Query gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 473
No_of_seqs 181 out of 2881
Neff 6.8
Searched_HMMs 39220
Date Sun May 29 15:55:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780370.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00838 argH argininosuccina 100.0 0 0 1232.5 37.8 455 13-467 1-469 (469)
2 PRK12308 bifunctional arginino 100.0 0 0 1115.0 43.2 457 12-469 2-459 (614)
3 COG0165 ArgH Argininosuccinate 100.0 0 0 1068.4 41.9 457 10-467 2-458 (459)
4 PRK04833 argininosuccinate lya 100.0 0 0 1066.1 42.9 453 12-465 2-455 (455)
5 PRK00855 argininosuccinate lya 100.0 0 0 1040.6 43.3 457 10-467 3-459 (459)
6 PRK06705 argininosuccinate lya 100.0 0 0 1000.1 43.8 450 22-472 17-477 (502)
7 KOG1316 consensus 100.0 0 0 962.4 35.9 460 8-469 3-462 (464)
8 cd01359 Argininosuccinate_lyas 100.0 0 0 944.9 41.2 435 32-466 1-435 (435)
9 PRK06389 argininosuccinate lya 100.0 0 0 917.7 38.7 414 12-441 2-423 (434)
10 PRK02186 argininosuccinate lya 100.0 0 0 850.5 33.2 440 22-471 422-866 (892)
11 PRK08540 adenylosuccinate lyas 100.0 0 0 637.0 33.4 418 36-467 21-449 (449)
12 cd01360 Adenylsuccinate_lyase_ 100.0 0 0 619.6 29.7 370 4-403 1-377 (387)
13 cd01597 pCLME pCLME: prokaryot 100.0 0 0 610.6 31.8 424 2-461 3-437 (437)
14 cd01595 Adenylsuccinate_lyase_ 100.0 0 0 603.4 29.5 358 36-400 7-375 (381)
15 PRK07492 adenylosuccinate lyas 100.0 0 0 599.1 31.6 412 1-441 1-421 (433)
16 PRK08470 adenylosuccinate lyas 100.0 0 0 568.3 35.7 414 1-459 1-441 (442)
17 PRK07380 adenylosuccinate lyas 100.0 0 0 564.7 37.0 409 1-457 1-428 (431)
18 pfam00206 Lyase_1 Lyase. 100.0 0 0 580.5 23.4 295 16-310 1-312 (312)
19 PRK09053 3-carboxy-cis,cis-muc 100.0 0 0 556.3 37.0 407 36-465 23-450 (452)
20 PRK08937 adenylosuccinate lyas 100.0 0 0 542.8 33.6 413 1-459 1-423 (425)
21 PRK06390 adenylosuccinate lyas 100.0 0 0 539.4 33.2 421 36-471 21-451 (451)
22 cd01334 Lyase_I Lyase class I 100.0 0 0 544.3 27.6 317 41-361 2-330 (330)
23 TIGR00928 purB adenylosuccinat 100.0 0 0 541.7 29.4 410 1-458 1-468 (469)
24 cd01362 Fumarase_classII Class 100.0 0 0 526.7 31.2 409 11-439 15-454 (455)
25 cd01357 Aspartatase Aspartase_ 100.0 0 0 520.1 32.0 407 10-436 14-450 (450)
26 PRK00485 fumC fumarate hydrata 100.0 0 0 516.9 31.7 411 11-441 19-460 (462)
27 COG0015 PurB Adenylosuccinate 100.0 0 0 509.2 35.4 416 1-459 1-436 (438)
28 cd03302 Adenylsuccinate_lyase_ 100.0 0 0 508.9 31.9 410 1-441 1-434 (436)
29 PRK13353 aspartate ammonia-lya 100.0 0 0 492.3 32.8 412 10-441 19-460 (473)
30 cd01596 Aspartatase_like Aspar 100.0 0 0 477.6 32.9 406 11-436 15-450 (450)
31 PRK12273 aspA aspartate ammoni 100.0 0 0 456.7 31.7 417 11-451 20-468 (471)
32 PRK12425 fumarate hydratase; P 100.0 0 0 441.1 30.7 417 10-450 16-463 (464)
33 PRK05975 3-carboxy-cis,cis-muc 100.0 0 0 423.7 25.2 327 12-359 9-346 (353)
