318)
Q Consensus 80 ~~l~~~~~-~~~~Vl~~~t~~Grdlapr----lAarL~~~~vs-dvv~i~~~~------~~~rp~fgG~~~a 139 (318)
..+.+++. +.++.|++-|=+|||+.+| +|-|-+-++|+ ||-.|.+.+ .+++-+|+|-+-.
T Consensus 156 ~tIekvA~sd~TvllLGESGTGKEV~ArA~H~~S~R~~~~FVAINCAAIPEnLLEsELFGyEKGAFTGA~k~ 227 (451)
T TIGR02915 156 RTIEKVAPSDITVLLLGESGTGKEVLARALHELSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQ 227 (451)
T ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHCCCCHHHHHHHCC
T ss_conf 886521200001301046671178999898420578977734441674575246677603410124220034
No 67
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=65.48 E-value=11 Score=18.18 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=10.6
Q ss_pred HHHCCEEEECCCCCCCHHHH
Q ss_conf 00074564136777783356
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENF 218 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf 218 (318)
+.+..++|+| |+.++|.-
T Consensus 180 ~~~~~LivGG--GIrs~e~A 197 (231)
T pfam01884 180 LDDARLIVGG--GIKSGEKA 197 (231)
T ss_pred CCCCCEEEEC--CCCCHHHH
T ss_conf 6897689969--97999999
No 68
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=64.80 E-value=11 Score=18.10 Aligned_cols=98 Identities=19% Similarity=0.216 Sum_probs=61.2
Q ss_pred HHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEE-EHHHHHCCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHH--
Q ss_conf 0007456413677778335688999998763985974-2578867888888954015975457389999616726455--
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGA-TRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHI-- 275 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~-SRp~vD~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~-- 275 (318)
|.+|+.|.--|+|. +. .+.+.++..|.- +|- +...-|.+. |.-.....=+-++-|++-.||-...+
T Consensus 10 i~~a~~I~i~G~G~----S~-~~A~~~~~~l~~-~g~~~~~~~~~~~-----~~~~~~~~~~~d~~i~iS~sg~~~~~~~ 78 (139)
T cd05013 10 LAKARRIYIFGVGS----SG-LVAEYLAYKLLR-LGKPVVLLSDPHL-----QLMSAANLTPGDVVIAISFSGETKETVE 78 (139)
T ss_pred HHCCCEEEEEECCH----HH-HHHHHHHHHHCC-CCCEEEECCCHHH-----HHHHHHCCCCCCEEEEECCCCCCHHHHH
T ss_conf 97599289998081----59-999999999725-8982798796277-----8888745999999999768636378999
Q ss_pred -HHH---CCCCEEEEEECCCCCCHHHCCCEEEECCHH
Q ss_conf -551---689889997665998831027645752389
Q gi|254780369|r 276 -SGM---KDSKVIVSINTDENAPIFKISDYFIVGDIF 308 (318)
Q Consensus 276 -~G~---~~s~~IvAIN~D~~ApIf~~ad~giv~D~~ 308 (318)
+-. +++ .||+|-..++.|+-++||+-+.-...
T Consensus 79 ~~~~ak~~g~-~ii~IT~~~~s~l~~~ad~~l~~~~~ 114 (139)
T cd05013 79 AAEIAKERGA-KVIAITDSANSPLAKLADIVLLVSSE 114 (139)
T ss_pred HHHHHHHCCC-EEEEEECCCCCHHHHHCCEEEECCCC
T ss_conf 9999998699-79999799999779969999982886
No 69
>PRK00211 hypothetical protein; Validated
Probab=64.26 E-value=11 Score=18.03 Aligned_cols=67 Identities=10% Similarity=0.185 Sum_probs=43.7
Q ss_pred EE-EEEEEEE--CCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHH----------------HHHHCCCCCCEEEEEC
Q ss_conf 34-8999980--297587899999999987389347999818926888----------------9987078973999944
Q gi|254780369|r 6 MP-VLLLADY--NQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIA----------------QQAARIQGVTQVIVAQ 66 (318)
Q Consensus 6 M~-ilV~~E~--~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a----------------~~~~~~~Gad~V~~~~ 66 (318)
|| ++++.-+ .++...+..|+++=++..+..++.++.+|+++-.+. -.++..|+++++|++.
T Consensus 1 Mkkl~~i~~~aP~g~~~~rEgLD~~La~aaf~q~vsl~F~~DGV~qL~~~Q~p~~i~~k~~~~~~~~L~lYdie~vyvc~ 80 (119)
T PRK00211 1 MKRLAFVFRQAPHGGASGREGLDALLATSAFTEDIGVFFIDDGVFQLLPGQQPDAILQRDYIATFKLLPLYDIEQCYICA 80 (119)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEH
T ss_conf 96699995679988768999999999998707973799956459886768998635564689998533537963688879
Q ss_pred CCHHHH
Q ss_conf 810100
Q gi|254780369|r 67 STIFRH 72 (318)
Q Consensus 67 ~~~~~~ 72 (318)
.+.-++
T Consensus 81 ~SL~~r 86 (119)
T PRK00211 81 ASLRER 86 (119)
T ss_pred HHHHHC
T ss_conf 999984
No 70
>pfam07071 DUF1341 Protein of unknown function (DUF1341). This family consists of several hypothetical bacterial proteins of around 220 residues in length. The function of this family is unknown.
Probab=57.62 E-value=8.7 Score=18.81 Aligned_cols=31 Identities=3% Similarity=0.189 Sum_probs=23.3
Q ss_pred CEEECCCCCHHHHHHHHHHHHCCCCEECCCE
Q ss_conf 6044157810344678888751774101320
Q gi|254780369|r 90 KTIMASANAMGKDILPRVAAMLDVMQVSEVI 120 (318)
Q Consensus 90 ~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv 120 (318)
++=|-+.+++-.....++|.+.+-..+..+.
T Consensus 59 SVGLGaGDp~Q~~~Va~Ia~~~~P~HVNQvF 89 (218)
T pfam07071 59 SVGLGAGDPNQSAMVADISRHVQPQHINQVF 89 (218)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8842899979999999999874976546415
No 71
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; InterPro: IPR001095 This entry contains the alpha subunit the acetyl coenzyme A carboxylase complex (). It catalyzes the first step in the synthesis of long-chain fatty acids which involves the carboxylation of acetyl-CoA to malonyl-CoA. The acetyl-CoA carboxylase complex () is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and two non-identical carboxyl transferase subunits (alpha and beta) in a 2:2 association . The reaction involves two steps: Biotin carrier protein + ATP + HCO_3^- -> Carboxybiotin carrier protein + ADP + P_i Carboxybiotin carrier protein + Acetyl-CoA -> Malonyl-CoA + Biotin carrier protein ; GO: 0003989 acetyl-CoA carboxylase activity, 0006633 fatty acid biosynthetic process, 0009317 acetyl-CoA carboxylase complex.
Probab=57.48 E-value=3.8 Score=21.09 Aligned_cols=75 Identities=11% Similarity=0.155 Sum_probs=35.2
Q ss_pred EEEEEEEEEEECCCEECHHHH------HHHHHH----HHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 023489999802975878999------999999----8738934799981892688899870789739999448101000
Q gi|254780369|r 4 CDMPVLLLADYNQENLSEQTA------RIVTAA----QKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHK 73 (318)
Q Consensus 4 ~~M~ilV~~E~~~g~l~~~sl------Ell~~A----~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~ 73 (318)
|||.|+.|+|+.+- ..-... |+|..= .+|.-+|-.+|+|++...-|= +++. .|+|.-.+.+.|.=-
T Consensus 158 F~~PIi~fiDT~GA-YPGigAEerGQsEAIA~NL~Ema~L~VPvic~vIGEGGSGGAL-aiGV--GDkv~MLeyS~YSVi 233 (329)
T TIGR00513 158 FNLPIITFIDTPGA-YPGIGAEERGQSEAIAKNLREMARLKVPVICTVIGEGGSGGAL-AIGV--GDKVNMLEYSTYSVI 233 (329)
T ss_pred CCCCEEEEECCCCC-CCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHH-HHHH--HHHHHHHHHHHHCCC
T ss_conf 17985886538888-7562044505278999998997109988799985268614789-9989--889988762022000
Q ss_pred HHHHHHHHH
Q ss_conf 123224557
Q gi|254780369|r 74 LAGPVSDFV 82 (318)
Q Consensus 74 ~~~~~a~~l 82 (318)
.||..+..|
T Consensus 234 SPEGCAaiL 242 (329)
T TIGR00513 234 SPEGCAAIL 242 (329)
T ss_pred CHHHHHHHC
T ss_conf 878899860
No 72
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type; InterPro: IPR012846 Two groups of proteins form acetolactate from two molecules of pyruvate. The type of acetolactate synthase described in this entry also catalyzes the formation of acetohydroxybutyrate from pyruvate and 2-oxobutyrate, an early step in the branched chain amino acid biosynthesis; it is therefore also termed acetohydroxyacid synthase. In bacteria, this catalytic chain is associated with a smaller regulatory chain in an alpha2/beta2 heterotetramer. Acetolactate synthase is a thiamine pyrophosphate enzyme. In this type, FAD and Mg++ are also found. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.; GO: 0000287 magnesium ion binding, 0003984 acetolactate synthase activity, 0030976 thiamin pyrophosphate binding, 0050660 FAD binding, 0009082 branched chain family amino acid biosynthetic process.
