HHsearch alignment for GI: 254780370 and conserved domain: TIGR00979

>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=100.00  E-value=0  Score=385.74  Aligned_cols=409  Identities=21%  Similarity=0.277  Sum_probs=339.0

Q ss_pred             HHHHHCCCCCCCCHHHHHHHHCCC-HH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf             233320332384346999984255-07-8999999999999999999998799998999999999999996664598001
Q gi|254780370|r    9 EVNQMWGGRFSSSPSWIMEKINVS-ID-FDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF   86 (473)
Q Consensus         9 ~~~~lW~grf~~~~~~~~~~~~~s-~~-~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~   86 (473)
T Consensus        14 ~adkyWG----AQT~RS~~nF~iG~~e~MP~~lI~Afa~lKk~aA~~N~~LG~L~~~k~~~I~~A~DeiL~G~~~d~FPL   89 (459)
T TIGR00979        14 PADKYWG----AQTQRSLENFKIGGKEKMPKELIRAFAILKKAAAIVNEDLGKLDAEKADAIAAAADEILAGKFDDHFPL   89 (459)
T ss_pred             CHHHHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             2112323----666898872566888778788999999999999999686279988899999998769873874477985


Q ss_pred             CCCC---C-----HHHHHHHHHHHHHHH-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf             5664---6-----379999999973111-02342--01------441011237887999999999-99986778899999
Q gi|254780370|r   87 SRDL---E-----DIHMNIEARLTSLIG-SIAGK--MH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTIL  148 (473)
Q Consensus        87 ~~~~---e-----dvh~~iE~~l~~~~G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L  148 (473)
T Consensus        90 ~vWQTGSGTQsNMN~NEViANrA~~~~gG~~G~k~~iHPNDhVNkSQSSNDtFPTAMHIAAv~~~~~~LIP~L~~L~~~l  169 (459)
T TIGR00979        90 VVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKKPIHPNDHVNKSQSSNDTFPTAMHIAAVLAIKEQLIPALENLKKTL  169 (459)
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             37867877410022589999999998477667888789876568887788876678999999999875316799999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-------H
Q ss_conf             744773014520016653011334445678888887862069899987454233565320335666789989-------6
Q gi|254780370|r  149 LDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHF-------T  221 (473)
Q Consensus       149 ~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~-------~  221 (473)
T Consensus       170 ~~Ks~~F~~ivKIGRTHLqDAtPLTLGQEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGTAV-GTGLN~~~~f~~Kv~~~~  248 (459)
T TIGR00979       170 DEKSKEFADIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIEESLPHLYELALGGTAV-GTGLNTHPGFDEKVAEEI  248 (459)
T ss_pred             HHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCHHHHHHHHHHH
T ss_conf             9999986087200564413244540024589999999999999999999999973577323-156688666788999999


Q ss_pred             HHHCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf             3103876-434785673027886424677768876648999999999841---245615404554565300444336013
Q gi|254780370|r  222 AKELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDG  297 (473)
Q Consensus       222 a~~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~  297 (473)
T Consensus       249 ~~~T~~~F~~ApNKF~ALa~HDAiv~ahGaL~~LA~sL~KIAnD~R~LgSGPRCGlGEl~~PENE-PGSSIMPGKVNPTQ  327 (459)
T TIGR00979       249 AKFTGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFLPENE-PGSSIMPGKVNPTQ  327 (459)
T ss_pred             HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCH
T ss_conf             99737899899616778644589998647899999988779877878507886420025677787-57876978987104


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH----HHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCC
Q ss_conf             8998766899975233587674048400001001005579----8899999986567652-3058666521012112378
Q gi|254780370|r  298 AELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPV----FDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS  372 (473)
Q Consensus       298 ~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l----~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~  372 (473)
T Consensus       328 ~EalTMVC~QVmGNd~tI~~agS~---G-nFELNVFkPViIyNfLqS~~LLsDa~~SF~~hcv~Gi~pN~~ri~~~l~~S  403 (459)
T TIGR00979       328 CEALTMVCVQVMGNDATIGFAGSQ---G-NFELNVFKPVIIYNFLQSVRLLSDAMESFREHCVVGIEPNKERIQQLLENS  403 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCC---C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             358899888773002454533204---6-531234525899879989999998999888640124502458999997521


Q ss_pred             CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf             443999999999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r  373 HSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI  441 (473)
Q Consensus       373 ~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v  441 (473)
T Consensus       404 LMLVTALN----PhiG------Yd~AakiAK~Ahk~GitLKeaAl~----Lg~Lse~eFD~~V~PE~Mv  458 (459)
T TIGR00979       404 LMLVTALN----PHIG------YDNAAKIAKKAHKEGITLKEAALE----LGLLSEEEFDKWVVPEKMV  458 (459)
T ss_pred             HHHHHHHC----CCCC------HHHHHHHHHHHHHCCCCHHHHHHH----CCCCCHHHCCCCCCCCCCC
T ss_conf             13345423----5457------478999999997439777899974----4897868827827986267