RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein
alpha subunit [Candidatus Liberibacter asiaticus str. psy62]
(318 letters)
>gnl|CDD|39157 KOG3954, KOG3954, KOG3954, Electron transfer flavoprotein, alpha
subunit [Energy production and conversion].
Length = 336
Score = 302 bits (774), Expect = 9e-83
Identities = 148/314 (47%), Positives = 209/314 (66%), Gaps = 6/314 (1%)
Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQG-VTQVIVAQ 66
L+LA++ +LS T +TAA+K+ D+ VLV G A+ A++ G V +V+VA+
Sbjct: 23 TLVLAEHQNGSLSPITLSTITAAKKLGGDVSVLVAGSKASKAAEALAKVVGDVKKVLVAE 82
Query: 67 STIFRHKLAGPVSDFVVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIIS 124
L ++ +++ + DY I+A ++A GK++LPRVAA LDV +S+VI I S
Sbjct: 83 DDKLEGNLPEQLAPLLLANQKQFDYSHILAGSSAFGKNVLPRVAAKLDVSPISDVIGIKS 142
Query: 125 PKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNT 184
F RP Y GN I T++ +++T+RA +FPPA + A+ A +K +S +
Sbjct: 143 ADTFVRPIYAGNAICTVKCKAPIKLLTVRATSFPPAATSGGSAA--TEVAPSDDKPVSLS 200
Query: 185 RFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGF 244
++ +E T DL+SAK+V+SGG+ S ENF KLL LA KLGAA+GATR AVDAG+
Sbjct: 201 EWVSQELTKSERPDLTSAKVVVSGGRGLKSGENF-KLLYDLADKLGAAVGATRAAVDAGY 259
Query: 245 APNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIV 304
PND QIGQTG V+PELYIA GISGAIQH++GMKDSKVIV+IN D +APIF+++DY +V
Sbjct: 260 VPNDLQIGQTGKIVAPELYIAVGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADYGLV 319
Query: 305 GDIFKILPEIEKNL 318
GD+FKI+PE+ + L
Sbjct: 320 GDLFKIVPELTEKL 333
>gnl|CDD|32208 COG2025, FixB, Electron transfer flavoprotein, alpha subunit
[Energy production and conversion].
Length = 313
Score = 280 bits (718), Expect = 3e-76
Identities = 138/319 (43%), Positives = 197/319 (61%), Gaps = 15/319 (4%)
Query: 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVA 65
M VL++A+++ LS + ++TAA+K+ D+ +V+G+ AA+ G +V+VA
Sbjct: 1 MKVLVVAEHDGGRLSPVSLELLTAARKLG-DVAAVVIGEGAA----AAAKAYGADKVLVA 55
Query: 66 QSTIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123
+ + L P +D +V +A+ YK ++ A GK++ PRVAA LDV +++V +
Sbjct: 56 EGPELANYLPEPYADALVDLAKKYKPDVVLLPATTNGKELAPRVAARLDVGLIADVTSLD 115
Query: 124 SPK--IFKRPSYTGNIIQTIETT-DTYQIITIRAIAFPPAPKA-EKVASIHKISAEVLEK 179
F RP Y GN I T+ + +IT+R F A A K+ A
Sbjct: 116 VGDGLTFTRPIYGGNAIATVISPSGRPAVITVRPGVFAAAAAALGGSVETEKVVAPANAI 175
Query: 180 YISNTRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDA 239
+ +T F ++ DL+ AKIV+SGG+ GS ENF KLL LA LGAA+GA+R A
Sbjct: 176 AVVSTGFSLKKSGR---VDLAEAKIVVSGGRGLGSKENF-KLLEELADVLGAAVGASRPA 231
Query: 240 VDAGFAPNDWQIGQTGVTVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKIS 299
VDAG+ PND Q+GQTG TV+P+LYIA GISGAIQH++GMKDSKVIV+IN D NAPIF+++
Sbjct: 232 VDAGWMPNDRQVGQTGKTVAPKLYIALGISGAIQHLAGMKDSKVIVAINKDPNAPIFQVA 291
Query: 300 DYFIVGDIFKILPEIEKNL 318
DY IVGD+FKI+P + + L
Sbjct: 292 DYGIVGDLFKIVPALIEAL 310
>gnl|CDD|144387 pfam00766, ETF_alpha, Electron transfer flavoprotein FAD-binding
domain. This domain found at the C-terminus of electron
transfer flavoprotein alpha chain and binds to FAD. The
fold consists of a five-stranded parallel beta sheet as
the core of the domain, flanked by alternating helices.
A small part of this domain is donated by the beta
chain.