Probab=56.77 E-value=5.9 Score=19.85 Aligned_cols=246 Identities=18% Similarity=0.198 Sum_probs=126.4
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHH-HHCCCCEECCC-----EEECCC--------CEE
Q ss_conf 9944810100012322455787403456044157810344678888-75177410132-----022468--------727
Q gi|254780369|r 63 IVAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVA-AMLDVMQVSEV-----IEIISP--------KIF 128 (318)
Q Consensus 63 ~~~~~~~~~~~~~~~~a~~l~~~~~~~~~Vl~~~t~~GrdlaprlA-arL~~~~vsdv-----v~i~~~--------~~~ 128 (318)
+..+|+.-+-..+|-||++ --++.++|.-|.+=--.+.--+| |-+|+-.+==. +++.+. .-+
T Consensus 46 IL~RHEQgA~HaADGYARA----sGkvGVv~~TSGPGATN~VTGiAtAy~DS~P~Vv~tGQV~t~~IG~DAFQE~D~~GI 121 (593)
T TIGR00118 46 ILVRHEQGAVHAADGYARA----SGKVGVVLATSGPGATNLVTGIATAYMDSVPLVVFTGQVPTSLIGSDAFQEADILGI 121 (593)
T ss_pred ECCCHHHHHHHHHCCCEEC----CCCEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCCHHHHHCCC
T ss_conf 2167255764542344001----583028986079872335656777542576537751760001013750000011134
Q ss_pred EEEEECCCEEEEEE--------------ECCCC-EEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEEE----
Q ss_conf 97410695268999--------------77984-279951686433335566666156211102445302588544----
Q gi|254780369|r 129 KRPSYTGNIIQTIE--------------TTDTY-QIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTRFIKE---- 189 (318)
Q Consensus 129 ~rp~fgG~~~a~v~--------------~~~~~-~viTvr~~sf~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~---- 189 (318)
+||+===+.+-+-. ++.+| .|+-=-|+-....+.........+++++-..+...- .-..
T Consensus 122 t~PitKHsf~V~~~edlp~~~~~AF~IA~TGRPGPVlvDlPKDv~~~~~~~~~~~P~~v~LPgY~P~~~G--h~~Qdefv 199 (593)
T TIGR00118 122 TMPITKHSFQVKSAEDLPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEFPYDDPEKVNLPGYKPTVEG--HPLQDEFV 199 (593)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHCCCCCCCCEEECCCCCCCCCC--CCCHHHHH
T ss_conf 6665675300258789999999877643276668827858842243333267888860007887888898--83145789
Q ss_pred ---EECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH-----HHHCCCCEE---
Q ss_conf ---431456667000745641367777833568899999876398597425788678888889-----540159754---
Q gi|254780369|r 190 ---ERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW-----QIGQTGVTV--- 258 (318)
Q Consensus 190 ---~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~-----qIG~tG~~v--- 258 (318)
.++.-+.+..++=+||-+||.=|.-.+- ++.+++||+.+..=|-+|= -=.|=.|.+| +.|-=|...
T Consensus 200 ~qsI~kA~~li~~AkkPVilvGGGvin~a~a-s~~L~elae~~~~PV~tTL--mGlG~FP~~Hp~~LGMlGMHGt~~AN~ 276 (593)
T TIGR00118 200 MQSIKKAAELIEKAKKPVILVGGGVINIAGA-SEELKELAERLQIPVTTTL--MGLGSFPEDHPLSLGMLGMHGTKTANL 276 (593)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCHHHHCCCC-HHHHHHHHHHCCCCCEECC--CCCCCCCCCCHHHHCCCCCHHHHHHHH
T ss_conf 9999999999997269779864135420554-0799999854077600101--567887846835503567657888732
Q ss_pred ---CCCEEEEEEEC------CHHHHHHHH------CCCCEEEEEECCCCCCHHHC--CCEEEECCHHHHHHHHHHCC
Q ss_conf ---57389999616------726455551------68988999766599883102--76457523899999988609
Q gi|254780369|r 259 ---SPELYIAAGIS------GAIQHISGM------KDSKVIVSINTDENAPIFKI--SDYFIVGDIFKILPEIEKNL 318 (318)
Q Consensus 259 ---~P~lYia~GIS------Ga~qH~~G~------~~s~~IvAIN~D~~ApIf~~--ad~giv~D~~~vlp~l~~~l 318 (318)
.-||-||+|.- |-+.|-+== .+-.-||=|.-|| |.|=|. +|..||||.+.||-+|+++|
T Consensus 277 Av~EcDllIAvG~RFdDRvTGnl~~FAp~AkraaaeGrGGiiHiDIDP-aeIgK~v~~diPiVGDAr~VL~~ll~~~ 352 (593)
T TIGR00118 277 AVHECDLLIAVGARFDDRVTGNLAKFAPNAKRAAAEGRGGIIHIDIDP-AEIGKNVRVDIPIVGDARNVLEELLKKL 352 (593)
T ss_pred HHHHCCEEEEEEEEECCCCCCCHHHHCHHHHHHHHCCCCCEEEEEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 542053214530000566348776723165675414787369998537-6557711464010367589999999998
No 73
>PRK10494 hypothetical protein; Provisional
Probab=53.74 E-value=15 Score=17.27 Aligned_cols=11 Identities=36% Similarity=0.706 Sum_probs=4.3
Q ss_pred CCEEEECCCCC
Q ss_conf 74564136777
Q gi|254780369|r 202 AKIVISGGKSF 212 (318)
Q Consensus 202 A~iVVsgGRGi 212 (318)
+++|+|||+|-
T Consensus 122 ~~li~SGG~~~ 132 (259)
T PRK10494 122 AKLIFTGGVAK 132 (259)
T ss_pred CEEEEECCCCC
T ss_conf 83999688788
No 74
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=53.64 E-value=17 Score=16.89 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH--HCCCCC
Q ss_conf 100012322455787--403456
Q gi|254780369|r 70 FRHKLAGPVSDFVVS--IARDYK 90 (318)
Q Consensus 70 ~~~~~~~~~a~~l~~--~~~~~~ 90 (318)
|....|+.|.+++-- +++++.
T Consensus 76 fGm~~PeGYRKA~Rlm~lAekf~ 98 (256)
T PRK12319 76 FGQPHPEGYRKALRLMKQAEKFG 98 (256)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99998179999999999999809
No 75
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=50.64 E-value=17 Score=16.91 Aligned_cols=49 Identities=14% Similarity=0.251 Sum_probs=34.3
Q ss_pred ECCCEEEEEEECCHHHHHHH----HCCCCEEEEEECCCCCCHHHCCCEEEECCH
Q ss_conf 45738999961672645555----168988999766599883102764575238
Q gi|254780369|r 258 VSPELYIAAGISGAIQHISG----MKDSKVIVSINTDENAPIFKISDYFIVGDI 307 (318)
Q Consensus 258 v~P~lYia~GISGa~qH~~G----~~~s~~IvAIN~D~~ApIf~~ad~giv~D~ 307 (318)
-+.+|.|.+|-|++++=.++ .+....+|-||.+|- |.=..||+-|-++.
T Consensus 170 ~~aDlllviGTSl~V~Pa~~l~~~~~~g~~~i~IN~~~T-~~D~~adlvI~~~~ 222 (225)
T cd01411 170 EKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPT-QLDSPATLVIKDAV 222 (225)
T ss_pred HCCCEEEEECCCCEEHHHHHHHHHHHCCCCEEEECCCCC-CCCCCCCEEEECCC
T ss_conf 649999997948486416679999878995999899999-99865338982321
No 76
>pfam02585 PIG-L GlcNAc-PI de-N-acetylase. Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyses the second step in GPI biosynthesis.
Probab=50.06 E-value=20 Score=16.53 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=46.9
Q ss_pred EEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCH-------------HHHHHHHHCCCCCCEEEEECCC--HHHHH
Q ss_conf 99998029758789999999998738934799981892-------------6888998707897399994481--01000
Q gi|254780369|r 9 LLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNI-------------ENIAQQAARIQGVTQVIVAQST--IFRHK 73 (318)
Q Consensus 9 lV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~-------------~~~a~~~~~~~Gad~V~~~~~~--~~~~~ 73 (318)
|+++-|.+.+.- ..--++....+-|.++.++++..+. .....++.+..|+++++..+-+ .+..+
T Consensus 1 Lvi~aHpDDe~l-g~Ggti~~~~~~g~~v~vv~~t~g~~~~~~~~~~~~~R~~E~~~a~~~lG~~~~~~l~~~d~~~~~~ 79 (111)
T pfam02585 1 LVIAAHPDDEEL-GAGGTIAKLAEQGHEVHVVTLTDGEAGGLSPEELGAIRRREARAAAAILGVERVIFLDFPDGGLDEW 79 (111)
T ss_pred CEEEECCCCHHH-HHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHH
T ss_conf 975778880888-7999999999769987999956887677773789999999999999980998258999999751335
Q ss_pred HHHHHHHHHHHHCC--CCCEEECCCCC
Q ss_conf 12322455787403--45604415781
Q gi|254780369|r 74 LAGPVSDFVVSIAR--DYKTIMASANA 98 (318)
Q Consensus 74 ~~~~~a~~l~~~~~--~~~~Vl~~~t~ 98 (318)
.-+.+.+.+.++++ +|++|+.++..
T Consensus 80 ~~~~~~~~i~~~i~~~kPd~V~t~~~~ 106 (111)
T pfam02585 80 DLEELLAALARLIREIRPDVVLTPDPA 106 (111)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 799999999999998599799978998
No 77
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=49.36 E-value=20 Score=16.46 Aligned_cols=52 Identities=10% Similarity=0.033 Sum_probs=40.3
Q ss_pred CCCEEEEEEECCHHHHHHHH-----CCCCEEEEEECCCCCCHHHCCCEEEECCHHHHH
Q ss_conf 57389999616726455551-----689889997665998831027645752389999
Q gi|254780369|r 259 SPELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKIL 311 (318)
Q Consensus 259 ~P~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vl 311 (318)
+.+|.|.+|-|+.+.=-++. +.-..||-||.+|-. .=..||+-|-|+.-|+|
T Consensus 204 ~~DlllviGTSl~V~Paa~l~~~a~~~g~~vviIN~~~T~-~D~~ad~~i~~~~~evL 260 (260)
T cd01409 204 EADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTR-ADHLATLKVDARCGEVL 260 (260)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC-CCCCEEEEEECCHHCCC
T ss_conf 0998999837851243678999999879939998999999-98644499927722209
No 78
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=47.75 E-value=21 Score=16.30 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCE-----EECCCCCHH---------HHHHHHH--HHHCCCCEECCCEEECCCC-----
Q ss_conf 100012322455787--4034560-----441578103---------4467888--8751774101320224687-----
Q gi|254780369|r 70 FRHKLAGPVSDFVVS--IARDYKT-----IMASANAMG---------KDILPRV--AAMLDVMQVSEVIEIISPK----- 126 (318)
Q Consensus 70 ~~~~~~~~~a~~l~~--~~~~~~~-----Vl~~~t~~G---------rdlaprl--AarL~~~~vsdvv~i~~~~----- 126 (318)
|....|+.|.+++-- +++++.. |=.|.-+-| ..+|--| -++|..|.++=++.- ++.
