RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein
alpha subunit [Candidatus Liberibacter asiaticus str. psy62]
         (318 letters)



>1efv_A Electron transfer flavoprotein; electron transport, glutaric
           acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
           (A:1-183)
          Length = 183

 Score =  108 bits (271), Expect = 1e-24
 Identities = 51/175 (29%), Positives = 98/175 (56%), Gaps = 2/175 (1%)

Query: 6   MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVA 65
              L++A++  ++L+  T   +TAA ++  ++  LV G   + +AQ   ++ G+ +V+VA
Sbjct: 2   QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVA 61

Query: 66  QSTIFRHKLAGPVSDFVVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123
           Q  +++  L   ++  +++  +  +Y  I A A+A GK++LPRVAA L+V  +S++I I 
Sbjct: 62  QHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIK 121

Query: 124 SPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLE 178
           SP  F R  Y GN + T++  +  ++ ++R  +F  A  +   AS  K S+    
Sbjct: 122 SPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPV 176


>1efp_A ETF, protein (electron transfer flavoprotein); electron
           transport, glutaric acidemia type II; HET: FAD AMP;
           2.60A {Paracoccus denitrificans} (A:1-179)
          Length = 179

 Score =  102 bits (256), Expect = 5e-23
 Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 4/182 (2%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67
           VLLL +     L+        AA K   D+ VL  G + +  A++AA+I GV +V+VA+ 
Sbjct: 2   VLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAED 61

Query: 68  TIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKI 127
            ++ H+LA P +  +V +A DY  I A A    K+++PRVAA+LDVM +S+V  I+    
Sbjct: 62  ALYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADT 121

Query: 128 FKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTRFI 187
           F+RP Y GN IQ +++ D  ++ TIR  +F  A +    A + + +A         + ++
Sbjct: 122 FERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGT-APVTETAAAADP---GLSSWV 177

Query: 188 KE 189
            +
Sbjct: 178 AD 179


>1o97_D Electron transferring flavoprotein alpha-subunit; FAD
           binding; HET: AMP FAD; 1.6A {Methylophilus
           methylotrophus} (D:1-188)
          Length = 188

 Score = 94.3 bits (234), Expect = 2e-20
 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 9/179 (5%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQVI 63
           +L++A++ + +L   +  ++ AA  +       + V V+G   +      +       V+
Sbjct: 3   ILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVV 62

Query: 64  VAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123
           V  S+I         S   +  A +   ++   +         +A+       ++V  + 
Sbjct: 63  VKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVE 122

Query: 124 SPK---IFKRPSYTGNIIQTIETTDTY-QIITIRAIAFPPAPKAEKVASIHKISAEVLE 178
                 +  R  Y   +   ++       ++TIR   F P   A     +  + A  ++
Sbjct: 123 YQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGS-PVVSNVDAPSVQ 180


>1efv_A Electron transfer flavoprotein; electron transport, glutaric
           acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
           (A:184-315)
          Length = 132

 Score = 87.8 bits (217), Expect = 2e-18
 Identities = 76/121 (62%), Positives = 97/121 (80%), Gaps = 1/121 (0%)

Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVT 257
           +L+ AK+V+SGG+   S ENF KLL  LA +L AA+GA+R AVDAGF PND Q+GQTG  
Sbjct: 10  ELTGAKVVVSGGRGLKSGENF-KLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKI 68

Query: 258 VSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKN 317
           V+PELYIA GISGAIQH++GMKDSK IV+IN D  APIF+++DY IV D+FK++PE+ + 
Sbjct: 69  VAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEI 128

Query: 318 L 318
           L
Sbjct: 129 L 129


>1efp_A ETF, protein (electron transfer flavoprotein); electron
           transport, glutaric acidemia type II; HET: FAD AMP;
           2.60A {Paracoccus denitrificans} (A:180-307)
          Length = 128

 Score = 87.4 bits (216), Expect = 2e-18
 Identities = 76/121 (62%), Positives = 101/121 (83%), Gaps = 1/121 (0%)

Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVT 257
           +L+SA+ V+SGG+  GS E+F  ++  LA KLGAA+GA+R AVD+G+APNDWQ+GQTG  
Sbjct: 9   ELTSARRVVSGGRGLGSKESF-AIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKV 67

Query: 258 VSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKN 317
           V+PELY+A GISGAIQH++GMKDSKVIV+IN DE APIF+I+DY +VGD+F ++PE+   
Sbjct: 68  VAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGK 127

