HHsearch alignment for GI: 254780370 and conserved domain: TIGR00979
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=100.00 E-value=0 Score=385.74 Aligned_cols=409 Identities=21% Similarity=0.277 Sum_probs=339.0
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCC-HH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 233320332384346999984255-07-8999999999999999999998799998999999999999996664598001
Q gi|254780370|r 9 EVNQMWGGRFSSSPSWIMEKINVS-ID-FDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF 86 (473)
Q Consensus 9 ~~~~lW~grf~~~~~~~~~~~~~s-~~-~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~ 86 (473)
T Consensus 14 ~adkyWG----AQT~RS~~nF~iG~~e~MP~~lI~Afa~lKk~aA~~N~~LG~L~~~k~~~I~~A~DeiL~G~~~d~FPL 89 (459)
T TIGR00979 14 PADKYWG----AQTQRSLENFKIGGKEKMPKELIRAFAILKKAAAIVNEDLGKLDAEKADAIAAAADEILAGKFDDHFPL 89 (459)
T ss_pred CHHHHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 2112323----666898872566888778788999999999999999686279988899999998769873874477985
Q ss_pred CCCC---C-----HHHHHHHHHHHHHHH-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 5664---6-----379999999973111-02342--01------441011237887999999999-99986778899999
Q gi|254780370|r 87 SRDL---E-----DIHMNIEARLTSLIG-SIAGK--MH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTIL 148 (473)
Q Consensus 87 ~~~~---e-----dvh~~iE~~l~~~~G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L 148 (473)
T Consensus 90 ~vWQTGSGTQsNMN~NEViANrA~~~~gG~~G~k~~iHPNDhVNkSQSSNDtFPTAMHIAAv~~~~~~LIP~L~~L~~~l 169 (459)
T TIGR00979 90 VVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKKPIHPNDHVNKSQSSNDTFPTAMHIAAVLAIKEQLIPALENLKKTL 169 (459)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37867877410022589999999998477667888789876568887788876678999999999875316799999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-------H
Q ss_conf 744773014520016653011334445678888887862069899987454233565320335666789989-------6
Q gi|254780370|r 149 LDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHF-------T 221 (473)
Q Consensus 149 ~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~-------~ 221 (473)
T Consensus 170 ~~Ks~~F~~ivKIGRTHLqDAtPLTLGQEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGTAV-GTGLN~~~~f~~Kv~~~~ 248 (459)
T TIGR00979 170 DEKSKEFADIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIEESLPHLYELALGGTAV-GTGLNTHPGFDEKVAEEI 248 (459)
T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCHHHHHHHHHHH
T ss_conf 9999986087200564413244540024589999999999999999999999973577323-156688666788999999
Q ss_pred HHHCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 3103876-434785673027886424677768876648999999999841---245615404554565300444336013
Q gi|254780370|r 222 AKELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDG 297 (473)
Q Consensus 222 a~~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~ 297 (473)
T Consensus 249 ~~~T~~~F~~ApNKF~ALa~HDAiv~ahGaL~~LA~sL~KIAnD~R~LgSGPRCGlGEl~~PENE-PGSSIMPGKVNPTQ 327 (459)
T TIGR00979 249 AKFTGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFLPENE-PGSSIMPGKVNPTQ 327 (459)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCH
T ss_conf 99737899899616778644589998647899999988779877878507886420025677787-57876978987104
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH----HHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCC
Q ss_conf 8998766899975233587674048400001001005579----8899999986567652-3058666521012112378
Q gi|254780370|r 298 AELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPV----FDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS 372 (473)
Q Consensus 298 ~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l----~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~ 372 (473)
T Consensus 328 ~EalTMVC~QVmGNd~tI~~agS~---G-nFELNVFkPViIyNfLqS~~LLsDa~~SF~~hcv~Gi~pN~~ri~~~l~~S 403 (459)
T TIGR00979 328 CEALTMVCVQVMGNDATIGFAGSQ---G-NFELNVFKPVIIYNFLQSVRLLSDAMESFREHCVVGIEPNKERIQQLLENS 403 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC---C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 358899888773002454533204---6-531234525899879989999998999888640124502458999997521
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 443999999999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r 373 HSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 373 ~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
T Consensus 404 LMLVTALN----PhiG------Yd~AakiAK~Ahk~GitLKeaAl~----Lg~Lse~eFD~~V~PE~Mv 458 (459)
T TIGR00979 404 LMLVTALN----PHIG------YDNAAKIAKKAHKEGITLKEAALE----LGLLSEEEFDKWVVPEKMV 458 (459)
T ss_pred HHHHHHHC----CCCC------HHHHHHHHHHHHHCCCCHHHHHHH----CCCCCHHHCCCCCCCCCCC
T ss_conf 13345423----5457------478999999997439777899974----4897868827827986267