34 TIGR02426 protocat_pcaB 3-carb 100.0 0 0 410.1 26.9 329 13-358 1-351 (351)
35 PRK09285 adenylosuccinate lyas 100.0 0 0 401.6 24.6 406 15-458 13-455 (456)
36 COG1027 AspA Aspartate ammonia 100.0 0 0 391.3 29.8 405 21-441 25-461 (471)
37 cd01598 PurB PurB: PurB_like 100.0 0 0 401.2 19.1 384 36-441 7-423 (425)
38 COG0114 FumC Fumarase [Energy 100.0 0 0 379.0 32.0 408 10-441 17-459 (462)
39 TIGR00839 aspA aspartate ammon 100.0 0 0 390.7 22.3 404 22-441 22-458 (469)
40 TIGR00979 fumC_II fumarate hyd 100.0 0 0 385.7 26.1 409 9-441 14-458 (459)
41 cd01594 Lyase_I_like Lyase cla 100.0 0 0 322.4 20.9 222 41-351 2-230 (231)
42 KOG2700 consensus 100.0 5.6E-44 0 308.8 19.9 408 32-461 25-460 (481)
43 KOG1317 consensus 100.0 3.8E-40 9.8E-45 283.6 22.4 407 10-441 42-484 (487)
44 pfam10397 ADSL_C Adenylosuccin 98.3 2E-06 5E-11 61.9 7.3 80 371-458 1-80 (81)
45 pfam08328 ASL_C Adenylosuccina 95.9 0.019 4.9E-07 35.6 5.3 105 327-441 4-115 (115)
46 KOG2700 consensus 94.7 0.37 9.3E-06 27.2 9.4 37 146-183 217-254 (481)
47 PRK07680 late competence prote 85.8 2.7 6.9E-05 21.5 8.0 93 356-473 153-271 (273)
48 pfam10415 FumaraseC_C Fumarase 82.3 2 5E-05 22.4 3.8 44 394-441 10-53 (55)
49 PRK06928 pyrroline-5-carboxyla 78.7 4.9 0.00013 19.8 8.8 47 357-403 155-208 (275)
50 COG0345 ProC Pyrroline-5-carbo 68.8 8.6 0.00022 18.2 8.7 97 350-472 147-266 (266)
51 PRK11880 pyrroline-5-carboxyla 60.1 12 0.00032 17.2 8.4 72 374-471 179-266 (267)
52 TIGR00737 nifR3_yhdG putative 59.1 13 0.00033 17.0 5.4 15 335-349 190-204 (336)
53 PRK12491 pyrroline-5-carboxyla 54.6 15 0.00039 16.6 8.2 90 357-472 157-269 (272)
54 TIGR01809 Shik-DH-AROM shikima 53.0 4 0.0001 20.4 0.1 54 278-331 55-111 (291)
55 TIGR01793 cit_synth_euk citrat 52.5 9.5 0.00024 17.9 2.0 186 194-402 172-410 (430)
56 KOG0993 consensus 48.4 18 0.00045 16.1 2.8 46 283-330 245-290 (542)
57 TIGR03191 benz_CoA_bzdO benzoy 47.8 19 0.0005 15.9 4.6 33 354-390 361-393 (430)
58 COG3280 TreY Maltooligosyl tre 46.8 8.8 0.00022 18.1 1.1 43 113-155 378-420 (889)
59 PRK07679 pyrroline-5-carboxyla 44.8 22 0.00055 15.6 8.2 89 358-472 160-271 (279)
60 pfam10372 YojJ Bacterial membr 43.7 22 0.00057 15.5 4.3 62 124-185 9-70 (70)
61 TIGR01241 FtsH_fam ATP-depende 42.4 23 0.0006 15.3 3.0 194 256-472 267-488 (505)
62 COG0092 RpsC Ribosomal protein 42.2 24 0.0006 15.3 4.5 65 344-411 76-140 (233)
63 TIGR01839 PHA_synth_II poly(R) 41.7 16 0.00041 16.4 1.7 40 346-386 272-312 (560)
64 TIGR02814 pfaD_fam PfaD family 38.8 27 0.00068 15.0 2.7 63 49-113 34-111 (449)
65 PTZ00084 40S ribosomal protein 38.0 27 0.0007 14.9 4.5 68 341-410 66-134 (220)
66 PRK12549 shikimate 5-dehydroge 38.0 6.6 0.00017 19.0 -0.7 47 282-329 64-110 (284)
67 TIGR01008 rpsC_E_A ribosomal p 36.0 29 0.00075 14.7 4.8 69 340-411 59-129 (204)
68 PRK04191 rps3p 30S ribosomal p 35.9 29 0.00075 14.7 4.2 53 356-410 76-128 (225)
