HHSEARCH alignment of GI: 254780369 and SCOP domain: d1yc5a1

Alignment
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]}
Probab=96.25  E-value=0.0024  Score=38.49  Aligned_cols=57  Identities=18%  Similarity=0.203  Sum_probs=46.2

Q ss_pred             CEEEEEEECCHHHHHHHH-----CCCCEEEEEECCCCCCHHHCCCEEEECCHHHHHHHHHHCC
Q ss_conf             389999616726455551-----6898899976659988310276457523899999988609
Q gi|254780369|r  261 ELYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKNL  318 (318)
Q Consensus       261 ~lYia~GISGa~qH~~G~-----~~s~~IvAIN~D~~ApIf~~ad~giv~D~~~vlp~l~~~l  318 (318)
                      ++.|.+|-|.+++-..++     +....+|-||.+|- |.-..+|+.+-||.-|+||+|.++|
T Consensus       182 DlllviGTSl~V~p~~~l~~~a~~~g~~~i~IN~~~t-~~d~~~d~~i~g~~~e~l~~l~~~l  243 (245)
T d1yc5a1         182 SLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGET-PFDDIATLKYNMDVVEFARRVMEEG  243 (245)
T ss_dssp             SEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCC-TTGGGCSEEECSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCEEEECHHHHHHHHHHCCCEEEEECCCCC-CCCCCEEEEEECCHHHHHHHHHHHC
T ss_conf             8899979975991232106999976990999879999-9986302998088999999999973


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]