RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780369|ref|YP_003064782.1| Electron transfer flavoprotein alpha subunit [Candidatus Liberibacter asiaticus str. psy62] (318 letters) >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:1-183) Length = 183 Score = 108 bits (271), Expect = 1e-24 Identities = 51/175 (29%), Positives = 98/175 (56%), Gaps = 2/175 (1%) Query: 6 MPVLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVA 65 L++A++ ++L+ T +TAA ++ ++ LV G + +AQ ++ G+ +V+VA Sbjct: 2 QSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVA 61 Query: 66 QSTIFRHKLAGPVSDFVVSIAR--DYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123 Q +++ L ++ +++ + +Y I A A+A GK++LPRVAA L+V +S++I I Sbjct: 62 QHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIK 121 Query: 124 SPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLE 178 SP F R Y GN + T++ + ++ ++R +F A + AS K S+ Sbjct: 122 SPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPV 176 >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} (A:1-179) Length = 179 Score = 102 bits (256), Expect = 5e-23 Identities = 61/182 (33%), Positives = 100/182 (54%), Gaps = 4/182 (2%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67 VLLL + L+ AA K D+ VL G + + A++AA+I GV +V+VA+ Sbjct: 2 VLLLGEVTNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAED 61 Query: 68 TIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPKI 127 ++ H+LA P + +V +A DY I A A K+++PRVAA+LDVM +S+V I+ Sbjct: 62 ALYGHRLAEPTAALIVGLAGDYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADT 121 Query: 128 FKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTRFI 187 F+RP Y GN IQ +++ D ++ TIR +F A + A + + +A + ++ Sbjct: 122 FERPIYAGNAIQVVKSKDAKKVFTIRTASFDAAGEGGT-APVTETAAAADP---GLSSWV 177 Query: 188 KE 189 + Sbjct: 178 AD 179 >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} (D:1-188) Length = 188 Score = 94.3 bits (234), Expect = 2e-20 Identities = 25/179 (13%), Positives = 62/179 (34%), Gaps = 9/179 (5%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQVI 63 +L++A++ + +L + ++ AA + + V V+G + + V+ Sbjct: 3 ILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVV 62 Query: 64 VAQSTIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123 V S+I S + A + ++ + +A+ ++V + Sbjct: 63 VKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVE 122 Query: 124 SPK---IFKRPSYTGNIIQTIETTDTY-QIITIRAIAFPPAPKAEKVASIHKISAEVLE 178 + R Y + ++ ++TIR F P A + + A ++ Sbjct: 123 YQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEGAGS-PVVSNVDAPSVQ 180 >1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (A:184-315) Length = 132 Score = 87.8 bits (217), Expect = 2e-18 Identities = 76/121 (62%), Positives = 97/121 (80%), Gaps = 1/121 (0%) Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVT 257 +L+ AK+V+SGG+ S ENF KLL LA +L AA+GA+R AVDAGF PND Q+GQTG Sbjct: 10 ELTGAKVVVSGGRGLKSGENF-KLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKI 68 Query: 258 VSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKN 317 V+PELYIA GISGAIQH++GMKDSK IV+IN D APIF+++DY IV D+FK++PE+ + Sbjct: 69 VAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVPEMTEI 128 Query: 318 L 318 L Sbjct: 129 L 129 >1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} (A:180-307) Length = 128 Score = 87.4 bits (216), Expect = 2e-18 Identities = 76/121 (62%), Positives = 101/121 (83%), Gaps = 1/121 (0%) Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTGVT 257 +L+SA+ V+SGG+ GS E+F ++ LA KLGAA+GA+R AVD+G+APNDWQ+GQTG Sbjct: 9 ELTSARRVVSGGRGLGSKESF-AIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKV 67 Query: 258 VSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEKN 317 V+PELY+A