Length = 86
Score = 138 bits (350), Expect = 2e-33
Identities = 56/85 (65%), Positives = 66/85 (77%), Gaps = 1/85 (1%)
Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVT 257
DLS AK+V+SGG+ GS ENF KLL LA LGA +GA+R AVDAG+ D Q+GQTG T
Sbjct: 3 DLSEAKVVVSGGRGLGSKENF-KLLEELADVLGAEVGASRPAVDAGWIDADRQVGQTGKT 61
Query: 258 VSPELYIAAGISGAIQHISGMKDSK 282
V P+LYIA GISGAIQH++GMKDS
Sbjct: 62 VRPKLYIAVGISGAIQHLAGMKDSD 86
>gnl|CDD|30170 cd01715, ETF_alpha, The electron transfer flavoprotein (ETF) serves
as a specific electron acceptor for various
mitochondrial dehydrogenases. ETF transfers electrons to
the main respiratory chain via ETF-ubiquinone
oxidoreductase. ETF is an heterodimer that consists of
an alpha and a beta subunit which binds one molecule of
FAD per dimer . A similar system also exists in some
bacteria. The homologous pair of proteins (FixA/FixB)
are essential for nitrogen fixation. The alpha subunit
of ETF is structurally related to the bacterial nitrogen
fixation protein fixB which could play a role in a redox
process and feed electrons to ferredoxin..
Length = 168
Score = 137 bits (346), Expect = 5e-33
Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 3/168 (1%)
Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67
VL+LA++ L E T VTAA+K+ ++ LV+G E +A A + G +V+VA+
Sbjct: 2 VLVLAEHRNGELRELTLEAVTAARKLGGEVTALVIGSGAEAVAA-ALKAYGADKVLVAED 60
Query: 68 TIFRHKLAGPVSDFVVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISP 125
H LA P + +V++A+ I+A A + GKD+ PRVAA LDV +S+V +
Sbjct: 61 PALAHYLAEPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTALEDD 120
Query: 126 KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKIS 173
F RP Y GN + T+++ D ++ T+R AFP A A + +
Sbjct: 121 LTFTRPIYAGNALATVKSPDRPKVATVRPGAFPAAAAGGGSAVVEAVD 168
>gnl|CDD|30172 cd01985, ETF, The electron transfer flavoprotein (ETF) serves as a
specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an alpha and a beta
subunit which binds one molecule of FAD per dimer . A
similar system also exists in some bacteria. The
homologous pair of proteins (FixA/FixB) are essential
for nitrogen fixation. The alpha subunit of ETF is
structurally related to the bacterial nitrogen fixation
protein fixB which could play a role in a redox process
and feed electrons to ferredoxin. The beta subunit
protein is distantly related to and forms a heterodimer
with the alpha subunit..
Length = 181
Score = 101 bits (253), Expect = 2e-22
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 13 DYNQENLSEQTARIVTAAQKIS---HDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTI 69
D + L+ V AA ++ ++ LV+G +A + A G +V++ +
Sbjct: 11 DTAELVLNPLDLEAVEAALRLKEYGGEVTALVIGPPAAEVALREALAMGADKVLLVEDPA 70
Query: 70 FRHKLAGPVSDFVVSIARDYKT--IMASANAMGKDILPRVAAMLDVMQVSEVIEIIS--- 124
+ + ++ + K I+A A ++GK + PRVAA+L V Q+S+V ++
Sbjct: 71 LAGYDPEATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTKLEIDGG 130
Query: 125 PKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVAS 168
RP Y GN ++T+E+ D +IT+R AF P +
Sbjct: 131 DLTVTRPIYAGNGLETVESPDLPAVITVRPGAFEPRYPSGPGKK 174
>gnl|CDD|144557 pfam01012, ETF, Electron transfer flavoprotein domain. This family
includes the homologous domain shared between the alpha
and beta subunits of the electron transfer flavoprotein.
Length = 161
Score = 99.6 bits (249), Expect = 1e-21
Identities = 37/161 (22%), Positives = 76/161 (47%), Gaps = 10/161 (6%)
Query: 8 VLLLADYNQENLSEQTARIVTAAQKI----SHDIHVLVLGDNIENIAQQAARIQGVTQVI 63
VL++A++ L+ + AA+++ ++ +V+G + A+ G +V+
Sbjct: 2 VLVVAEHGNGKLNPVDLEALEAARQLAEALGGEVTAVVVG-PVPAAAEALLAAMGADKVL 60
Query: 64 VAQSTIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKDILPRVAAMLDVMQVSEVIE 121
V + A + + ++ + ++A A ++GKD+ PR+AA+L +++V
Sbjct: 61 VVEDPALAGYDAEAYAAALAALIKKEGPDLVLAGATSIGKDLAPRLAALLGAPLITDVTA 120
Query: 122 IISPK---IFKRPSYTGNIIQTIETTDTYQIITIRAIAFPP 159
+ RP Y GN I T++ D ++T+R AF P
Sbjct: 121 LEVEGGKLTVTRPIYGGNAIATVKLPDPPAVLTVRPGAFEP 161
>gnl|CDD|31353 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 29.4 bits (66), Expect = 1.3
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 116 VSEVIEIISPKIFKRPSYTGNIIQTIETTDTYQIITI 152
V + I I+SPK P T N I+ I TTD QII +
Sbjct: 27 VGQKISIVSPK----PQTTRNRIRGIVTTDNAQIIFV 59
>gnl|CDD|144218 pfam00547, Urease_gamma, Urease, gamma subunit. Urease is a
nickel-binding enzyme that catalyses the hydrolysis of
urea to carbon dioxide and ammonia.