Query: 318 L 318
           L
Sbjct: 128 L 128


>1o97_D Electron transferring flavoprotein alpha-subunit; FAD
           binding; HET: AMP FAD; 1.6A {Methylophilus
           methylotrophus} (D:189-320)
          Length = 132

 Score = 82.7 bits (204), Expect = 6e-17
 Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQT-GV 256
           D+++   ++S G+  G   N  +    LA + GA +  +R   DAG+ P   Q+GQ+  V
Sbjct: 10  DITTVDFIMSIGRGIGEETNV-EQFRELADEAGATLCCSRPIADAGWLPKSRQVGQSGKV 68

Query: 257 TVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEK 316
             S +LY+A GISG+IQH++GMK    I+++NTD  A IF I+ Y IV DIF I  E++ 
Sbjct: 69  VGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKA 128

Query: 317 NL 318
            L
Sbjct: 129 QL 130


>3ih5_A Electron transfer flavoprotein alpha-subunit;
           alpha-beta-alpha sandwich, structural genomics, PSI-2,
           protein structure initiative; 2.60A {Bacteroides
           thetaiotaomicron} (A:1-122,A:163-217)
          Length = 177

 Score = 76.4 bits (188), Expect = 5e-15
 Identities = 23/146 (15%), Positives = 64/146 (43%), Gaps = 15/146 (10%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQVI 63
           + +  +  +  +++ +  ++T  + ++      +  +V G  ++ I +Q     GV ++ 
Sbjct: 6   LFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILP-YGVDKLH 64

Query: 64  VAQSTIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKDILPRVAAMLDVMQVSEV-- 119
           V  +       + P +  +V++ ++ +    +  A  +G+D+ PRV++ L     ++   
Sbjct: 65  VFDAEGLYPYTSLPHTSILVNLFKEEQPQICLXGATVIGRDLGPRVSSALTSGLTADCHR 124

Query: 120 ------IEIISPKIFKRPSYTGNIIQ 139
                  E +  K    P+Y G +I+
Sbjct: 125 PQXATVREGVXKKEIVSPAYQGEVIR 150


>3fet_A Electron transfer flavoprotein subunit alpha related
           protein; alpha-beta-alpha sandwich, structural genomics,
           PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} (A:)
          Length = 166

 Score = 75.2 bits (185), Expect = 1e-14
 Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 22/157 (14%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67
            L ++D           ++ T       D   +++G+         A+  G   +  A+ 
Sbjct: 6   FLTVSDDX-----NFLRQVNTLVAGKG-DXDSVIIGEG-------DAKGLGSKVLYRAKK 52

Query: 68  TIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPK- 126
                     VS+ ++ IA +Y  I   +  +G++I   ++        +E+  +     
Sbjct: 53  ----GTPFDAVSEGILKIAGNYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFNGQ 108

Query: 127 --IFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAP 161
               KR  Y G  +   E+    +I+T+         
Sbjct: 109 KAHTKRFFYGGKTVIEEESDA--RILTVAPGVIEAKD 143


>1efp_B ETF, protein (electron transfer flavoprotein); electron
           transport, glutaric acidemia type II; HET: FAD AMP;
           2.60A {Paracoccus denitrificans} (B:1-223)
          Length = 223

 Score = 71.6 bits (175), Expect = 1e-13
 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 24/192 (12%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKIS-----HDIHVLVLGDNIENIAQQAARIQGVTQV 62
             +     + +++      V  A ++       +I  + +G        + A   G  + 
Sbjct: 24  SGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGADRA 83

Query: 63  IVAQSTIFRHKLAGPVSDFVVSIA----RDYKTIMASANAMGKD---ILPRVAAMLDVMQ 115
           I+  +     +   P++   +  A       + I+A   A+  D       +AA+L   Q
Sbjct: 84  ILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQ 143

Query: 116 VSEVIEIIS---PKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAP------KAEKV 166
            +   ++          R    G     +       ++T       P           K 
Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLP---AVVTADLRLNEPRYASLPNIMKAKK 200

Query: 167 ASIHKISAEVLE 178
             + + +A    
Sbjct: 201 KPLDEKTAADYG 212


>1o97_C Electron transferring flavoprotein beta-subunit; FAD
           binding; HET: AMP FAD; 1.6A {Methylophilus
           methylotrophus} (C:1-228)
          Length = 228

 Score = 70.4 bits (172), Expect = 3e-13
 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 32/217 (14%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENI--AQQAARIQGVTQ 61
           + +  D+   +L+E     +  A KI      D+ V+V+    + +  + +    +G  +
Sbjct: 24  MDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADR 83

Query: 62  VIVAQSTIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKD---ILPRVAAMLDVMQV 116
            +           A  V   +  + +      + A   +  +        VA+ L+    
Sbjct: 84  AVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHA 143