69 TIGR01009 rpsC_bact ribosomal 34.9 30 0.00078 14.6 3.6 69 340-410 87-155 (217)
70 cd07049 BMC_EutL_repeat1 ethan 33.4 32 0.00082 14.4 2.7 22 447-468 78-99 (103)
71 PRK09310 aroDE bifunctional 3- 31.5 5.7 0.00015 19.4 -1.9 50 281-331 268-317 (477)
72 TIGR02290 M3_fam_3 oligoendope 30.8 36 0.00091 14.1 3.9 148 211-365 275-443 (600)
73 TIGR02867 spore_II_P stage II 30.6 36 0.00091 14.1 3.0 36 377-413 63-98 (221)
74 TIGR01267 Phe4hydrox_mono phen 30.2 26 0.00066 15.0 1.3 82 243-332 126-215 (251)
75 KOG0042 consensus 28.6 39 0.00099 13.9 4.9 81 380-468 476-569 (680)
76 COG3937 Uncharacterized conser 27.7 40 0.001 13.8 8.1 81 376-473 26-106 (108)
77 PRK06131 dihydroxy-acid dehydr 27.5 30 0.00077 14.6 1.2 81 155-239 148-229 (577)
78 KOG0625 consensus 27.4 41 0.001 13.8 2.2 28 44-71 73-105 (558)
79 PRK13017 dihydroxy-acid dehydr 26.8 31 0.00078 14.6 1.2 82 155-240 151-233 (595)
80 pfam12037 DUF3523 Domain of un 25.3 44 0.0011 13.5 3.8 74 144-227 193-267 (272)
81 PRK10963 hypothetical protein; 25.3 44 0.0011 13.5 3.4 18 129-146 48-65 (223)
82 TIGR00906 2A0303 cationic amin 24.4 46 0.0012 13.4 3.8 21 378-402 412-432 (616)
83 PRK13775 formimidoylglutamase; 24.3 33 0.00084 14.4 0.9 19 1-20 1-19 (328)
84 pfam11348 DUF3150 Protein of u 24.2 46 0.0012 13.4 9.2 46 217-265 132-183 (257)
85 PRK06476 pyrroline-5-carboxyla 23.9 47 0.0012 13.4 8.1 53 350-403 139-198 (255)
86 TIGR02764 spore_ybaN_pdaB poly 23.7 47 0.0012 13.3 1.7 86 183-280 81-196 (198)
87 PRK08727 hypothetical protein; 23.5 48 0.0012 13.3 4.7 52 368-422 175-226 (233)
88 pfam10925 DUF2680 Protein of u 23.3 48 0.0012 13.3 6.6 41 44-84 17-57 (59)
89 TIGR01936 nqrA NADH:ubiquinone 22.8 33 0.00084 14.4 0.7 22 155-176 221-245 (466)
90 PRK00208 thiG thiazole synthas 22.8 49 0.0013 13.2 3.0 40 220-262 192-231 (256)
91 cd01785 PDZ_GEF_RA PDZ_GEF_RA 22.3 50 0.0013 13.2 2.4 42 261-302 24-71 (85)
92 pfam00417 Ribosomal_S3_N Ribos 22.2 26 0.00066 15.0 0.1 11 289-299 1-11 (62)
93 PRK06620 hypothetical protein; 22.0 51 0.0013 13.1 4.3 43 370-412 162-204 (214)
94 KOG1510 consensus 22.0 51 0.0013 13.1 4.5 46 278-323 31-80 (139)
95 PRK12550 shikimate 5-dehydroge 21.9 12 0.00031 17.2 -1.7 15 355-369 253-267 (272)
96 TIGR01399 hrcV type III secret 21.7 52 0.0013 13.1 3.3 110 354-469 528-659 (709)
97 PRK00258 aroE shikimate 5-dehy 21.3 9.1 0.00023 18.0 -2.4 14 282-295 59-72 (275)
98 KOG3124 consensus 21.3 53 0.0013 13.0 2.1 40 373-413 178-221 (267)
99 PRK06763 F0F1 ATP synthase sub 20.9 26 0.00067 15.0 -0.1 19 197-215 5-23 (213)
100 pfam05690 ThiG Thiazole biosyn 20.7 54 0.0014 12.9 3.0 40 220-262 190-229 (246)
101 TIGR00625 tfb2 Transcription f 20.4 34 0.00087 14.3 0.4 65 341-414 357-421 (507)
102 KOG2528 consensus 20.4 55 0.0014 12.9 2.9 31 374-409 388-418 (490)
103 TIGR01229 rocF_arginase argina 20.4 55 0.0014 12.9 1.8 88 114-206 9-107 (337)