T Consensus 132 FGm~~PeGYRKAlRlm~lAekf~~Pvit~IDTpGAypG~~AEerGQaeAIA~nL~~m~~L~vPiisvViGE-GGSGGALA 210 (322)
T CHL00198 132 FGMPSPGGYRKALRLMEHANRFGLPILTFIDTPGAWAGLKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE-GGSGGALG 210 (322)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC-CCCCCCCC
T ss_conf 89998599999999999999709977998328986788763315879999999999967999879999768-87623322
Q ss_pred --EEEEEEECCCEEEEEEECCCCEEEEECCCCC
Q ss_conf --2797410695268999779842799516864
Q gi|254780369|r 127 --IFKRPSYTGNIIQTIETTDTYQIITIRAIAF 157 (318)
Q Consensus 127 --~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf 157 (318)
+.-|-..-.+....+.++.+.+-+..|....
T Consensus 211 l~vaDrvlMle~s~YSVISPEGcAsILwkd~~~ 243 (322)
T CHL00198 211 IGIGDSILMLEYAVYTVATPEACAAILWKDSKK 243 (322)
T ss_pred CCCCCEEEEECCEEEEECCHHHHHHHHCCCHHH
T ss_conf 014674664525178854888877873368024
No 79
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=43.24 E-value=25 Score=15.86 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=28.3
Q ss_pred CCEEEEEECCC----HHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHH
Q ss_conf 93479998189----2688899870789739999448101000123224557874034560441578103
Q gi|254780369|r 35 HDIHVLVLGDN----IENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMG 100 (318)
Q Consensus 35 ~~v~avv~G~~----~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~Vl~~~t~~G 100 (318)
+..+..++-.+ .++.++.+.. .|.|-+.+--......-+.+...+.+.+ ..+-.++|||++..+
T Consensus 15 ~~~H~tliDP~k~~~~~ei~~~~~~-~GTDaImIGGS~gvt~~~~~~~v~~ik~-~~~lPvilfP~~~~~ 82 (240)
T COG1646 15 GKRHLTLIDPDKTEEADEIAEAAAE-AGTDAIMIGGSDGVTEENVDNVVEAIKE-RTDLPVILFPGSPSG 82 (240)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHH-CCCCEEEECCCCCCCHHHHHHHHHHHHH-HCCCCEEEECCCHHC
T ss_conf 6158997476323452899999997-3998899778556447999999999975-069988993588100
No 80
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=42.90 E-value=25 Score=15.83 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=29.1
Q ss_pred EEEEEEEEECCCEECHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 34899998029758789999999998738-93479998189
Q gi|254780369|r 6 MPVLLLADYNQENLSEQTARIVTAAQKIS-HDIHVLVLGDN 45 (318)
Q Consensus 6 M~ilV~~E~~~g~l~~~slEll~~A~~lg-~~v~avv~G~~ 45 (318)
||||+++|.+-|. +.++++.|.+|- .+.++.+++.+
T Consensus 1 ~ki~aisD~RtGn----t~QaiaLa~~l~r~eyttk~l~~~ 37 (329)
T COG3660 1 MKIWAISDGRTGN----THQAIALAEQLTRSEYTTKLLEYN 37 (329)
T ss_pred CCEEEEECCCCCC----HHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9348961587763----899999999860464378995122
No 81
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP#ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECT's, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=42.27 E-value=14 Score=17.58 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=24.1
Q ss_pred EEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 99980297587899999999987389347999818
Q gi|254780369|r 10 LLADYNQENLSEQTARIVTAAQKISHDIHVLVLGD 44 (318)
Q Consensus 10 V~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~ 44 (318)
||..-.=.-++.+-+++|..|+++|+.+-+-+-.+
T Consensus 5 V~~~G~FDl~H~GHi~~L~~Ak~~gd~LiVgv~sD 39 (152)
T cd02173 5 VYVDGAFDLFHIGHIEFLEKARELGDYLIVGVHDD 39 (152)
T ss_pred EEECCEECCCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 99833778699889999999998699799998474
No 82
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=42.00 E-value=4.9 Score=20.40 Aligned_cols=86 Identities=15% Similarity=0.073 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCE--EECCCC---CH---------HHHHHHHHH--HHCCCCEECCCEEECCCC-----
Q ss_conf 100012322455787--4034560--441578---10---------344678888--751774101320224687-----
Q gi|254780369|r 70 FRHKLAGPVSDFVVS--IARDYKT--IMASAN---AM---------GKDILPRVA--AMLDVMQVSEVIEIISPK----- 126 (318)
Q Consensus 70 ~~~~~~~~~a~~l~~--~~~~~~~--Vl~~~t---~~---------GrdlaprlA--arL~~~~vsdvv~i~~~~----- 126 (318)
|....|+.|.+++-- +++++.+ |.|=.| +- +..+|--|. ++|..|.++-|+.- ++.
T Consensus 128 FGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvP~I~iVIGE-GgSGGALA 206 (317)
T COG0825 128 FGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGE-GGSGGALA 206 (317)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCEEEEEECC-CCCHHHHH
T ss_conf 79999268899999999999859987999508987788545650628999999999857999879999657-87524677
Q ss_pred --EEEEEEECCCEEEEEEECCCCEEEEECCCC
Q ss_conf --279741069526899977984279951686
Q gi|254780369|r 127 --IFKRPSYTGNIIQTIETTDTYQIITIRAIA 156 (318)
Q Consensus 127 --~~~rp~fgG~~~a~v~~~~~~~viTvr~~s 156 (318)
+.-|-..--+....+.++.+..-+..+-.+
T Consensus 207 i~vad~V~mle~s~ySVisPEG~AsILWkD~~ 238 (317)
T COG0825 207 IGVADRVLMLENSTYSVISPEGCASILWKDAS 238 (317)
T ss_pred HHHHHHHHHHHHCEEEECCHHHHHHHHHCCHH
T ss_conf 65778999988441220473132445525832
No 83
>TIGR00761 argB acetylglutamate kinase; InterPro: IPR004662 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts as well as some, as yet, uncharacterised proteins.; GO: 0003991 acetylglutamate kinase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=39.72 E-value=13 Score=17.66 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHCCCC---EECCCEEE
Q ss_conf 810344678888751774---10132022
Q gi|254780369|r 97 NAMGKDILPRVAAMLDVM---QVSEVIEI 122 (318)
Q Consensus 97 t~~GrdlaprlAarL~~~---~vsdvv~i 122 (318)
+-++--.|..||..|++. ++||+-.|
T Consensus 173 NvNAD~aA~~lA~~L~A~kL~~LtDv~Gi 201 (254)
T TIGR00761 173 NVNADTAAGELAAALGAEKLVLLTDVPGI 201 (254)
T ss_pred ECCHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 06777999999986099538884174032
No 84
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=39.43 E-value=29 Score=15.49 Aligned_cols=93 Identities=23% Similarity=0.362 Sum_probs=62.4
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCC-CHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHC--
Q ss_conf 4564136777783356889999987639859742578867888-8889540159754573899996167264555516--
Q gi|254780369|r 203 KIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFA-PNDWQIGQTGVTVSPELYIAAGISGAIQHISGMK-- 279 (318)
Q Consensus 203 ~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~-p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~-- 279 (318)
+|++. |+|. .++ ..++++.+|- -+| ...-|+ +.+.+.++-|..=+=++.|.+=-||..+.+..+-
T Consensus 2 RI~~~---GvG~-S~~--va~~~~~kl~-r~G-----~~s~~~~~~~~~~~~~~~i~~~Dv~i~iS~SG~T~e~~~~~~~ 69 (128)
T cd05014 2 KVVVT---GVGK-SGH--IARKIAATLS-STG-----TPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPH 69 (128)
T ss_pred EEEEE---ECCH-HHH--HHHHHHHHHH-HCC-----CCEEECCCHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 49999---4267-999--9999999999-579-----9457547315554113477899999999799998679999999
Q ss_pred ---CCCEEEEEECCCCCCHHHCCCEEEECCH
Q ss_conf ---8988999766599883102764575238
Q gi|254780369|r 280 ---DSKVIVSINTDENAPIFKISDYFIVGDI 307 (318)
Q Consensus 280 ---~s~~IvAIN~D~~ApIf~~ad~giv~D~ 307 (318)
.-=.+|+|-++++.|+-+.|||.+.-+.
T Consensus 70 ak~~g~~vI~iT~~~~S~La~~ad~~l~~~~ 100 (128)
T cd05014 70 LKRRGAPIIAITGNPNSTLAKLSDVVLDLPV 100 (128)
T ss_pred HHHCCCCEEEEECCCCCHHHHHCCEEEECCC
T ss_conf 9863785899987999967996898997799
No 85
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=37.30 E-value=31 Score=15.28 Aligned_cols=26 Identities=8% Similarity=0.028 Sum_probs=16.1
Q ss_pred CCHHHCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 6700074564136777783356889999987
Q gi|254780369|r 197 TDLSSAKIVISGGKSFGSMENFHKLLLPLAK 227 (318)
Q Consensus 197 v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~ 227 (318)
..+.+.+.++-.|||- .|. +.++.|=
T Consensus 196 ~~~~~~~~i~~lGsG~----~~g-~A~e~aL 221 (340)
T COG2222 196 EEYADEDRIYTLGSGP----LYG-AAYEAAL 221 (340)
T ss_pred HHHCCCCEEEEECCCC----CHH-HHHHHHH
T ss_conf 9735897799977852----179-9999999
No 86
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=36.94 E-value=31 Score=15.24 Aligned_cols=87 Identities=15% Similarity=0.084 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHH--HCCCCCE--EE---CCCCCHH---------HHHHHHHH--HHCCCCEECCCEEECCCC-----
Q ss_conf 100012322455787--4034560--44---1578103---------44678888--751774101320224687-----
Q gi|254780369|r 70 FRHKLAGPVSDFVVS--IARDYKT--IM---ASANAMG---------KDILPRVA--AMLDVMQVSEVIEIISPK----- 126 (318)
Q Consensus 70 ~~~~~~~~~a~~l~~--~~~~~~~--Vl---~~~t~~G---------rdlaprlA--arL~~~~vsdvv~i~~~~----- 126 (318)
|....|+.|.+++-- +++++.. |- .|.-+-| ..+|--+. .+|..|.++=++. +++.