Query: 117 SEVIEIISP-----KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHK 171
           + V ++         + +R    G  +Q +E      ++TI+     P       AS+  
Sbjct: 144 AVVADLQYKPGDNKAVIRRELEGGM-LQEVEINCP-AVLTIQLGINKPRY-----ASLRG 196

Query: 172 ISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISG 208
           I                 E  SL+   LS+  +  + 
Sbjct: 197 IKQ---------AATKPIEEVSLADIGLSANDVGAAQ 224


>1efv_B Electron transfer flavoprotein; electron transport, glutaric
           acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens}
           (B:1-226)
          Length = 226

 Score = 68.9 bits (168), Expect = 9e-13
 Identities = 24/192 (12%), Positives = 51/192 (26%), Gaps = 24/192 (12%)

Query: 8   VLLLADYNQENLSEQTARIVTAAQKIS-----HDIHVLVLGDNIENIAQQAARIQGVTQV 62
             ++ D  + +++      V  A ++       ++  +  G        + A   G  + 
Sbjct: 27  TGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRG 86

Query: 63  IVAQSTIFRHKLAGPVSDFVVSIA----RDYKTIMASANAMGKD---ILPRVAAMLDVMQ 115
           I  +      +  GP+    V            ++    A+  D        A  LD  Q
Sbjct: 87  IHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQ 146

Query: 116 VSEVIEI---ISPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAP------KAEKV 166
            +   ++         +R    G     ++      ++T       P           K 
Sbjct: 147 GTFASQVTLEGDKLKVEREIDGGLETLRLKLP---AVVTADLRLNEPRYATLPNIMKAKK 203

Query: 167 ASIHKISAEVLE 178
             I  I    L 
Sbjct: 204 KKIEVIKPGDLG 215


>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
           membrane-associated flavoprotein dehydrogenase,
           interactions with lipids cell membrane; HET: TDP FAD;
           2.50A {Escherichia coli} PDB: 3ey9_A* (A:175-354)
          Length = 180

 Score = 35.9 bits (82), Expect = 0.007
 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 16/131 (12%)

Query: 199 LSSAK---IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTG 255
           L  +    ++   G +       HK L+  A K+ A I       +     N + +G TG
Sbjct: 24  LRYSSNIALMCGSGCA-----GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTG 78

Query: 256 VTVSPELYIAA-------GISGAIQHISGMKDSKVIVSINTD-ENAPIFKISDYFIVGDI 307
           +      +           +     + +       I+ I+ +  +       D  +VGDI
Sbjct: 79  LIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDI 138

Query: 308 FKILPEIEKNL 318
              L  +   +
Sbjct: 139 KSTLRALLPLV 149


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 29.7 bits (67), Expect = 0.54
 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 8/31 (25%)

Query: 109 AMLDVMQVSEVIEIISPKIFKRPSYTGNIIQ 139
           ++ DVM +  ++E+    +F    Y G  +Q
Sbjct: 1   SLADVMSIESLVEV----VF----YRGMTMQ 23


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 29.7 bits (66), Expect = 0.55
 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 18/103 (17%)

Query: 21  EQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSD 80
           E   +I+    ++     V       +         +   Q+++   T         V D
Sbjct: 200 ELARQIMDVVTEMGKYTEVKTAFGIKD---SVPKGAKIDAQIVIG--TPGT------VMD 248

Query: 81  FVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123
            +    +  +           D       MLD   + +    I
Sbjct: 249 LM----KRRQLDARDIKVFVLDEADN---MLDQQGLGDQSMRI 284


>1m2k_A Silent information regulator 2; protein-ligand complex, gene
           regulation; HET: APR; 1.47A {Archaeoglobus fulgidus}
           (A:)
          Length = 249

 Score = 29.1 bits (64), Expect = 0.73
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 262 LYIAAGISGAIQHISGM----KDSKV-IVSINTDENAPIFKISDYFIVGDIFKILPEIEK 316
           + I AG S  +Q  + +    K     I+ IN DE  P+  I+DY + G   +++ E+ +
Sbjct: 180 VIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDE-TPLTPIADYSLRGKAGEVMDELVR 238

Query: 317 NL 318
           ++
Sbjct: 239 HV 240


>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2
           homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli}
           (A:)
          Length = 235

 Score = 28.2 bits (62), Expect = 1.5
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 261 ELYIAAGISG----AIQHISGMKDSKV-IVSINTDENAPIFKISDYFIVGDIFKILPEIE 315
           +++IA G SG    A   +   K      V +N +  + +         G   +++PE  
Sbjct: 169 DIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEP-SQVGNEFAEKYYGPASQVVPEFV 227