GISGAIQH++GMKDSKVIV+IN DE APIF+I+DY +VGD+F ++PE+ Sbjct: 68 VAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPELTGK 127 Query: 318 L 318 L Sbjct: 128 L 128 >1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} (D:189-320) Length = 132 Score = 82.7 bits (204), Expect = 6e-17 Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%) Query: 198 DLSSAKIVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQT-GV 256 D+++ ++S G+ G N + LA + GA + +R DAG+ P Q+GQ+ V Sbjct: 10 DITTVDFIMSIGRGIGEETNV-EQFRELADEAGATLCCSRPIADAGWLPKSRQVGQSGKV 68 Query: 257 TVSPELYIAAGISGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEK 316 S +LY+A GISG+IQH++GMK I+++NTD A IF I+ Y IV DIF I E++ Sbjct: 69 VGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDIEEELKA 128 Query: 317 NL 318 L Sbjct: 129 QL 130 >3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron} (A:1-122,A:163-217) Length = 177 Score = 76.4 bits (188), Expect = 5e-15 Identities = 23/146 (15%), Positives = 64/146 (43%), Gaps = 15/146 (10%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENIAQQAARIQGVTQVI 63 + + + + +++ + ++T + ++ + +V G ++ I +Q GV ++ Sbjct: 6 LFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILP-YGVDKLH 64 Query: 64 VAQSTIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKDILPRVAAMLDVMQVSEV-- 119 V + + P + +V++ ++ + + A +G+D+ PRV++ L ++ Sbjct: 65 VFDAEGLYPYTSLPHTSILVNLFKEEQPQICLXGATVIGRDLGPRVSSALTSGLTADCHR 124 Query: 120 ------IEIISPKIFKRPSYTGNIIQ 139 E + K P+Y G +I+ Sbjct: 125 PQXATVREGVXKKEIVSPAYQGEVIR 150 >3fet_A Electron transfer flavoprotein subunit alpha related protein; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: MSE; 2.05A {Thermoplasma acidophilum} (A:) Length = 166 Score = 75.2 bits (185), Expect = 1e-14 Identities = 24/157 (15%), Positives = 53/157 (33%), Gaps = 22/157 (14%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQS 67 L ++D ++ T D +++G+ A+ G + A+ Sbjct: 6 FLTVSDDX-----NFLRQVNTLVAGKG-DXDSVIIGEG-------DAKGLGSKVLYRAKK 52 Query: 68 TIFRHKLAGPVSDFVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEIISPK- 126 VS+ ++ IA +Y I + +G++I ++ +E+ + Sbjct: 53 ----GTPFDAVSEGILKIAGNYDYIAIGSTEVGREIAGYLSFKTGFYTATEIFSLEFNGQ 108 Query: 127 --IFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAP 161 KR Y G + E+ +I+T+ Sbjct: 109 KAHTKRFFYGGKTVIEEESDA--RILTVAPGVIEAKD 143 >1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} (B:1-223) Length = 223 Score = 71.6 bits (175), Expect = 1e-13 Identities = 23/192 (11%), Positives = 55/192 (28%), Gaps = 24/192 (12%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS-----HDIHVLVLGDNIENIAQQAARIQGVTQV 62 + + +++ V A ++ +I + +G + A G + Sbjct: 24 SGVDLANVKMSMNPFDEIAVEEAIRLKEKGQAEEIIAVSIGVKQAAETLRTALAMGADRA 83 Query: 63 IVAQSTIFRHKLAGPVSDFVVSIA----RDYKTIMASANAMGKD---ILPRVAAMLDVMQ 115 I+ + + P++ + A + I+A A+ D +AA+L Q Sbjct: 84 ILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQ 143 Query: 116 VSEVIEIIS---PKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAP------KAEKV 166 + ++ R G + ++T P K Sbjct: 144 ATFASKVEIEGAKAKVTREVDGGLQTIAVSLP---AVVTADLRLNEPRYASLPNIMKAKK 200 Query: 167 ASIHKISAEVLE 178 + + +A Sbjct: 201 KPLDEKTAADYG 212 >1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} (C:1-228) Length = 228 Score = 70.4 bits (172), Expect = 3e-13 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 32/217 (14%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS----HDIHVLVLGDNIENI--AQQAARIQGVTQ 61 + + D+ +L+E + A KI D+ V+V+ + + + + +G + Sbjct: 24 MDVDEDFMMYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDRVDESLRKCLAKGADR 83 Query: 62 VIVAQSTIFRHKLAGPVSDFVVSIARDYK--TIMASANAMGKD---ILPRVAAMLDVMQV 116 + A V + + + + A + + VA+ L+ Sbjct: 84 AVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHA 143 Query: 117 SEVIEIISP-----KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHK 171 + V ++ + +R G +Q +E ++TI+ P AS+ Sbjct: 144 AVVADLQYKPGDNKAVIRRELEGGM-LQEVEINCP-AVLTIQLGINKPRY-----ASLRG 196 Query: 172 ISAEVLEKYISNTRFIKEERTSLSPTDLSSAKIVISG 208 I E SL+ LS+ + + Sbjct: 197 IKQ---------AATKPIEEVSLADIGLSANDVGAAQ 224 >1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} (B:1-226) Length = 226 Score = 68.9 bits (168), Expect = 9e-13 Identities = 24/192 (12%), Positives = 51/192 (26%), Gaps = 24/192 (12%) Query: 8 VLLLADYNQENLSEQTARIVTAAQKIS-----HDIHVLVLGDNIENIAQQAARIQGVTQV 62 ++ D + +++ V A ++ ++ + G + A G + Sbjct: 27 TGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIRTALAMGADRG 86 Query: 63 IVAQSTIFRHKLAGPVSDFVVSIA----RDYKTIMASANAMGKD---ILPRVAAMLDVMQ 115 I + + GP+ V ++ A+ D A LD Q Sbjct: 87 IHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQ 146 Query: 116 VSEVIEI---ISPKIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAP------KAEKV 166 + ++ +R G ++ ++T P K Sbjct: 147 GTFASQVTLEGDKLKVEREIDGGLETLRLKLP---AVVTADLRLNEPRYATLPNIMKAKK 203 Query: 167 ASIHKISAEVLE 178 I I L Sbjct: 204 KKIEVIKPGDLG 215 >3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* (A:175-354) Length = 180 Score = 35.9 bits (82), Expect = 0.007 Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 16/131 (12%) Query: 199 LSSAK---IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTG 255 L + ++ G + HK L+ A K+ A I + N + +G TG Sbjct: 24 LRYSSNIALMCGSGCA-----GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTG 78 Query: 256 VTVSPELYIAA-------GISGAIQHISGMKDSKVIVSINTD-ENAPIFKISDYFIVGDI 307 + + + + + I+ I+ + + D +VGDI Sbjct: 79 LIGFSSGFHTMMNADTLVLLGTQFPYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDI 138 Query: 308 FKILPEIEKNL 318 L + + Sbjct: 139 KSTLRALLPLV 149 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 29.7 bits (67), Expect = 0.54 Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 8/31 (25%) Query: 109 AMLDVMQVSEVIEIISPKIFKRPSYTGNIIQ 139 ++ DVM + ++E+ +F Y G +Q Sbjct: 1 SLADVMSIESLVEV----VF----YRGMTMQ 23 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 29.7 bits (66), Expect = 0.55 Identities = 12/103 (11%), Positives = 26/103 (25%), Gaps = 18/103 (17%) Query: 21 EQTARIVTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQVIVAQSTIFRHKLAGPVSD 80 E +I+ ++ V + + Q+++ T V D Sbjct: 200 ELARQIMDVVTEMGKYTEVKTAFGIKD---SVPKGAKIDAQIVIG--TPGT------VMD 248 Query: 81 FVVSIARDYKTIMASANAMGKDILPRVAAMLDVMQVSEVIEII 123 + + + D MLD + + I Sbjct: 249 LM----KRRQLDARDIKVFVLDEADN---MLDQQGLGDQSMRI 284 >1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} (A:) Length = 249 Score = 29.1 bits (64), Expect = 0.73 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 6/62 (9%) Query: 262 LYIAAGISGAIQHISGM----KDSKV-IVSINTDENAPIFKISDYFIVGDIFKILPEIEK 316 + I AG S +Q + + K I+ IN DE P+ I+DY + G +++ E+ + Sbjct: 180 VIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDE-TPLTPIADYSLRGKAGEVMDELVR 238 Query: 317 NL 318 ++ Sbjct: 239 HV 240 >1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} (A:) Length = 235 Score = 28.2 bits (62), Expect = 1.5 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 261 ELYIAAGISG----AIQHISGMKDSKV-IVSINTDENAPIFKISDYFIVGDIFKILPEIE 315 +++IA G SG A + K V +N + + + G +++PE Sbjct: 169 DIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEP-SQVGNEFAEKYYGPASQVVPEFV 227 Query: 316 KNL 318 + L Sbjct: 228 EKL 230 >3k35_A Mono-ADP-ribosyltransferase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, structural genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} (A:) Length = 318 