104 TIGR01858 tag_bisphos_ald clas 20.1 56 0.0014 12.8 1.7 51 400-461 214-271 (282)
105 COG1429 CobN Cobalamin biosynt 20.1 56 0.0014 12.8 2.5 41 114-155 940-980 (1388)
No 1
>TIGR00838 argH argininosuccinate lyase; InterPro: IPR009049 This entry represents argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens. ; GO: 0004056 argininosuccinate lyase activity, 0042450 arginine biosynthetic process via ornithine.
Probab=100.00 E-value=0 Score=1232.45 Aligned_cols=455 Identities=51% Similarity=0.836 Sum_probs=451.1
Q ss_pred HCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC-CEECCCCCC
Q ss_conf 2033238434699998425507899999999999999999999879999899999999999999666459-800156646
Q gi|254780370|r 13 MWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDG-SFVFSRDLE 91 (473)
Q Consensus 13 lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~-~~~~~~~~e 91 (473)
||||||++++++.+.+|+.|+.||++|++|||.+++||+.||.++||||+|++++|.+||.+|++++..+ +|.+++.+|
T Consensus 1 LW~GRf~~~~~~~~~~f~~Sl~FD~~l~~~Di~~~~AH~~~L~k~GiLt~Ee~~~l~~gL~~l~~e~~~~P~~~~~~~~E 80 (469)
T TIGR00838 1 LWGGRFTGGTDPAVAKFNASLSFDKELAEADIEGSIAHTKMLKKAGILTEEEAAKLIEGLNELKEEVREGPKFNLDVDLE 80 (469)
T ss_pred CCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 96542245700799960487578999999721335999999875279888899999999999999886088878961710
Q ss_pred HHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 379999999973111-0234201441011237887999999999999867788999997447730145200166530113
Q gi|254780370|r 92 DIHMNIEARLTSLIG-SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQ 170 (473)
Q Consensus 92 dvh~~iE~~l~~~~G-~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~ 170 (473)
|||++||+.|++++| ++||||||||||||||+|++|||+|+.+..|.+.|.+++++|+++|+.|.+|+||||||+|+||
T Consensus 81 DiH~a~E~~Li~~~G~d~ggklHTGRSRNDQVATDlrl~lr~~v~~~~~~l~~~~~~L~e~Ae~~~~~~mPGYTHLQrAQ 160 (469)
T TIGR00838 81 DIHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVREIAEALLDLQKVLIELAEKHVETLMPGYTHLQRAQ 160 (469)
T ss_pred HHHHHHHHHHHHHCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf 35679988887623701013124678764178998999999999999999999999999986128736614851013501
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 34445678888887862069899987454233565320335666789989631038764347856730278864246777
Q gi|254780370|r 171 PVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSH 250 (473)
Q Consensus 171 P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~ 250 (473)
||||+|||++|+++|.||.+||.++++|+|+|||||||+|||+|||||+++|++|||+....||+||||+|||++|++++
T Consensus 161 Pi~lAHhLLAY~~~l~RD~~RL~d~~kR~n~SPLGsGAlAGt~f~iDR~~~A~lLGF~~~~~NSlDaVSdRDFi~E~l~~ 240 (469)
T TIGR00838 161 PITLAHHLLAYAEMLERDYERLQDALKRVNVSPLGSGALAGTSFPIDREYTAELLGFDAVTENSLDAVSDRDFIIELLFV 240 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 05699999999989998899999999885048865503206898768888976318678875204665207899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH
Q ss_conf 68876648999999999841245615404554565300444336013899876689997523358767404840000100
Q gi|254780370|r 251 SAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDM 330 (473)
Q Consensus 251 l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDl 330 (473)
++++|+|||||||||++|||.|||||+|||.|||||||||||||||++|++|||+|+|+|++++++.++||+|++|||||
T Consensus 241 ~a~~m~hLSR~aEelIlw~s~EFgfieL~D~~stGSSiMPQKKNPD~aELiRGK~Grv~G~L~g~L~~lKalP~aYNrDl 320 (469)
T TIGR00838 241 AALIMVHLSRLAEELILWSSQEFGFIELPDEFSTGSSIMPQKKNPDVAELIRGKTGRVIGNLTGLLTILKALPLAYNRDL 320 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 99997417689899999844687606745732005768888777207999987552689999999999711233235100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10055798899999986567652305866652101211237844399999999985399979999999999999998298
Q gi|254780370|r 331 QEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQC 410 (473)
Q Consensus 331 q~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~ 410 (473)
||+|+++|||++++..++.+++.||.+|+||++||.+.+..+|++|||||||||++.|||||+||||||++|..|+++|+
T Consensus 321 QEdkE~LFD~v~t~~~~~~~~~~~l~~i~vn~er~~e~A~~~f~~ATdLADyLV~k~GVPFR~AH~ivG~~V~~~~e~G~ 400 (469)
T TIGR00838 321 QEDKEPLFDAVKTVELSLEVMTGMLDTIKVNKERMEEAASAGFSNATDLADYLVRKRGVPFREAHHIVGELVATAIERGK 400 (469)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 13783678899999999999999983081587899998644887078899999834799806778999999999997278
Q ss_pred --------CHHHCCHHHHHHHHHCCCHH-HHHHCCHHHHHHHCCCCCCCCH---HHHHHHHHHHHHHHH
Q ss_conf --------96898999999400113268-9996599999962148999998---999999999999999
Q gi|254780370|r 411 --------ELAKLPLAMLQQISPVITSA-VYDILKVESSISSRKSFGGTCA---AEVLKQVTYWRNRIQ 467 (473)
Q Consensus 411 --------~l~el~~~~~~~~~~~~~~d-i~~~ldp~~~v~~R~s~GGtap---~~V~~~i~~~r~~L~ 467 (473)
.|.|+++++++++++.+++| |+++|||+.+|++|.++||||| ++|+++|+.+|.+|+
T Consensus 401 ~PGd~~~~~L~~lt~ee~~~~~~~~~ed~v~~~L~~~~~V~~R~~~GGtapGrv~~V~~~I~~aK~~l~ 469 (469)
T TIGR00838 401 SPGDVDASGLEELTLEELQKFSEEFEEDKVYEALDPEESVEKRDAYGGTAPGRVEEVEKAIEEAKARLA 469 (469)
T ss_pred CCCCCCCCHHHHCCHHHHHHHCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999865101231367999974213573357774287999970257887881069999999999987509
No 2
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=0 Score=1114.98 Aligned_cols=457 Identities=46% Similarity=0.754 Sum_probs=450.4
Q ss_pred HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCE-ECCCCC
Q ss_conf 3203323843469999842550789999999999999999999987999989999999999999966645980-015664
Q gi|254780370|r 12 QMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSF-VFSRDL 90 (473)
Q Consensus 12 ~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~-~~~~~~ 90 (473)
+||||||++++++.+.+|+.|++||++|++|||.+++||+.||.++|||++++.++|.++|++|..++..|.+ .+.++.