T Consensus 128 FGm~~PeGYRKAlRlm~lAekf~~Pvit~IDTpGAypG~~AEerGqaeAIA~~l~~m~~l~vPiisviiG-EGgSGGALa 206 (318)
T PRK05724 128 FGMPRPEGYRKALRLMEMAERFGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG-EGGSGGALA 206 (318)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC-CCCCHHHHH
T ss_conf 7999917899999999999970997799934897678987631388999999999996899987999977-887444777
Q ss_pred --EEEEEEECCCEEEEEEECCCCEEEEECCCCC
Q ss_conf --2797410695268999779842799516864
Q gi|254780369|r 127 --IFKRPSYTGNIIQTIETTDTYQIITIRAIAF 157 (318)
Q Consensus 127 --~~~rp~fgG~~~a~v~~~~~~~viTvr~~sf 157 (318)
+.-|-..-.+....+.++.++.-+..|....
T Consensus 207 l~~~d~v~Mle~a~YSViSPEgcAsILwkd~~~ 239 (318)
T PRK05724 207 IGVGDRVLMLEHSTYSVISPEGCASILWKDAAK 239 (318)
T ss_pred HHCCCEEEEECCEEEEECCHHHHHHHHHCCHHH
T ss_conf 724685888447188854877766876258867
No 87
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=36.11 E-value=7.8 Score=19.09 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHCCCEEEEC
Q ss_conf 997665998831027645752
Q gi|254780369|r 285 VSINTDENAPIFKISDYFIVG 305 (318)
Q Consensus 285 vAIN~D~~ApIf~~ad~giv~ 305 (318)
.-+|.||.|-+|+.++||+--
T Consensus 369 ~eVD~dPRAaYFRQa~nGv~V 389 (430)
T PRK11891 369 TDLNRDPRLAIFRQTDNGIPV 389 (430)
T ss_pred HHHCCCCCHHHHHHHHCCHHH
T ss_conf 524589610388887518999
No 88
>pfam01380 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway.
Probab=36.09 E-value=32 Score=15.16 Aligned_cols=98 Identities=22% Similarity=0.303 Sum_probs=57.5
Q ss_pred HHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHH
Q ss_conf 00074564136777783356889999987639859742578867888888954015975457389999616726455551
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGM 278 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~ 278 (318)
|.+|+.|+=.|.|- .+. ..++++..|. .+|--.-.++ -+++.+-++-...=+=++.|++.-||...-+.-.
T Consensus 2 l~~a~rI~~~G~G~----S~~-~A~~~~~~l~-~~g~~~~~~~---~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~ 72 (131)
T pfam01380 2 LAKAKRIYVIGAGT----SYA-AALELALKLE-EIGYIVVEVE---DASEFRHGPLALVDPDDLVIAISQSGETRDLLEA 72 (131)
T ss_pred CCCCCEEEEEEECH----HHH-HHHHHHHHHH-HHCCCCEEEC---CHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 76789899999326----999-9999999999-8689877863---6588660675679999999995489865768987
Q ss_pred ------CCCCEEEEEECCCCCCHHHCCCEEEECC
Q ss_conf ------6898899976659988310276457523
Q gi|254780369|r 279 ------KDSKVIVSINTDENAPIFKISDYFIVGD 306 (318)
Q Consensus 279 ------~~s~~IvAIN~D~~ApIf~~ad~giv~D 306 (318)
+++ .+|+|-++++.|+-+.||+.+.-.
T Consensus 73 ~~~a~~~g~-~~i~iT~~~~S~la~~ad~~l~~~ 105 (131)
T pfam01380 73 AKLLKARGA-KIIAITDSKGSPLAREADHVLYII 105 (131)
T ss_pred HHHHHHCCC-EEEEEECCCCCHHHHHCCEEEECC
T ss_conf 899998499-699998999997899689989879
No 89
>KOG2666 consensus
Probab=35.57 E-value=31 Score=15.25 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHCCCC
Q ss_conf 66670007456413677778335688999998763985974257886788888895401597
Q gi|254780369|r 195 SPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGV 256 (318)
Q Consensus 195 ~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~qIG~tG~ 256 (318)
.--||...+.|.-||| ..+|+| +-++.|.+. -+.|+|+++-+ .|..
T Consensus 164 Ai~DL~npDRVLIGG~--etpeG~-~Av~~L~~v------------Y~~WvP~~~Ii-tTN~ 209 (481)
T KOG2666 164 AIKDLFNPDRVLIGGR--ETPEGF-QAVQALKDV------------YEHWVPREQII-TTNT 209 (481)
T ss_pred HHHHHCCCCEEEECCC--CCHHHH-HHHHHHHHH------------HHHHCCHHHEE-ECCC
T ss_conf 4554148773888787--782578-999999999------------98518611055-4151
No 90
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.77 E-value=34 Score=15.03 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=14.7
Q ss_pred EECHHHHHHHHHHHH---H--------CCCEEEEEEC
Q ss_conf 587899999999987---3--------8934799981
Q gi|254780369|r 18 NLSEQTARIVTAAQK---I--------SHDIHVLVLG 43 (318)
Q Consensus 18 ~l~~~slEll~~A~~---l--------g~~v~avv~G 43 (318)
+-.+.++|++.+|.. | .+++.+++.+
T Consensus 50 kT~~~A~eA~raAaA~LlLAk~PVISVNGN~AAL~p~ 86 (256)
T COG1701 50 KTIPPALEAIRAAAAALLLAKHPVISVNGNVAALVPE 86 (256)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCH
T ss_conf 5576599999999999985269769875855443718
No 91
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=34.19 E-value=12 Score=17.84 Aligned_cols=33 Identities=6% Similarity=0.150 Sum_probs=12.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCC---CCCEEEC
Q ss_conf 73999944810100012322455787403---4560441
Q gi|254780369|r 59 VTQVIVAQSTIFRHKLAGPVSDFVVSIAR---DYKTIMA 94 (318)
Q Consensus 59 ad~V~~~~~~~~~~~~~~~~a~~l~~~~~---~~~~Vl~ 94 (318)
.+.|-.+.++- -.++..-+.+..+-+ +.++|+-
T Consensus 73 ~~nv~fi~GDf---tdee~l~ki~~~~g~dekk~DVV~S 108 (192)
T TIGR00438 73 IENVDFIRGDF---TDEEVLNKILERVGDDEKKVDVVMS 108 (192)
T ss_pred CCCEEEEECCC---CCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 46614754476---7878999999857898743778985
No 92
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=33.43 E-value=36 Score=14.89 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=37.8
Q ss_pred CEECCCEEEEEEECCHHHHHHHH----CC-CCEEEEEECCCCCCHHHCCCEEEECCH
Q ss_conf 75457389999616726455551----68-988999766599883102764575238
Q gi|254780369|r 256 VTVSPELYIAAGISGAIQHISGM----KD-SKVIVSINTDENAPIFKISDYFIVGDI 307 (318)
Q Consensus 256 ~~v~P~lYia~GISGa~qH~~G~----~~-s~~IvAIN~D~~ApIf~~ad~giv~D~ 307 (318)
..-+++|+|++--||...-+... ++ --.+|+|-++++.|+-+.||+.+--+.
T Consensus 43 ~~~~~~lvI~iS~SG~t~e~i~a~~~a~~~g~~~i~iT~~~~S~la~~ad~~i~~~~ 99 (126)
T cd05008 43 LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRA 99 (126)
T ss_pred CCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCC
T ss_conf 899985999986897980078899999982994898706999978996898798698
No 93
>cd02171 G3P_Cytidylyltransferase These sequences describe glycerol-3-phosphate cytidylyltransferase, also called CDP-glycerol pyrophosphorylase. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase . Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=33.32 E-value=36 Score=14.88 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=44.0
Q ss_pred EEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCC------------HHHHHHHHHCCCCCCEEEEECCCHHHHH
Q ss_conf 3489999802975878999999999873893479998189------------2688899870789739999448101000
Q gi|254780369|r 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDN------------IENIAQQAARIQGVTQVIVAQSTIFRHK 73 (318)
Q Consensus 6 M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~------------~~~~a~~~~~~~Gad~V~~~~~~~~~~~ 73 (318)
||+ ||..-.=.-++.+-+++|-.|+++|+.+.+-+-.+. .++=...+.++.-+|+|+.......