Length = 99
Score = 29.0 bits (66), Expect = 1.8
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 78 VSDFVVSIARDYKT---IMASANAM--GKDILPRVAAMLDVMQV 116
+SD ++ ARD KT +M+ + D++P V M+ +QV
Sbjct: 39 ISDEILEGARDGKTVAELMSEGRTVLTRDDVMPGVPEMIPEVQV 82
>gnl|CDD|63883 cd00390, Urease_gamma, Urease gamma-subunit; Urease is a
nickel-dependent metalloenzyme that catalyzes the
hydrolysis of urea to form ammonia and carbon dioxide.
Nickel-dependent ureases are found in bacteria, archaea,
fungi and plants. Their primary role is to allow the use
of external and internally-generated urea as a nitrogen
source. The enzyme consists of three subunits, alpha,
beta and gamma, which can exist as separate proteins or
can be fused on a single protein chain. The
alpha-beta-gamma heterotrimer forms multimers, mainly
trimers. The large alpha subunit is the catalytic domain
containing an active site with a bi-nickel center
complexed by a carbamylated lysine. The beta and gamma
subunits play a role in subunit association to form the
higher order trimers..
Length = 96
Score = 28.6 bits (64), Expect = 2.2
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 78 VSDFVVSIARDYKT---IMASANAM--GKDILPRVAAMLDVMQV 116
++D ++ ARD K+ +M+ + D++ V ML +QV
Sbjct: 36 IADEILEGARDGKSVAELMSLGKTVLTRDDVMEGVPEMLHDVQV 79
>gnl|CDD|35486 KOG0265, KOG0265, KOG0265, U5 snRNP-specific protein-like factor
and related proteins [RNA processing and modification].
Length = 338
Score = 28.0 bits (62), Expect = 4.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 267 GISGAIQHISGMKDSKVIVSINTD 290
G SGA+ + GM+D I+S TD
Sbjct: 88 GHSGAVMELHGMRDGSHILSCGTD 111
>gnl|CDD|36179 KOG0961, KOG0961, KOG0961, Predicted Zn2+-dependent endopeptidase,
insulinase superfamily [Posttranslational modification,
protein turnover, chaperones].
Length = 1022
Score = 26.9 bits (59), Expect = 7.9
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 110 MLDVMQ--VSEVIEIIS--PKIFKRPSYTGNIIQTIE----------TTDTYQIITIRAI 155
+L++M +E++E +S P F RP N + I+ T D + A
Sbjct: 224 LLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGAVEVAW 283
Query: 156 AFPPAPKAEKVASIHKISAEVLEKYISNT 184
E +++H VL Y+SN+
Sbjct: 284 FGHSPSDLETHSALH-----VLFDYLSNS 307
>gnl|CDD|114185 pfam05445, Pox_ser-thr_kin, Poxvirus serine/threonine protein
kinase.
Length = 434
Score = 26.6 bits (59), Expect = 8.9
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 275 ISGMKDSKVIVSINTDENAPIFKISD-YFIVGDIFKILPEIEKN 317
++G+ + K+ S+ ++N D +F +FK PEIEK+
Sbjct: 346 VAGIINKKIKNSLKVEQNW----YYDFHFFKHTLFKNYPEIEKD 385
>gnl|CDD|30633 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 26.8 bits (59), Expect = 8.9
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 25 RIVTAAQKISHDIHVLVLGDNIENIAQQAARI--QGVTQVIVAQ 66
V+ I D H LGD +E+IA++ A I G VI Q
Sbjct: 159 PDVSVITSIGLD-HTAFLGDTLESIAREKAGIIKAGKPAVIGEQ 201
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.133 0.367
Gapped
Lambda K H
0.267 0.0685 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,601,047
Number of extensions: 186576
Number of successful extensions: 565
Number of sequences better than 10.0: 1
Number of HSP's gapped: 551
Number of HSP's successfully gapped: 20
Length of query: 318
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,232,491
Effective search space: 948077984
Effective search space used: 948077984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)