Query: 316 KNL 318
           + L
Sbjct: 228 EKL 230


>3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold,
           Zn-binding domain, structural genomics, structural
           genomics consortium, SGC, ADP-ribosylation; HET: APR;
           2.00A {Homo sapiens} (A:)
          Length = 318

 Score = 27.9 bits (61), Expect = 2.0
 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 262 LYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEK 316
           L I  G S  I+    +     +    +V +N        + +D  I G + +++  + K
Sbjct: 209 LSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQP-TKHDRHADLRIHGYVDEVMTRLMK 267

Query: 317 NL 318
           +L
Sbjct: 268 HL 269


>2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1,
           ethanolamine ammonia lyase large subunit (EUTB),
           structural genomics; HET: MSE; 2.15A {Listeria
           monocytogenes str} (A:)
          Length = 455

 Score = 27.7 bits (62), Expect = 2.1
 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%)

Query: 69  IFRHKLAGPVSDFVVSIARDYKTIMASANAM--GKDILPRVAA 109
           I +  L G    F     +    ++A AN    G D L  VAA
Sbjct: 3   ILKTNLFGHTYQF-----KSITDVLAKANEEKSG-DRLAGVAA 39


>1nvm_B Acetaldehyde dehydrogenase (acylating),
           4-hydroxy-2-oxovalerate aldolase; sequestered tunnel,
           substrate channeling, bifunctional enzyme; HET: NAD;
           1.70A {Pseudomonas SP} (B:131-284)
          Length = 154

 Score = 27.1 bits (60), Expect = 3.0
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 269 SGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGD 306
           S AI+ I G    K I+ +N  E   I + + Y +   
Sbjct: 50  SKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAA 87


>4ubp_A Protein (urease (chain A)); nickel, acetohydroxamic acid,
           metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii} (A:)
          Length = 100

 Score = 27.3 bits (61), Expect = 3.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 78  VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116
           ++ F++  ARD KT +A     GK +L R      V  M+D +Q 
Sbjct: 39  ITSFIMEGARDGKT-VAMLMEEGKHVLTRDDVMEGVPEMIDDIQA 82


>2fvh_A Urease gamma subunit; protein: UREA homolog, structural
           genomics, PSI, protein structure initiative; 1.80A
           {Mycobacterium tuberculosis} (A:)
          Length = 120

 Score = 27.0 bits (60), Expect = 3.2
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%)

Query: 78  VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116
           ++D ++  ARD +T +A   A G+++L R      V  ML  +QV
Sbjct: 59  IADHILEGARDGRT-VAELMASGREVLGRDDVMEGVPEMLAEVQV 102


>3iar_A Adenosine deaminase; purine metabolism, structural genomics,
           structural genomics consortium, SGC, acetylation,
           disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB:
           2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A*
           1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A*
           1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ...
           (A:1-60,A:240-367)
          Length = 188

 Score = 26.8 bits (59), Expect = 3.7
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 23/102 (22%)

Query: 213 GSMENFHKLLLPLAKKLGAAIGA-TRDAVDAGFAPND---------------WQI---GQ 253
           GS++   + +L   ++ G A+ A T + +      +                +       
Sbjct: 17  GSIK--PETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPDFLALEDQALYNRLRQEN 74

Query: 254 TGVTVSPE--LYIAAGISGAIQHISGMKDSKVIVSINTDENA 293
               + P       A        +  +K+ +   S+NTD+  
Sbjct: 75  MHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPL 116


>3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1
          protein, flexible fitting; 8.90A {Thermomyces
          lanuginosus} PDB: 1s1i_H (H:80-179)
          Length = 100

 Score = 26.7 bits (59), Expect = 4.3
 Identities = 9/36 (25%), Positives = 22/36 (61%)

Query: 27 VTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQV 62
          VT     +    +++ G+++E+++Q AA +Q + +V
Sbjct: 48 VTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRV 83


>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S
          ribosomal subunit, ribosomal protein/RNA complex; 8.70A
          {Canis familiaris} (e:87-192)
          Length = 106

 Score = 26.6 bits (59), Expect = 4.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 27 VTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQV 62
          V  +   +    +++ G++IE ++  AA IQ  T V
Sbjct: 46 VACSVSQAQKDELILEGNDIELVSNSAALIQQATTV 81


>1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic
           acid; HET: KCX; 3.0A {Helicobacter pylori} (A:1-112)
          Length = 112

 Score = 26.2 bits (58), Expect = 5.3
 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%)