T Consensus 1 mKv-v~~~G~FDllH~GHi~~l~~Ak~lgd~LiVgv~sDe~~~~k~~~Pi~~~~eR~~~l~~~k~VD~Vv~~~~~~~--- 76 (129)
T cd02171 1 MKV-VITYGTFDLFHIGHVRLLKRAKALGDKLIVGVSTDEFNAGKGKKAFYPYEQRAEILEAIRYVDLVIPETNWEQ--- 76 (129)
T ss_pred CEE-EEECCEECCCCHHHHHHHHHHHHHCCEEEEEECCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCC---
T ss_conf 979-9992660789999999999999849989999533599985699988899999999974998388980899523---
Q ss_pred HHHHHHHHHHHHCCCCCEEECCCCCHHH
Q ss_conf 1232245578740345604415781034
Q gi|254780369|r 74 LAGPVSDFVVSIARDYKTIMASANAMGK 101 (318)
Q Consensus 74 ~~~~~a~~l~~~~~~~~~Vl~~~t~~Gr 101 (318)
..+.+.+ -+|++++.+..+.++
T Consensus 77 ----~~~~i~~--~~~D~~v~G~D~~~~ 98 (129)
T cd02171 77 ----KIEDIKK--YNVDIFVMGDDWEGK 98 (129)
T ss_pred ----CHHHHHH--HCCCEEEECCCCCCC
T ss_conf ----6999996--497999878743674
No 94
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=32.37 E-value=37 Score=14.78 Aligned_cols=86 Identities=23% Similarity=0.390 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH-----HHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEECC
Q ss_conf 3568899999876398597425788678888889-----54015975457389999616726455551689889997665
Q gi|254780369|r 216 ENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDW-----QIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTD 290 (318)
Q Consensus 216 enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~-----qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN~D 290 (318)
||- +-++..|+.||= .-|-++-+|.+. +.=+.|++| ..+.=||--|+- +..++.=||+.+-
T Consensus 562 Dn~-~~A~~iA~~lGI------d~v~A~llPedK~~~V~~l~~~g~~V---amVGDGINDAPA----LA~AdVGIAmG~G 627 (713)
T COG2217 562 DNR-RTAEAIAKELGI------DEVRAELLPEDKAEIVRELQAEGRKV---AMVGDGINDAPA----LAAADVGIAMGSG 627 (713)
T ss_pred CCH-HHHHHHHHHCCH------HHEECCCCCHHHHHHHHHHHHCCCEE---EEEECCCHHHHH----HHHCCEEEEECCC
T ss_conf 998-999999997392------62350799188999999999659979---998288315788----8517843653686
Q ss_pred CCCCHHHCCCEEEECCHHHHHHHHHH
Q ss_conf 99883102764575238999999886
Q gi|254780369|r 291 ENAPIFKISDYFIVGDIFKILPEIEK 316 (318)
Q Consensus 291 ~~ApIf~~ad~giv~D~~~vlp~l~~ 316 (318)
-+.. .+-||.-++.|=..-+|.+++
T Consensus 628 tDvA-~eaADvvL~~~dL~~v~~ai~ 652 (713)
T COG2217 628 TDVA-IEAADVVLMRDDLSAVPEAID 652 (713)
T ss_pred CHHH-HHHCCEEEECCCHHHHHHHHH
T ss_conf 1878-975899996698888999999
No 95
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=30.44 E-value=40 Score=14.58 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred HHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHH
Q ss_conf 00074564136777783356889999987639859742578867888888954015975457389999616726455551
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGM 278 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~ 278 (318)
|..|+.|+-.|.| ..++ +.++++..|. .+|- + .-|+... .++..=.=++.|++=-||...++.-+
T Consensus 27 I~~a~~I~v~G~G---~Sg~--ia~~~a~rL~-~~G~--~---~~~~~d~----~~~~i~~~Dv~I~iS~SGeT~e~~~~ 91 (179)
T TIGR03127 27 IIKAKRIFVAGAG---RSGL--VGKAFAMRLM-HLGF--N---VYVVGET----TTPSIKKGDLLIAISGSGETESLVTV 91 (179)
T ss_pred HHCCCCEEEEEEC---CHHH--HHHHHHHHHH-HCCC--E---EEEECCC----CCCCCCCCCEEEEECCCCCCHHHHHH
T ss_conf 9739909999955---4399--9999999998-5197--5---7997644----44669999999998199996899999
Q ss_pred -----CCCCEEEEEECCCCCCHHHCCCEEEE
Q ss_conf -----68988999766599883102764575
Q gi|254780369|r 279 -----KDSKVIVSINTDENAPIFKISDYFIV 304 (318)
Q Consensus 279 -----~~s~~IvAIN~D~~ApIf~~ad~giv 304 (318)
+.--.||+|-.+++.|+-++||+-+.
T Consensus 92 ~~~aK~~ga~ii~IT~~~~S~Lak~aD~~l~ 122 (179)
T TIGR03127 92 AKKAKEIGATVAAITTNPESTLGKLADVVVE 122 (179)
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHCCEEEE
T ss_conf 9999987992999979898977994999999
No 96
>TIGR01011 rpsB_bact ribosomal protein S2; InterPro: IPR005706 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . This family describes the bacterial, mitochondrial and chloroplast forms of ribosomal protein S2.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=30.42 E-value=39 Score=14.63 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=12.9
Q ss_pred CCEEECCCCC--HHHHHHHHHHHHCCCCEECC
Q ss_conf 5604415781--03446788887517741013
Q gi|254780369|r 89 YKTIMASANA--MGKDILPRVAAMLDVMQVSE 118 (318)
Q Consensus 89 ~~~Vl~~~t~--~GrdlaprlAarL~~~~vsd 118 (318)
-.-|||=+|- +-+++..-.|-|.|..||++
T Consensus 63 gg~iLFVGTKNkQA~~~i~~~A~r~g~~YVn~ 94 (227)
T TIGR01011 63 GGKILFVGTKNKQAKEIIKEEAERCGMFYVNQ 94 (227)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHHCCCCEECC
T ss_conf 99588851658899999999998748962113
No 97
>PRK10490 sensor protein KdpD; Provisional
Probab=30.13 E-value=41 Score=14.54 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=49.1
Q ss_pred EEEEEEECC-CEECHHHH----HHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 899998029-75878999----9999998738934799981892688899870789739999448101000123224557
Q gi|254780369|r 8 VLLLADYNQ-ENLSEQTA----RIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFV 82 (318)
Q Consensus 8 ilV~~E~~~-g~l~~~sl----Ell~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l 82 (318)
+.||.|..+ ..+.+... ..+..|++||.++..+ .|++.....-+.++.++++++..-....-.-+.-..+.+-+
T Consensus 282 ~~~~v~~~~~~~~~~~~~~~~~~~~~LAe~LGa~v~~l-~G~dva~~il~~Ar~~nvT~IVlGrs~~rrw~~r~sl~drL 360 (895)
T PRK10490 282 HAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATL-SDPAEEKAVVRYAREHNLGKIIIGRPASRRWWRRETFADRL 360 (895)
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEE-ECCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 99999644445798778999999999999819989998-37988999999999839998998887887503378899999
Q ss_pred HHHCCCCCEEECC
Q ss_conf 8740345604415
Q gi|254780369|r 83 VSIARDYKTIMAS 95 (318)
Q Consensus 83 ~~~~~~~~~Vl~~ 95 (318)
.+...+.++.+.+
T Consensus 361 i~~a~~IDVhiV~ 373 (895)
T PRK10490 361 ARLAPDLDQVIVA 373 (895)
T ss_pred HHHCCCCEEEEEC
T ss_conf 8718997499953
No 98
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=29.80 E-value=41 Score=14.51 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEH
Q ss_conf 67000745641367777833568899999876398597425
Q gi|254780369|r 197 TDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATR 237 (318)
Q Consensus 197 v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SR 237 (318)
|+=...+|||+||-=+.+.+.|.|.+++--++=+|-|..=|
T Consensus 189 V~~c~~PVvvAGG~k~~s~~efLq~v~DA~~aGAAGvs~GR 229 (259)
T TIGR01949 189 VKACAVPVVVAGGPKLASDREFLQMVKDAMEAGAAGVSVGR 229 (259)
T ss_pred HCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC
T ss_conf 62178777873777988746777889999981878231056
No 99
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.63 E-value=41 Score=14.49 Aligned_cols=46 Identities=28% Similarity=0.515 Sum_probs=30.5
Q ss_pred CEEEEEEECCHHHHHHH-H---CC-CCEEEEEECCCCCCHHHCCCEEEECC
Q ss_conf 38999961672645555-1---68-98899976659988310276457523
Q gi|254780369|r 261 ELYIAAGISGAIQHISG-M---KD-SKVIVSINTDENAPIFKISDYFIVGD 306 (318)
Q Consensus 261 ~lYia~GISGa~qH~~G-~---~~-s~~IvAIN~D~~ApIf~~ad~giv~D 306 (318)
+|+|++--||-..-+.- + |. --.+|+|-++++.||-+.|||.|.-.
T Consensus 49 ~lvi~iS~SG~T~e~i~a~~~ak~~g~~tiaiT~~~~S~la~~aD~~i~~g 99 (120)
T cd05710 49 SVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYG 99 (120)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEECC
T ss_conf 699998379897899999999998699599998989898799679888889
No 100
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=28.58 E-value=43 Score=14.37 Aligned_cols=126 Identities=16% Similarity=0.285 Sum_probs=65.6
Q ss_pred EEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHHHHHCCCCCCEEEEE--CCCH--------HHHH----
Q ss_conf 9999802975878999999999873893479998-18926888998707897399994--4810--------1000----
Q gi|254780369|r 9 LLLADYNQENLSEQTARIVTAAQKISHDIHVLVL-GDNIENIAQQAARIQGVTQVIVA--QSTI--------FRHK---- 73 (318)
Q Consensus 9 lV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~-G~~~~~~a~~~~~~~Gad~V~~~--~~~~--------~~~~---- 73 (318)
+|+.+.+-. .-..++++..-++...++-++++ |.+.-+.|.++.+. ||-.-+.- +-+. +...
T Consensus 51 lvl~Di~mp--~~~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~-GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~ 127 (464)
T COG2204 51 LVLLDIRMP--GMDGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRL-GAFDFLEKPFDLDRLLAIVERALELRELQR 127 (464)
T ss_pred EEEEECCCC--CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHC-CCCEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 899816789--99669999999963899988998288999999999855-703332189999999999999998765322
Q ss_pred ---------------------HHHHHHHHHHHHCC-CCCEEECCCCCHHHHHHHH----HHHHCCCCEEC-CCEEECCCC
Q ss_conf ---------------------12322455787403-4560441578103446788----88751774101-320224687
Q gi|254780369|r 74 ---------------------LAGPVSDFVVSIAR-DYKTIMASANAMGKDILPR----VAAMLDVMQVS-EVIEIISPK 126 (318)
Q Consensus 74 ---------------------~~~~~a~~l~~~~~-~~~~Vl~~~t~~Grdlapr----lAarL~~~~vs-dvv~i~~~~ 126 (318)
..+.+-..+.+++. +..+++.+-|=.||++.+| .+.|-+.|+++ ||-.+....
