HHsearch alignment for GI: 254780370 and conserved domain: cd01362
>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=526.67 Aligned_cols=409 Identities=20% Similarity=0.256 Sum_probs=344.9
Q ss_pred HHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 3320332384346999984255-078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 11 NQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 11 ~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
T Consensus 15 ~~~yG----~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~G~L~~~~~~aI~~A~~ei~~g~~~~~F~vd~~ 90 (455)
T cd01362 15 DALWG----AQTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVW 90 (455)
T ss_pred CCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 56326----99999996749889889999999999999999999998599999999999999999984997135145200
Q ss_pred CC----HHHHHHHHHHHHHH----H-CCC--CCCC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 46----37999999997311----1-023--4201------441011237887999999999-99986778899999744
Q gi|254780370|r 90 LE----DIHMNIEARLTSLI----G-SIA--GKMH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTILLDK 151 (473)
Q Consensus 90 ~e----dvh~~iE~~l~~~~----G-~~~--~~lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L~~~ 151 (473)
T Consensus 91 Q~GaGTstNMN~NEViAn~A~e~~g~~~g~~~~vhPndhVN~~QStND~~PTA~~ia~~~~l~~~L~~~l~~L~~~L~~K 170 (455)
T cd01362 91 QTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAK 170 (455)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06887633240999999999998476678888769300100234667642279999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHH
Q ss_conf 77301452001665301133444567888888786206989998745423356532033566678998-------96310
Q gi|254780370|r 152 AEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKE 224 (473)
Q Consensus 152 A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~ 224 (473)
T Consensus 171 a~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~RL~~a~~~l~~~~lGGtAv-GTG~n~~~~f~~~~~~~L~~~ 249 (455)
T cd01362 171 ADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAV-GTGLNAHPGFAEKVAAELAEL 249 (455)
T ss_pred HHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 9984477400541363476600899999999989999999999999999860577443-478788812679999999886
Q ss_pred CCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3876-434785673027886424677768876648999999999841---245615404554565300444336013899
Q gi|254780370|r 225 LGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 (473)
Q Consensus 225 LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ 300 (473)
T Consensus 250 tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP-~~q~GSSIMPgKvNPv~~E~ 328 (455)
T cd01362 250 TGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLP-ENEPGSSIMPGKVNPTQCEA 328 (455)
T ss_pred HCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCCCCCCCCCCCCCCHHHHH
T ss_conf 29997116878999848709999999999999999999999999827765684355479-99997787899879889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHH
Q ss_conf 87668999752335876740484000010010055798899999986567652-30586665210121123784439999
Q gi|254780370|r 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDL 379 (473)
Q Consensus 301 ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~l 379 (473)
T Consensus 329 v~~v~~~ViGnd~ti~~a~~~G~~ELNv~~Plia~~ll~si~lL~~~~~~f~~~~i~gi~vn~e~~~~~l~~S~~l~TaL 408 (455)
T cd01362 329 LTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTAL 408 (455)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHHHHH
T ss_conf 99999999665999998663530566422838999888899999999999999987658888999999998574389883
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 999998539997999999999999999829896898999999400113268999659999
Q gi|254780370|r 380 ADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVES 439 (473)
Q Consensus 380 Ad~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~ 439 (473)
T Consensus 409 ~p~i----------GY~~aa~iak~A~~~g~slrev~le~----~~ls~eeld~lldP~~ 454 (455)
T cd01362 409 NPHI----------GYDKAAKIAKKAHKEGLTLKEAALEL----GYLTEEEFDRLVDPEK 454 (455)
T ss_pred HHHH----------HHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCHHHHHHHCCCCC
T ss_conf 2376----------39999999999999399899999885----9999999998659212