HHSEARCH alignment of GI: 254780369 and SCOP domain: d3clsd1

Alignment
>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]}
Probab=100.00  E-value=1.5e-35  Score=243.48  Aligned_cols=173  Identities=13%  Similarity=0.216  Sum_probs=152.1

Q ss_pred             EEEEEEEECCCEECHHHHHHHHHHHHH----CCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             489999802975878999999999873----8934799981892688899870789739999448101000123224557
Q gi|254780369|r    7 PVLLLADYNQENLSEQTARIVTAAQKI----SHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSDFV   82 (318)
Q Consensus         7 ~ilV~~E~~~g~l~~~slEll~~A~~l----g~~v~avv~G~~~~~~a~~~~~~~Gad~V~~~~~~~~~~~~~~~~a~~l   82 (318)
                      +||||+||+||+|++.|+|++++|++|    |.++.++++|.+.+..+.++.. ||+++|+..+++.+ +|+++.|+.++
T Consensus         2 kIlV~~E~~~g~l~~~slEll~~A~~la~~~g~~v~avv~G~~~~~~~~~l~~-~Ga~~v~~~~~~~~-~~~~~~~~~al   79 (192)
T d3clsd1           2 KILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSV-NGVDELVVVKGSSI-DFDPDVFEASV   79 (192)
T ss_dssp             EEEEECCEETTEECTHHHHHHHHHHHHCSSTTCEEEEEEESTTGGGGHHHHCB-TTCSEEEEEECSCS-SCCHHHHHHHH
T ss_pred             EEEEEEECCCCEECHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHH-CCCEEEEEECCCCC-CCCHHHHHHHH
T ss_conf             69999984599998999999999999888539938999968964777766531-38539999557311-15888887789


Q ss_pred             HHHCC--CCCEEECCCCCHHHHHHHHHHHHCCCCEECCCEEEC---CCCEEEEEEECCCEEEEEEECC-CCEEEEECCCC
Q ss_conf             87403--456044157810344678888751774101320224---6872797410695268999779-84279951686
Q gi|254780369|r   83 VSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII---SPKIFKRPSYTGNIIQTIETTD-TYQIITIRAIA  156 (318)
Q Consensus        83 ~~~~~--~~~~Vl~~~t~~GrdlaprlAarL~~~~vsdvv~i~---~~~~~~rp~fgG~~~a~v~~~~-~~~viTvr~~s  156 (318)
                      .++++  +|++||+++|++|||++||||+||++++++||++++   +..+++||+|+|++++++++.. .|+|+|+|||+
T Consensus        80 ~~~~~~~~p~~Vl~~~t~~grdlaprlAa~L~~~~vsdv~~l~~~~~~~~~~r~~~~G~~~a~~~~~~~~~~v~tvr~~~  159 (192)
T d3clsd1          80 SALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSV  159 (192)
T ss_dssp             HHHHHHHCCSEEEEESSHHHHTTHHHHHHHSSCEEEEEECEEEEETTEEEEEEEETTTTEEEEEECTTCSCEEEEECTTS
T ss_pred             HHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCEECCEEEEEECCCCEEEEEECCCCEEEEEEEECCCCCEEEEECCCC
T ss_conf             99996305542895377657799999987528673124079973498168997436880899999538997999989887


Q ss_pred             CCCCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf             43333556666615621110244530
Q gi|254780369|r  157 FPPAPKAEKVASIHKISAEVLEKYIS  182 (318)
Q Consensus       157 f~~~~~~~~~~~v~~~~~~~~~~~~~  182 (318)
                      |+|.+. .+++++++++.+..+....
T Consensus       160 f~~~~~-~~~~~v~~~~~~~~~~r~~  184 (192)
T d3clsd1         160 FKPLEG-AGSPVVSNVDAPSVQSRSQ  184 (192)
T ss_dssp             SCCCCS-BCCCEEEEEECCCCCCSEE
T ss_pred             CCCCCC-CCCCCEEEECCCCCCCCCE
T ss_conf             687767-8997479944788777627


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: ETFP subunits
domain: Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain
species: Methylophilus methylotrophus [TaxId: 17]