T Consensus 128 e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 128 ENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCHHH
T ss_conf 21000001345567752069999999999999847799789977898758999999986074458992563346489888
Q ss_pred ----E--EEEEEECCCE
Q ss_conf ----2--7974106952
Q gi|254780369|r 127 ----I--FKRPSYTGNI 137 (318)
Q Consensus 127 ----~--~~rp~fgG~~ 137 (318)
. .++-+|.|..
T Consensus 208 ~ESELFGhekGAFTGA~ 224 (464)
T COG2204 208 LESELFGHEKGAFTGAI 224 (464)
T ss_pred HHHHHHCCCCCCCCCCC
T ss_conf 77776145656767764
No 101
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=27.87 E-value=37 Score=14.82 Aligned_cols=12 Identities=25% Similarity=0.091 Sum_probs=5.4
Q ss_pred HHHHHHHHCCCE
Q ss_conf 999998763985
Q gi|254780369|r 221 LLLPLAKKLGAA 232 (318)
Q Consensus 221 l~~~LA~~Lgaa 232 (318)
+...+|..|+|.
T Consensus 182 ~A~~lA~aL~Ad 193 (279)
T cd04250 182 AAGAIAAALKAE 193 (279)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999986449
No 102
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=27.81 E-value=38 Score=14.75 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=17.6
Q ss_pred EEE-EEEEEEECCCEECHHHHHHHHHHHHHCCCEEEE
Q ss_conf 234-899998029758789999999998738934799
Q gi|254780369|r 5 DMP-VLLLADYNQENLSEQTARIVTAAQKISHDIHVL 40 (318)
Q Consensus 5 ~M~-ilV~~E~~~g~l~~~slEll~~A~~lg~~v~av 40 (318)
++| |+++. +|.|.. -+.-+|++||-++.++
T Consensus 11 ~~kkIgIlG---gGQLg~---Mla~aA~~LG~~vivl 41 (395)
T PRK09288 11 SATRVMLLG---SGELGK---EVAIEAQRLGVEVIAV 41 (395)
T ss_pred CCCEEEEEC---CCHHHH---HHHHHHHHCCCEEEEE
T ss_conf 988899989---889999---9999999879989998
No 103
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=27.22 E-value=46 Score=14.22 Aligned_cols=31 Identities=6% Similarity=0.188 Sum_probs=24.1
Q ss_pred CEEECCCCCHHHHHHHHHHHHCCCCEECCCE
Q ss_conf 6044157810344678888751774101320
Q gi|254780369|r 90 KTIMASANAMGKDILPRVAAMLDVMQVSEVI 120 (318)
Q Consensus 90 ~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv 120 (318)
++=|-+.++.-+....++|++.+-..+..+.
T Consensus 59 SVGLGaGDp~Q~~~Va~Ia~~~~P~HVNQvF 89 (236)
T TIGR03581 59 SVGLGAGDPNQSAMVADISAHTQPQHINQVF 89 (236)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8842799979999999999874976546415
No 104
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=27.07 E-value=46 Score=14.21 Aligned_cols=96 Identities=13% Similarity=0.157 Sum_probs=57.6
Q ss_pred EEEEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 02348999980297587899999999987389347999818926888998707897399994481010001232245578
Q gi|254780369|r 4 CDMPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVV 83 (318)
Q Consensus 4 ~~M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~ 83 (318)
.||+|-+++-| ++|+++-.|++-|-+.-+++-.. -+..- .++-.+|+++..++ |.+.. +...
T Consensus 17 ~~i~I~tl~SH-------SALqIl~GAK~EGF~T~~vc~~g-r~~~Y---~~f~~~De~iv~d~--f~di~-----~~q~ 78 (356)
T PRK13278 17 DNITIATIGSH-------SSLQILKGAKKEGFRTIAICEKK-REKFY---KRFPFADEFIIVDS--FSDIL-----EIQE 78 (356)
T ss_pred CCCEEEEEECH-------HHHHHHCCHHHCCCCEEEEECCC-CCCHH---HHCCCCCEEEEECC--HHHHH-----HHHH
T ss_conf 45389998442-------59888532877399579996699-74534---54776427999476--89999-----9999
Q ss_pred HHCCCCCEEECCCCCHHHHHHHHHHHHCCCCEECC
Q ss_conf 74034560441578103446788887517741013
Q gi|254780369|r 84 SIARDYKTIMASANAMGKDILPRVAAMLDVMQVSE 118 (318)
Q Consensus 84 ~~~~~~~~Vl~~~t~~GrdlaprlAarL~~~~vsd 118 (318)
++ .+-..|+.||.++--.+...---.+..|+..|
T Consensus 79 ~L-~~~NaI~IPhgSfv~Y~G~~~iE~~~VP~FGN 112 (356)
T PRK13278 79 EL-REMNAIVIPHGSFVAYLGLENVEEFKVPMFGN 112 (356)
T ss_pred HH-HHCCEEEECCCCEEEEECHHHHHHCCCCCCCC
T ss_conf 99-87896996488858983688885088882058
No 105
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=26.63 E-value=47 Score=14.15 Aligned_cols=90 Identities=23% Similarity=0.364 Sum_probs=55.0
Q ss_pred HHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHHHCCCC-EECC-CEEEEEEECCHHHHHH
Q ss_conf 0007456413677778335688999998763985974257886788888895401597-5457-3899996167264555
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGV-TVSP-ELYIAAGISGAIQHIS 276 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~qIG~tG~-~v~P-~lYia~GISGa~qH~~ 276 (318)
|..|+.|+-.|.|- .++ ..+.+|..|. .+|- + .-|+ |.++. .+.| |+.|++=-||...++.
T Consensus 30 I~~a~~I~~~G~G~---Sg~--va~~~a~rl~-~lG~--~---~~~~------~d~~~~~i~~~Dv~I~iS~SG~T~~~~ 92 (179)
T cd05005 30 ILNAKRIFVYGAGR---SGL--VAKAFAMRLM-HLGL--N---VYVV------GETTTPAIGPGDLLIAISGSGETSSVV 92 (179)
T ss_pred HHCCCCEEEEEECC---HHH--HHHHHHHHHH-HCCC--C---EEEE------CCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97499489998562---587--7999999997-3598--0---1243------565557799999999981999956899
Q ss_pred HH-----CCCCEEEEEECCCCCCHHHCCCEEEEC
Q ss_conf 51-----689889997665998831027645752
Q gi|254780369|r 277 GM-----KDSKVIVSINTDENAPIFKISDYFIVG 305 (318)
Q Consensus 277 G~-----~~s~~IvAIN~D~~ApIf~~ad~giv~ 305 (318)
.+ +.--.||+|-.+++.|+-++||+-+.=
T Consensus 93 ~~~~~aK~~ga~iI~IT~~~~S~la~~aD~~l~i 126 (179)
T cd05005 93 NAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVI 126 (179)
T ss_pred HHHHHHHHCCCEEEEEECCCCCHHHHHCCEEEEC
T ss_conf 9999999879919999798999789958999981
No 106
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=26.41 E-value=36 Score=14.87 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=6.7
Q ss_pred HHHHHHHHHCCCEEEEEE
Q ss_conf 999999873893479998
Q gi|254780369|r 25 RIVTAAQKISHDIHVLVL 42 (318)
Q Consensus 25 Ell~~A~~lg~~v~avv~ 42 (318)
|.+-|=+++-++.-|+-+
T Consensus 13 ea~pYi~~~rgktfVIk~ 30 (284)
T CHL00202 13 EALPYIQKFRGRIMVIKY 30 (284)
T ss_pred HHHHHHHHHCCCEEEEEE
T ss_conf 977999996899899998
No 107
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=26.13 E-value=48 Score=14.10 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=35.1
Q ss_pred EEEEEEECCCEECHHHHHHHHHHH----HHCCCEEEEEECCCH-----H------HHHHHHHCCCCCCEEEEECCCHHHH
Q ss_conf 899998029758789999999998----738934799981892-----6------8889987078973999944810100
Q gi|254780369|r 8 VLLLADYNQENLSEQTARIVTAAQ----KISHDIHVLVLGDNI-----E------NIAQQAARIQGVTQVIVAQSTIFRH 72 (318)
Q Consensus 8 ilV~~E~~~g~l~~~slEll~~A~----~lg~~v~avv~G~~~-----~------~~a~~~~~~~Gad~V~~~~~~~~~~ 72 (318)
|||-.+. ++.+-.++..|. +++.++.++-+-... . ....++.+..|+.-+... +.