T Consensus 2 ~LWgGRF~~~~~~~~~~fn~Si~fD~rL~~~DI~gSiAHa~mL~~~gIlt~~E~~~I~~gL~~I~~ei~~~~~~~~~~~~ 81 (614)
T PRK12308 2 ALWGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELALNELKLEVMEDPEQILLSDA 81 (614)
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 96445579971399998668777889999999877799999998779989999999999999999999839933589985
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 63799999999731110234201441011237887999999999999867788999997447730145200166530113
Q gi|254780370|r 91 EDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQ 170 (473)
Q Consensus 91 edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~ 170 (473)
||||++||+.|++++|++|||+||||||||||+|++|||+|+.+..+...+..|+++|+++|++|.+++||||||+|+||
T Consensus 82 EDIH~~IE~~L~e~iG~~G~KLHTgRSRNDQVatd~RL~~r~~~~~i~~~l~~L~~~l~~~Ae~~~~~iMPGYTHLQ~AQ 161 (614)
T PRK12308 82 EDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQ 161 (614)
T ss_pred CCCHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
T ss_conf 34408999999998615446210246789999999999999999999999999999999999976798257865664421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 34445678888887862069899987454233565320335666789989631038764347856730278864246777
Q gi|254780370|r 171 PVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSH 250 (473)
Q Consensus 171 P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~ 250 (473)
|+|||||+++|+++|.||.+||.++++|+|+||||+||++||+|||||+++|++|||++|..||+|+|++|||++|++++
T Consensus 162 Pvt~~H~llAy~e~l~RD~~RL~d~~~r~n~~PLGsgAlAGT~~pIDR~~tA~~LGF~~~~~NSlDAVSdRDf~~E~l~~ 241 (614)
T PRK12308 162 PVTFAHWCLAYVEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSV 241 (614)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 11399999999999999999999999985759754313468989879999999759998667888898725899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH
Q ss_conf 68876648999999999841245615404554565300444336013899876689997523358767404840000100
Q gi|254780370|r 251 SAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDM 330 (473)
Q Consensus 251 l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDl 330 (473)
+++++++|||||+|+++|+|+|||||+|||+|+|||||||||||||++|++|||++++.|+++++++++||+|++||||+
T Consensus 242 ~s~~m~hLSRlaEdlIlwsS~EFgfi~L~D~~sTGSSIMPQKKNPDv~ELiRGK~Grv~G~L~~lLt~mKgLPlaYNkDl 321 (614)
T PRK12308 242 ASISMLHLSRLAEDLIFYNSGESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYNKDM 321 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 99999999999999999837036848706655445555777779868999887753245389999999766842113143
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10055798899999986567652305866652101211237844399999999985399979999999999999998298
Q gi|254780370|r 331 QEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQC 410 (473)
Q Consensus 331 q~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~ 410 (473)
||||+++|++++++..|+.++++++++++||+++|++.+..||++|||+|||||+ +|+|||+||||||++|..|+++|+
T Consensus 322 QEDKe~lfda~dt~~~~l~~~~~m~~~l~~n~e~m~~aa~~gf~~ATdlADyLV~-kGvPFReAH~ivG~~V~~a~~~g~ 400 (614)
T PRK12308 322 QEDKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVA-KGIPFREAHHIVGVAVVGAIAKGC 400 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 2001787768999999999999987438378999998853585028999999998-799788889999999999998199
Q ss_pred CHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 96898999999400113268999659999996214899999899999999999999985
Q gi|254780370|r 411 ELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNI 469 (473)
Q Consensus 411 ~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~~~ 469 (473)
+|.+|++++++.++|.|++|++++|+++++|++|+++|||+|++|+.+|++++++|++-
T Consensus 401 ~L~~L~L~e~q~~s~~i~~DVy~~L~~e~~v~~R~~~GGtap~qV~~ai~~a~~rl~~~ 459 (614)
T PRK12308 401 ALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCALGGVSPEQVAYAVKQAKKRLAAR 459 (614)
T ss_pred CHHHCCHHHHHHHCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 70008899998756022367988708998998723889999899999999999998725
No 3
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=1068.43 Aligned_cols=457 Identities=56% Similarity=0.887 Sum_probs=453.2
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 33320332384346999984255078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
+++||||||++++++.+..|+.|++||++|++|||.+++||+.||.++|||+++++++|+++|.+|.+++..|+|.+++.