Query: 78  VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116
           +S  ++  AR  K   A     G+ +L        VA+M+  + +
Sbjct: 39  ISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGI 83


>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron
           tomography, contractIle protein/transport protein
           complex; 24.00A {Gallus gallus} (A:698-753)
          Length = 56

 Score = 26.2 bits (58), Expect = 5.6
 Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 220 KLLLPLAKKLGAAIGATRDAVDA-GFAPNDWQIGQTGV 256
           ++L+     L       ++ ++      + +Q G+T +
Sbjct: 15  RVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKI 52


>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V,
           chicken, molecular motor, ATPase, ELC, IQ motif, muscle
           protein, ATP-binding; HET: ADP; 2A {Gallus gallus}
           (A:698-753)
          Length = 56

 Score = 26.2 bits (58), Expect = 5.6
 Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 220 KLLLPLAKKLGAAIGATRDAVDA-GFAPNDWQIGQTGV 256
           ++L+     L       ++ ++      + +Q G+T +
Sbjct: 15  RVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKI 52


>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein
          complex, RNA-RNA complex, protein-RNA complex, peptidyl
          transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
          2.20A {Haloarcula marismortui} (E:80-178)
          Length = 99

 Score = 26.3 bits (58), Expect = 6.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 39 VLVLGDNIENIAQQAARIQGVTQV 62
          + V G +IE + Q AA I+ +T++
Sbjct: 53 LTVSGPDIEAVGQTAADIEQLTRI 76


>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea,
          hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum
          pernix} (A:167-309)
          Length = 143

 Score = 26.1 bits (57), Expect = 6.3
 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 26 IVTAAQKISHDIHVLVLGD-NIENIAQQAARIQGVTQVIVAQSTIFRHKLA 75
          +  AA+ +    +V ++G   + +IA Q  ++     VI       + KLA
Sbjct: 11 VKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA 61


>2z8u_A Tata-box-binding protein; transcription, DNA-binding
           protein, transcription factor, transcription regulation;
           1.90A {Methanococcus jannaschii} (A:)
          Length = 188

 Score = 25.7 bits (56), Expect = 7.8
 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%)

Query: 126 KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTR 185
           KI K     G  +          ++    +   P    + +A + + +    E++     
Sbjct: 86  KIIKELKDAGIDVIENPEIKIQNMVATADLGIEP--NLDDIALMVEGTEYEPEQF--PGL 141

Query: 186 FIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKL 229
             + +   +      S K+VI+G KS    +   K +L   K++
Sbjct: 142 VYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEV 185


>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP),
           thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD
           TDP 1PE; 2.70A {Escherichia coli} (A:205-389,A:582-616)
          Length = 220

 Score = 25.9 bits (56), Expect = 8.2
 Identities = 20/138 (14%), Positives = 35/138 (25%), Gaps = 22/138 (15%)

Query: 199 LSSAK---IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTG 255
           L  A+   IV  GG       +   LL   A+     +  T          ++   G  G
Sbjct: 19  LIQAERPVIVAGGG---VINADAAALLQQFAELTSVPVIPTLXGWGCIPDDHELXAGXVG 75

Query: 256 VTVSPELYIAAGISGA---------------IQHISGMKDSKVIVSINTDENAPIFKISD 300
           +  +   Y  A +  +                      +  K++               D
Sbjct: 76  LQTAHR-YGNATLLASDXVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPD 134

Query: 301 YFIVGDIFKILPEIEKNL 318
             IV D    L  + +  
Sbjct: 135 LGIVSDAKAALTLLVEVA 152


>3lm2_A Putative kinase; structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative,
           PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium
           tumefaciens} (A:100-226)
          Length = 127

 Score = 25.5 bits (56), Expect = 9.8
 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 14/86 (16%)

Query: 163 AEKVASIHKISAEVLEKYISN-TRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKL 221
            E   S      +   K+       ++    +L P      ++VI GG          + 
Sbjct: 50  YEHYVSEAYREKKGNAKWQKRVQDVVERLSAALEP-----DEVVIGGGNV-----ERLEN 99

Query: 222 LLPLAKKLG---AAIGATRDAVDAGF 244
           L P  ++     A  G  R   +A  
Sbjct: 100 LPPKCRRGDNAXAFEGGFRLWKNADL 125


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0723    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,247,445
Number of extensions: 96574
Number of successful extensions: 351
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 35
Length of query: 318
Length of database: 4,956,049
Length adjustment: 88
Effective length of query: 230
Effective length of database: 1,981,209
Effective search space: 455678070
Effective search space used: 455678070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)