T Consensus 2 ILV~vd~-----s~~s~~lir~a~rlA~~~~a~l~vl~V~~~~~~~~~~~~~~~l~~~~~la~~lga~~~~~~-~~---- 71 (124)
T cd01987 2 ILVCISG-----GPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAEVVTLP-GD---- 71 (124)
T ss_pred EEEEECC-----CHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CC----
T ss_conf 9999589-----8507999999999999649989999995597565897999999999999998599899994-79----
Q ss_pred HHHHHHHHHHHHHCC--CCCEEECCCCCHH
Q ss_conf 012322455787403--4560441578103
Q gi|254780369|r 73 KLAGPVSDFVVSIAR--DYKTIMASANAMG 100 (318)
Q Consensus 73 ~~~~~~a~~l~~~~~--~~~~Vl~~~t~~G 100 (318)
..++.|.+.++ +.+.|+++++..+
T Consensus 72 ----d~~~~I~~~A~~~~~t~IVlG~~~~~ 97 (124)
T cd01987 72 ----DVAEAIVEFAREHNVTQIVVGKSRRS 97 (124)
T ss_pred ----CHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf ----98999999999849989997689885
No 108
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=26.01 E-value=48 Score=14.08 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEC---CCHHHHHH--HHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCC--CCC--E
Q ss_conf 89999999998738934799981---89268889--987078973999944810100012322455787403--456--0
Q gi|254780369|r 21 EQTARIVTAAQKISHDIHVLVLG---DNIENIAQ--QAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIAR--DYK--T 91 (318)
Q Consensus 21 ~~slEll~~A~~lg~~v~avv~G---~~~~~~a~--~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~--~~~--~ 91 (318)
+.+.+.+..||++|-++...+.- ...+.+++ ....-+|++.|+..|.- ....|+.+.+.+..+.+ +++ +
T Consensus 115 d~~~~~i~~ar~~G~~v~~~lm~s~~~~~e~l~~~a~~~~~~Gad~I~l~DT~--G~~~P~~v~~~v~~l~~~l~~~i~i 192 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMSHMASPEKLAEQAKLMESYGAQCVYVVDSA--GALLPDDVRARVRALRAALKPDTQV 192 (337)
T ss_pred HHHHHHHHHHHHCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf 77999999999779939997511024899999999999986599999978987--6679999999999999864998549
Q ss_pred EECCCCCHHHHHHHHHHHHCCCCEECCCE
Q ss_conf 44157810344678888751774101320
Q gi|254780369|r 92 IMASANAMGKDILPRVAAMLDVMQVSEVI 120 (318)
Q Consensus 92 Vl~~~t~~GrdlaprlAarL~~~~vsdvv 120 (318)
=+=.|+..|..++--|++--...-.-||+
T Consensus 193 gfH~HNnlGlAvANslaAveaGA~~ID~T 221 (337)
T PRK08195 193 GFHGHHNLGLGVANSLAAVEAGADRIDAS 221 (337)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 99853886759999999998099999850
No 109
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=25.36 E-value=49 Score=14.01 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=39.0
Q ss_pred EEEEEEEEECCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 34899998029758789999999998738934799981892688899870789739999448101000123224557874
Q gi|254780369|r 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSI 85 (318)
Q Consensus 6 M~ilV~~E~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~ 85 (318)
|+|||-. .++ -..++.+-|+.+.+.. ++|.+.+..+.. .+-+|+.|...... .+.|.+.|.++
T Consensus 2 ~nILvt~--~G~-----~~~ii~~lk~~~~~~~--Vi~~D~~~~a~~---~~~aD~~y~~P~~~-----d~~y~~~ll~i 64 (325)
T PRK12767 2 MNILVTS--AGR-----RVQLVKALKKSLLGGK--VIGADISPLAPA---LYFADKFYVVPKVT-----DPNYIDALLDI 64 (325)
T ss_pred CEEEEEC--CCC-----HHHHHHHHHHCCCCCE--EEEECCCCCCCC---HHHCCEEEECCCCC-----CHHHHHHHHHH
T ss_conf 4899986--786-----8999999997699859--999689989953---44548899878889-----87899999999
Q ss_pred CCC--CCEEECCCC
Q ss_conf 034--560441578
Q gi|254780369|r 86 ARD--YKTIMASAN 97 (318)
Q Consensus 86 ~~~--~~~Vl~~~t 97 (318)
+++ +++|+ |.+
T Consensus 65 ~~~~~id~ii-P~~ 77 (325)
T PRK12767 65 CKKENIDALI-PLI 77 (325)
T ss_pred HHHHCCCEEE-ECC
T ss_conf 9987999999-778
No 110
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.31 E-value=49 Score=14.00 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=3.1
Q ss_pred CCCHHHCCCE
Q ss_conf 9883102764
Q gi|254780369|r 292 NAPIFKISDY 301 (318)
Q Consensus 292 ~ApIf~~ad~ 301 (318)
+.|+.+.+|+
T Consensus 165 ~s~l~~~ad~ 174 (296)
T PRK12570 165 DSPIAQLADI 174 (296)
T ss_pred CHHHHHHCCE
T ss_conf 3245662675
No 111
>pfam02006 DUF137 Protein of unknown function DUF137. This family of archaeal proteins has no known function.
Probab=25.11 E-value=50 Score=13.98 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=33.2
Q ss_pred ECCCEECHHHHHHHHHHHHHCCCEEEEEECCCH---HHHHHHHHCCCCCCEEEEECC
Q ss_conf 029758789999999998738934799981892---688899870789739999448
Q gi|254780369|r 14 YNQENLSEQTARIVTAAQKISHDIHVLVLGDNI---ENIAQQAARIQGVTQVIVAQS 67 (318)
Q Consensus 14 ~~~g~l~~~slEll~~A~~lg~~v~avv~G~~~---~~~a~~~~~~~Gad~V~~~~~ 67 (318)
.+++...-..-|++..|+.++.++.+-+|-... +.+.+ .++-+|+++|+-...
T Consensus 11 VNGN~aaLa~~e~v~La~~~~a~iEVNlFyRT~eR~~~I~~-~L~~~g~~~vlG~~~ 66 (178)
T pfam02006 11 VNGNTAALVPEEIVELAEALGAKIEVNLFYRTEERVEKIAE-VLREHGAKEVLGVGP 66 (178)
T ss_pred ECCCHHHCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH-HHHHCCCCEEECCCC
T ss_conf 75851314849899999980998899943489899999999-999759755544687
No 112
>PRK13711 conjugal transfer protein TrbJ; Provisional
Probab=24.98 E-value=34 Score=15.00 Aligned_cols=10 Identities=50% Similarity=0.570 Sum_probs=4.7
Q ss_pred ECCCCCCCCC
Q ss_conf 5168643333
Q gi|254780369|r 152 IRAIAFPPAP 161 (318)
Q Consensus 152 vr~~sf~~~~ 161 (318)
+|.|.|-|+.
T Consensus 49 i~qglfypas 58 (113)
T PRK13711 49 IRQGLFYPAS 58 (113)
T ss_pred HHCCCCCCCC
T ss_conf 5134445798
No 113
>KOG4180 consensus
Probab=24.24 E-value=52 Score=13.88 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=18.8
Q ss_pred EEEEEEEEECCCCCCCHHHCCEEEECCCCCCCH
Q ss_conf 258854443145666700074564136777783
Q gi|254780369|r 183 NTRFIKEERTSLSPTDLSSAKIVISGGKSFGSM 215 (318)
Q Consensus 183 ~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~ 215 (318)
+..+.+......+.+.-....++|+-|-|-.++
T Consensus 241 rVS~y~i~idd~~~~KqKssgl~vctgTGstsw 273 (395)
T KOG4180 241 RVSYYEISIDDKDGVKQKSSGLVVCTGTGSTSW 273 (395)
T ss_pred CCEEEEEEECCCCCCCCCCCCEEEECCCCCCEE
T ss_conf 000689986376310034887068537885347
No 114
>TIGR02017 hutG_amidohyd N-formylglutamate amidohydrolase; InterPro: IPR010247 In some species, histidine is converted to via urocanate and then formimino-L-glutamate to glutamate in four steps, where the fourth step is conversion of N-formimino-L-glutamate to L-glutamate and formamide. In others, that pathway from formimino-L-glutamate may differ, with the next enzyme being formiminoglutamate hydrolase (HutF) yielding N-formyl-L-glutamate. This entry represents the enzyme N-formylglutamate deformylase, also called N-formylglutamate amidohydrolase, which then produces glutamate..
Probab=23.96 E-value=28 Score=15.60 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=21.6
Q ss_pred EECC-CCCHHHHHHHHHHHHCCCCEECCCEEE
Q ss_conf 4415-781034467888875177410132022
Q gi|254780369|r 92 IMAS-ANAMGKDILPRVAAMLDVMQVSEVIEI 122 (318)
Q Consensus 92 Vl~~-~t~~GrdlaprlAarL~~~~vsdvv~i 122 (318)
+.-| |...-+|| .||.+..+..++=||-+|
T Consensus 119 ~f~PYH~aL~~Ei-~RLra~hg~~vLyDaHSI 149 (269)
T TIGR02017 119 YFRPYHAALRAEI-ERLRAQHGYAVLYDAHSI 149 (269)
T ss_pred HCCCHHHHHHHHH-HHHHHHCCCEEEECCCCC
T ss_conf 2422689999999-998843580798716420
No 115
>PRK08226 short chain dehydrogenase; Provisional
Probab=23.77 E-value=28 Score=15.61 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=35.7
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCC-CCHHHHHHC
Q ss_conf 413677778335688999998763985974257886788-888895401
Q gi|254780369|r 206 ISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGF-APNDWQIGQ 253 (318)
Q Consensus 206 VsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw-~p~~~qIG~ 253 (318)
+..|| ++.+|+...++.-||.-...-+=++-=.||-|| +|+.-|||.
T Consensus 216 ~PlgR-~g~peeiA~~v~FLaSd~a~yiTG~~i~VDGG~tlp~~~~~~~ 263 (263)
T PRK08226 216 IPLRR-LADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGV 263 (263)
T ss_pred CCCCC-CCCHHHHHHHHHHHHCCHHCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 99999-7789999999999958363480488288588830783346898
No 116
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=22.92 E-value=46 Score=14.20 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=18.6
Q ss_pred CCCCHHHHHHCCCCEECCCEEEEEEECCHHHHHHHHCCCCEEEEEE
Q ss_conf 8888889540159754573899996167264555516898899976
Q gi|254780369|r 243 GFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSIN 288 (318)
Q Consensus 243 gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~~G~~~s~~IvAIN 288 (318)
.||||-+.=|-||+.| |+++.-++|+||
T Consensus 49 kGmPh~rf~G~TG~Vv------------------g~~g~ay~V~v~ 76 (98)
T COG2139 49 KGMPHPRFQGKTGTVV------------------GVRGRAYKVEVY 76 (98)
T ss_pred CCCCCCCCCCCCEEEE------------------ECCCCEEEEEEE
T ss_conf 6987753047630798------------------414877999996
No 117
>pfam03596 Cad Cadmium resistance transporter.