T Consensus 2 ~~~lwggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~Ah~~mL~~~Gii~~ee~~~Il~~L~~l~~e~~~g~~~~~~~ 81 (459)
T COG0165 2 SNKLWGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEGLEELLEEIRAGKFELDPD 81 (459)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 98777887667876799998245026799999999875999999998699889999999999999999875488657986
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 46379999999973111023420144101123788799999999999986778899999744773014520016653011
Q gi|254780370|r 90 LEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTA 169 (473)
Q Consensus 90 ~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A 169 (473)
+||||++||+.|++++|+.||||||||||||||+|++|||+|+.+..|...+..|+++|+++|++|.+|+||||||+|+|
T Consensus 82 ~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~A 161 (459)
T COG0165 82 DEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRA 161 (459)
T ss_pred CCCHHHHHHHHHHHHHHHHHCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 01089999999999974422200024563389999999999999999999999999999999998068746785446535
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHH
Q ss_conf 33444567888888786206989998745423356532033566678998963103876434785673027886424677
Q gi|254780370|r 170 QPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLS 249 (473)
Q Consensus 170 ~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~ 249 (473)
||+|||||+++|+++|.||.+|+.++++|+|+||||+||++||+|||||+++|++|||+.+.+||+|+|++|||++|+++
T Consensus 162 QPvtf~H~llay~~~l~RD~~Rl~d~~~rvn~sPLGagAlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~ 241 (459)
T COG0165 162 QPVTFAHHLLAYAEMLARDIERLRDALKRVNVSPLGAGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLS 241 (459)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHH
T ss_conf 76849999999999999899999999987435986434567899988989999883981332173456652799999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
Q ss_conf 76887664899999999984124561540455456530044433601389987668999752335876740484000010
Q gi|254780370|r 250 HSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKD 329 (473)
Q Consensus 250 ~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rD 329 (473)
++++++++|||||+|+++|+|.|||||+|||+|+|||||||||||||++|++||+++++.|+++++++++||+|++||||
T Consensus 242 ~~a~~~~~LSRlaedlI~wss~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lPlaYnrD 321 (459)
T COG0165 242 AAALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRD 321 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 99999999999999999870546762767855555666688888986899987755426989999999980686512477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 01005579889999998656765230586665210121123784439999999998539997999999999999999829
Q gi|254780370|r 330 MQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQ 409 (473)
Q Consensus 330 lq~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g 409 (473)
+|++|+++|++++.+..++.++++++++|+||+++|++.+..||++|||+|||||+ +|+|||+||++||++|+.+.+.|
T Consensus 322 lQedke~lfds~~t~~~~l~~~~~mv~~l~vn~e~~~~a~~~gfs~aTdlAd~lv~-kGvPFReAh~ivG~~v~~~~~~~ 400 (459)
T COG0165 322 LQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAEAGFSTATDLADYLVR-KGVPFREAHEIVGEAVRRAEERG 400 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 78633889999999999999999987217457888998764362058999999987-69987999999999999998749
Q ss_pred CCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8968989999994001132689996599999962148999998999999999999999
Q gi|254780370|r 410 CELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQ 467 (473)
Q Consensus 410 ~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~ 467 (473)
+.+.++++++++.+++.+++|++++|+|+.+|++|.++|||+|++|+++|+.++..++
T Consensus 401 ~~l~~l~~~~~~~~~~~~~~dv~~~l~~~~~v~~R~~~Ggtap~~v~~~i~~~~~~l~ 458 (459)
T COG0165 401 KDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNSEGGTAPEEVREAIARAKARLA 458 (459)
T ss_pred CCHHHCCHHHHHHHCCCCCHHHHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9877502788863132211689998466999987204699988999999999997634
No 4
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=1066.08 Aligned_cols=453 Identities=46% Similarity=0.738 Sum_probs=446.4
Q ss_pred HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEC-CCCC
Q ss_conf 320332384346999984255078999999999999999999998799998999999999999996664598001-5664
Q gi|254780370|r 12 QMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF-SRDL 90 (473)
Q Consensus 12 ~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~-~~~~ 90 (473)
|||||||++++++.+.+|++|+++|++|++|||++++||+.||.++|||+++++++|.++|++|..++..|.+.+ ++++