Score = 27.9 bits (61), Expect = 2.0 Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 6/62 (9%) Query: 262 LYIAAGISGAIQHISGM-----KDSKVIVSINTDENAPIFKISDYFIVGDIFKILPEIEK 316 L I G S I+ + + +V +N + +D I G + +++ + K Sbjct: 209 LSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQP-TKHDRHADLRIHGYVDEVMTRLMK 267 Query: 317 NL 318 +L Sbjct: 268 HL 269 >2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1, ethanolamine ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes str} (A:) Length = 455 Score = 27.7 bits (62), Expect = 2.1 Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 8/43 (18%) Query: 69 IFRHKLAGPVSDFVVSIARDYKTIMASANAM--GKDILPRVAA 109 I + L G F + ++A AN G D L VAA Sbjct: 3 ILKTNLFGHTYQF-----KSITDVLAKANEEKSG-DRLAGVAA 39 >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling, bifunctional enzyme; HET: NAD; 1.70A {Pseudomonas SP} (B:131-284) Length = 154 Score = 27.1 bits (60), Expect = 3.0 Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 269 SGAIQHISGMKDSKVIVSINTDENAPIFKISDYFIVGD 306 S AI+ I G K I+ +N E I + + Y + Sbjct: 50 SKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAA 87 >4ubp_A Protein (urease (chain A)); nickel, acetohydroxamic acid, metalloenzyme; HET: KCX; 1.55A {Bacillus pasteurii} (A:) Length = 100 Score = 27.3 bits (61), Expect = 3.1 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%) Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116 ++ F++ ARD KT +A GK +L R V M+D +Q Sbjct: 39 ITSFIMEGARDGKT-VAMLMEEGKHVLTRDDVMEGVPEMIDDIQA 82 >2fvh_A Urease gamma subunit; protein: UREA homolog, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} (A:) Length = 120 Score = 27.0 bits (60), Expect = 3.2 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 7/45 (15%) Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116 ++D ++ ARD +T +A A G+++L R V ML +QV Sbjct: 59 IADHILEGARDGRT-VAELMASGREVLGRDDVMEGVPEMLAEVQV 102 >3iar_A Adenosine deaminase; purine metabolism, structural genomics, structural genomics consortium, SGC, acetylation, disease mutation; HET: 3D1; 1.52A {Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 1a4m_A* 1a4l_A* ... (A:1-60,A:240-367) Length = 188 Score = 26.8 bits (59), Expect = 3.7 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 23/102 (22%) Query: 213 GSMENFHKLLLPLAKKLGAAIGA-TRDAVDAGFAPND---------------WQI---GQ 253 GS++ + +L ++ G A+ A T + + + + Sbjct: 17 GSIK--PETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPDFLALEDQALYNRLRQEN 74 Query: 254 TGVTVSPE--LYIAAGISGAIQHISGMKDSKVIVSINTDENA 293 + P A + +K+ + S+NTD+ Sbjct: 75 MHFEICPWSSYLTGAWKPDTEHAVIRLKNDQANYSLNTDDPL 116 >3jyw_H 60S ribosomal protein L9(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_H (H:80-179) Length = 100 Score = 26.7 bits (59), Expect = 4.3 Identities = 9/36 (25%), Positives = 22/36 (61%) Query: 27 VTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQV 62 VT + +++ G+++E+++Q AA +Q + +V Sbjct: 48 VTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRV 83 >2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (e:87-192) Length = 106 Score = 26.6 bits (59), Expect = 4.7 Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 27 VTAAQKISHDIHVLVLGDNIENIAQQAARIQGVTQV 62 V + + +++ G++IE ++ AA IQ T V Sbjct: 46 VACSVSQAQKDELILEGNDIELVSNSAALIQQATTV 81 >1e9y_A Urease alpha subunit; hydrolase, dodecamer, acetohydroxamic acid; HET: KCX; 3.0A {Helicobacter pylori} (A:1-112) Length = 112 Score = 26.2 bits (58), Expect = 5.3 Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 6/45 (13%) Query: 78 VSDFVVSIARDYKTIMASANAMGKDILPR------VAAMLDVMQV 116 +S ++ AR K A G+ +L VA+M+ + + Sbjct: 39 ISAHIMEEARAGKKTAAELMQEGRTLLKPDDVMDGVASMIHEVGI 83 >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomography, contractIle protein/transport protein complex; 24.00A {Gallus gallus} (A:698-753) Length = 56 Score = 26.2 bits (58), Expect = 5.6 Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 220 KLLLPLAKKLGAAIGATRDAVDA-GFAPNDWQIGQTGV 256 ++L+ L ++ ++ + +Q G+T + Sbjct: 15 RVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKI 52 >1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} (A:698-753) Length = 56 Score = 26.2 bits (58), Expect = 5.6 Identities = 5/38 (13%), Positives = 16/38 (42%), Gaps = 1/38 (2%) Query: 220 KLLLPLAKKLGAAIGATRDAVDA-GFAPNDWQIGQTGV 256 ++L+ L ++ ++ + +Q G+T + Sbjct: 15 RVLMKQKDVLSDRKQTCKNVLEKLILDKDKYQFGKTKI 52 >1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (E:80-178) Length = 99 Score = 26.3 bits (58), Expect = 6.0 Identities = 9/24 (37%), Positives = 16/24 (66%) Query: 39 VLVLGDNIENIAQQAARIQGVTQV 62 + V G +IE + Q AA I+ +T++ Sbjct: 53 LTVSGPDIEAVGQTAADIEQLTRI 76 >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} (A:167-309) Length = 143 Score = 26.1 bits (57), Expect = 6.3 Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%) Query: 26 IVTAAQKISHDIHVLVLGD-NIENIAQQAARIQGVTQVIVAQSTIFRHKLA 75 + AA+ + +V ++G + +IA Q ++ VI + KLA Sbjct: 11 VKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA 61 >2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} (A:) Length = 188 Score = 25.7 bits (56), Expect = 7.8 Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 4/104 (3%) Query: 126 KIFKRPSYTGNIIQTIETTDTYQIITIRAIAFPPAPKAEKVASIHKISAEVLEKYISNTR 185 KI K G + ++ + P + +A + + + E++ Sbjct: 86 KIIKELKDAGIDVIENPEIKIQNMVATADLGIEP--NLDDIALMVEGTEYEPEQF--PGL 141 Query: 186 FIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKLLLPLAKKL 229 + + + S K+VI+G KS + K +L K++ Sbjct: 142 VYRLDDPKVVVLIFGSGKVVITGLKSEEDAKRALKKILDTIKEV 185 >2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} (A:205-389,A:582-616) Length = 220 Score = 25.9 bits (56), Expect = 8.2 Identities = 20/138 (14%), Positives = 35/138 (25%), Gaps = 22/138 (15%) Query: 199 LSSAK---IVISGGKSFGSMENFHKLLLPLAKKLGAAIGATRDAVDAGFAPNDWQIGQTG 255 L A+ IV GG + LL A+ + T ++ G G Sbjct: 19 LIQAERPVIVAGGG---VINADAAALLQQFAELTSVPVIPTLXGWGCIPDDHELXAGXVG 75 Query: 256 VTVSPELYIAAGISGA---------------IQHISGMKDSKVIVSINTDENAPIFKISD 300 + + Y A + + + K++ D Sbjct: 76 LQTAHR-YGNATLLASDXVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPD 134 Query: 301 YFIVGDIFKILPEIEKNL 318 IV D L + + Sbjct: 135 LGIVSDAKAALTLLVEVA 152 >3lm2_A Putative kinase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2, transferase; HET: MSE; 1.70A {Agrobacterium tumefaciens} (A:100-226) Length = 127 Score = 25.5 bits (56), Expect = 9.8 Identities = 15/86 (17%), Positives = 26/86 (30%), Gaps = 14/86 (16%) Query: 163 AEKVASIHKISAEVLEKYISN-TRFIKEERTSLSPTDLSSAKIVISGGKSFGSMENFHKL 221 E S + K+ ++ +L P ++VI GG + Sbjct: 50 YEHYVSEAYREKKGNAKWQKRVQDVVERLSAALEP-----DEVVIGGGNV-----ERLEN 99 Query: 222 LLPLAKKLG---AAIGATRDAVDAGF 244 L P ++ A G R +A Sbjct: 100 LPPKCRRGDNAXAFEGGFRLWKNADL 125 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.133 0.367 Gapped Lambda K H 0.267 0.0723 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,247,445 Number of extensions: 96574 Number of successful extensions: 351 Number of sequences better than 10.0: 1 Number of HSP's gapped: 340 Number of HSP's successfully gapped: 35 Length of query: 318 Length of database: 4,956,049 Length adjustment: 88 Effective length of query: 230 Effective length of database: 1,981,209 Effective search space: 455678070 Effective search space used: 455678070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.0 bits)