Probab=21.44 E-value=23 Score=16.08 Aligned_cols=26 Identities=19% Similarity=0.372 Sum_probs=21.1
Q ss_pred HHCCCCEECCCEEEEEEE-----CCHHHHHH
Q ss_conf 401597545738999961-----67264555
Q gi|254780369|r 251 IGQTGVTVSPELYIAAGI-----SGAIQHIS 276 (318)
Q Consensus 251 IG~tG~~v~P~lYia~GI-----SGa~qH~~ 276 (318)
+--=|+++-|=+||.+|+ ||++||+-
T Consensus 160 l~ryg~~l~p~VlIgLGi~Il~esgt~~~li 190 (192)
T pfam03596 160 LEKYSRWIVAIVYIGLGIYILVENGTFSALL 190 (192)
T ss_pred HHHHCCCHHHHHHHHCCEEEEEECCHHHHHH
T ss_conf 9983463476770530557889587899975
No 118
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=20.80 E-value=60 Score=13.44 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=63.2
Q ss_pred HHHCCEEEECCCCCCCHHHHHHHHHHHHHHC---CCEEEEEHHHHHCCCCCHHHHHHCCCCEECCCEEEEEEECCHHHHH
Q ss_conf 0007456413677778335688999998763---9859742578867888888954015975457389999616726455
Q gi|254780369|r 199 LSSAKIVISGGKSFGSMENFHKLLLPLAKKL---GAAIGATRDAVDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHI 275 (318)
Q Consensus 199 L~~A~iVVsgGRGi~~~enf~~l~~~LA~~L---gaavG~SRp~vD~gw~p~~~qIG~tG~~v~P~lYia~GISGa~qH~ 275 (318)
|.+|+.|.-.|.|. .. .+.++++-+| |-.+-+. -....|.-+....-.-++-|++-.||...++
T Consensus 138 i~~A~~I~i~G~G~----S~-~vA~~~~~kl~rlG~~~~~~--------~d~~~~~~~a~~l~~~Dv~i~iS~sG~t~e~ 204 (293)
T PRK11337 138 FYQARQRDLYGAGG----SN-AICADVQHKFLRIGVRCQAY--------PDAHIMMMSASLLQEGDVVLVVSHSGRTSDV 204 (293)
T ss_pred HHHCCCEEEEEECC----HH-HHHHHHHHHHHHCCCEEEEE--------CCHHHHHHHHHHCCCCCEEEEEECCCCCHHH
T ss_conf 98279708998572----69-99999999999859804764--------7778999999718999889998189998899
Q ss_pred HHH------CCCCEEEEEECCCCCCHHHCCCEEEECCHH
Q ss_conf 551------689889997665998831027645752389
Q gi|254780369|r 276 SGM------KDSKVIVSINTDENAPIFKISDYFIVGDIF 308 (318)
Q Consensus 276 ~G~------~~s~~IvAIN~D~~ApIf~~ad~giv~D~~ 308 (318)
.-+ ++.+ ||+|-..++.|+-+.|||-+.-...
T Consensus 205 i~~~~~Ak~~Ga~-vI~IT~~~~SpLa~~aD~vL~~~~~ 242 (293)
T PRK11337 205 KAAVELAKQNGAK-IICITHSYHSPIAKLADYIICSPAP 242 (293)
T ss_pred HHHHHHHHHCCCE-EEEECCCCCCHHHHHCCEEEECCCC
T ss_conf 9999999987994-9997699998468958998864887
No 119
>TIGR03010 sulf_tusC_dsrF sulfur relay protein TusC/DsrF. The three proteins TusB, TusC, and TusD form a heterohexamer responsible for a sulfur relay reaction. In large numbers of proteobacterial species, this complex acts on a Cys-derived persulfide moiety, delivered by the cysteine desulfurase IscS to TusA, then to TusBCD. The activated sulfur group is then transferred to TusE (DsrC), then by MnmA (TrmU) for modification of an anticodon nucleotide in tRNAs for Glu, Lys, and Gln. The sulfur relay complex TusBCD is also found, under the designation DsrEFH, in phototrophic and chemotrophic sulfur bacteria, such as Chromatium vinosum. In these organisms, it seems the primary purpose is related to sulfur flux, such as oxidation from sulfide to molecular sulfur to sulfate.
Probab=20.69 E-value=61 Score=13.43 Aligned_cols=56 Identities=14% Similarity=0.240 Sum_probs=35.2
Q ss_pred CEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHH----------------HHHHCCCCCCEEEEECCCHHHH
Q ss_conf 7587899999999987389347999818926888----------------9987078973999944810100
Q gi|254780369|r 17 ENLSEQTARIVTAAQKISHDIHVLVLGDNIENIA----------------QQAARIQGVTQVIVAQSTIFRH 72 (318)
Q Consensus 17 g~l~~~slEll~~A~~lg~~v~avv~G~~~~~~a----------------~~~~~~~Gad~V~~~~~~~~~~ 72 (318)
....+..|+++=++..+..++.++.+|+++-.+. -+++..|+++++|+.+.+.-++
T Consensus 13 s~~~rE~LD~aLa~aaf~q~vsv~F~~dGV~~L~~~Q~p~~i~~k~~~~~~~~L~lYdIe~vyv~~~SL~~r 84 (116)
T TIGR03010 13 TASGREGLDALLAASAFDEDIGVFFIDDGVLQLLKNQQPELILQKDYIATFKALPLYDIEELYVCAESLAER 84 (116)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEHHHHHHC
T ss_conf 778999999999998707974799952449886758996312564789998516426850799879999884
No 120
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=20.24 E-value=62 Score=13.37 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=79.2
Q ss_pred EEEEECCCHHHHHHH-------HHCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCE--EECCCCCHHHHHHHHHH
Q ss_conf 799981892688899-------870789739999448101000123224557874034560--44157810344678888
Q gi|254780369|r 38 HVLVLGDNIENIAQQ-------AARIQGVTQVIVAQSTIFRHKLAGPVSDFVVSIARDYKT--IMASANAMGKDILPRVA 108 (318)
Q Consensus 38 ~avv~G~~~~~~a~~-------~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~--Vl~~~t~~GrdlaprlA 108 (318)
+=+++|+-..+.|++ .++..|.++=+.+.+ +.|..+. +..+. +=.|..+ --.+...|.
T Consensus 32 ~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G--~~N~~AA----------~~aDVVil~vP~~~-~~~~l~~~~ 98 (233)
T TIGR01915 32 NEIIIGSRDKEKAEEAAAKALEELGDQGVDRDIKVEG--AENEEAA----------KRADVVILAVPFDH-VLKTLESIK 98 (233)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEC--CCCHHHH----------HHCCEEEEEECCHH-HHHHHHHHH
T ss_conf 5557704884569999999999997089513625754--8877887----------23897899842222-478999999
Q ss_pred HHCCC-CEECCCE-EEC----CCCEEEEEEECCCEEEEEE--ECC-CCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 75177-4101320-224----6872797410695268999--779-8427995168643333556666615621110244
Q gi|254780369|r 109 AMLDV-MQVSEVI-EII----SPKIFKRPSYTGNIIQTIE--TTD-TYQIITIRAIAFPPAPKAEKVASIHKISAEVLEK 179 (318)
Q Consensus 109 arL~~-~~vsdvv-~i~----~~~~~~rp~fgG~~~a~v~--~~~-~~~viTvr~~sf~~~~~~~~~~~v~~~~~~~~~~ 179 (318)
.+|.. -++-+|+ -|. +..+..++-.-|++-..++ .+. +..|+.- |. .++...+.
T Consensus 99 ~~L~~dK~Vis~~VPl~~~Ig~~~~~y~~P~eGSaA~~~a~~lpeqg~~VvaA----Fh------------N~~A~~L~- 161 (233)
T TIGR01915 99 DELEADKIVISPVVPLASAIGGKGLRYLPPEEGSAAELVAKLLPEQGSKVVAA----FH------------NISAAKLK- 161 (233)
T ss_pred HHHCCCCEEEECCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEHHH----HC------------CCCHHHCC-
T ss_conf 98518928996478750000244300268731028999998533267501021----21------------32445404-
Q ss_pred CCEEEEEEEEEECCCCCCCHHHCCEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHHHH
Q ss_conf 530258854443145666700074564136777783356889999987639859742578867888888954
Q gi|254780369|r 180 YISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQI 251 (318)
Q Consensus 180 ~~~~~~~i~~~~~~~~~v~L~~A~iVVsgGRGi~~~enf~~l~~~LA~~LgaavG~SRp~vD~gw~p~~~qI 251 (318)
+... . ++ ++|+.|.+ .++|.. +++.|||+.++ |=|| +|.|-+..+|||
T Consensus 162 --------D~~~---~--~~-D~D~LV~g----~de~A~-~~V~eLA~~I~----G~Ra-~d~G~LenA~~~ 209 (233)
T TIGR01915 162 --------DVVD---E--EV-DCDVLVCG----DDEEAK-KVVAELAEKID----GLRA-IDAGPLENARIV 209 (233)
T ss_pred --------CCCC---C--CC-CCCEEEEC----CCHHHH-HHHHHHHCCCC----CCCC-CCCCCCHHHHHH
T ss_conf --------4003---7--43-34536626----877789-99999840389----4324-126771457888
No 121
>PRK11178 uridine phosphorylase; Provisional
Probab=20.16 E-value=62 Score=13.36 Aligned_cols=13 Identities=8% Similarity=0.463 Sum_probs=4.8
Q ss_pred HHHHHCCCCEEEEE
Q ss_conf 55551689889997
Q gi|254780369|r 274 HISGMKDSKVIVSI 287 (318)
Q Consensus 274 H~~G~~~s~~IvAI 287 (318)
|+.|+| +-.|.+|
T Consensus 205 ~~~G~r-A~~v~~v 217 (251)
T PRK11178 205 ASQGLR-AGMVAGV 217 (251)
T ss_pred HHCCCC-EEEEEEE
T ss_conf 985997-9999999
Done!