T Consensus 2 ~lW~gRf~~~~~~~~~~~~~Si~~D~~L~~~Di~~s~AH~~mL~~~gil~~~e~~~I~~~L~~i~~~~~~g~~~~~~~~~ 81 (455)
T PRK04833 2 ALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSIAWSKALVTVGVLTADEQQQLEEALNELLEEVRANPQQILASDA 81 (455)
T ss_pred CCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 97655778984599998757788899999999998999999999889989999999999999999999859910389997
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 63799999999731110234201441011237887999999999999867788999997447730145200166530113
Q gi|254780370|r 91 EDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQ 170 (473)
Q Consensus 91 edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~ 170 (473)
||||++||++|++++|++|||||||||||||++|++||++|+++..+...+..|+++|+++|++|.+|+||||||+||||
T Consensus 82 EDiH~~IE~~L~e~~G~~ggklHtgRSRNDqv~t~~rL~~r~~l~~l~~~l~~L~~~l~~~A~~~~~~impGyTHlQ~Aq 161 (455)
T PRK04833 82 EDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAENNQDAVMPGYTHLQRAQ 161 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCE
T ss_conf 55489999999999743787863257788899999999999999999999999999999999976698443754454314
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 34445678888887862069899987454233565320335666789989631038764347856730278864246777
Q gi|254780370|r 171 PVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSH 250 (473)
Q Consensus 171 P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~ 250 (473)
|+|||||+++|+++|.||.+||.++++++|+||||+||++||+||+||+++|++|||++|..||+|+|++||+++|++++
T Consensus 162 P~t~gh~l~a~~~~l~rd~~rL~~~~~r~n~~PLGa~A~aGT~~pidR~~~A~~LGF~~~~~Nsldavs~rD~~~e~~~~ 241 (455)
T PRK04833 162 PVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGSGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSA 241 (455)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHH
T ss_conf 41099999999999999999999899873427541232169876665999998849986453579999743299999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH
Q ss_conf 68876648999999999841245615404554565300444336013899876689997523358767404840000100
Q gi|254780370|r 251 SAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDM 330 (473)
Q Consensus 251 l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDl 330 (473)
+++++++|+|||+|+++|+|+||||++|||+|++|||||||||||+++|++||++++++|++++++.++||+|++||||+
T Consensus 242 ~a~~~~~LsRiaeDlil~ss~efg~i~l~d~~~tGSSIMPQKkNPd~lEliRgka~~v~G~l~~ll~~~k~lP~~ynrDl 321 (455)
T PRK04833 242 ASISMVHLSRFAEDLIFFNSGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAYNKDM 321 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 99999999999999999825678848727766787888755569738999987677886799999999758986344316
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 10055798899999986567652305866652101211237844399999999985399979999999999999998298
Q gi|254780370|r 331 QEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQC 410 (473)
Q Consensus 331 q~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~ 410 (473)
|++|+++|++++.+..++.++..++++++||+++|++.+..+|++|||+||+||+ +|+|||+||++||++|+.|+++|+
T Consensus 322 qedk~~l~~a~~~~~~~l~l~~~~i~~l~~n~~~~~~~~~~~~~~ATdlAd~LV~-~GvpFR~AH~ivg~lV~~~~~~~~ 400 (455)
T PRK04833 322 QEDKEGLFDALDTWLDCLHMAALVLDGIQVNRPRCQEAAQQGYANATELADYLVA-KGVPFREAHHIVGEAVVEAIRQGK 400 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 6637889999999999999999999863568178998761473309999999998-599889999999999999998399
Q ss_pred CHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 9689899999940011326899965999999621489999989999999999999
Q gi|254780370|r 411 ELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNR 465 (473)
Q Consensus 411 ~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~ 465 (473)
++.++++++++++++.+++|++++|||+++|++|+++|||+|++|++||+++|++
T Consensus 401 ~l~~l~~~~~~~~~~~~~~dv~~~ld~~~~v~~R~~~Ggtap~~V~~~i~~~k~r 455 (455)
T PRK04833 401 PLEDLPLAELQKFSAVIGDDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAAAKAR 455 (455)
T ss_pred CHHHCCHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9354999999976201348999868999999865589999899999999998529
No 5
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=1040.60 Aligned_cols=457 Identities=59% Similarity=0.912 Sum_probs=451.9
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 33320332384346999984255078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
++|||||||++++++.+.+|++|+++|++|++|||++++||+.||.++|||+++++++|+++|.+|..++..|.|.++++
T Consensus 3 ~~~lW~gr~~~~~~~~~~~~~~s~~~D~~l~~~di~~s~AH~~~L~~~gil~~~e~~~I~~~L~~i~~~~~~g~~~~~~~ 82 (459)
T PRK00855 3 SNKLWGGRFSEGPDALVERFTASISFDKRLAEEDIAGSIAHATMLAKQGILSEEEAEKILAGLDEILAEIEAGEFEFSVE 82 (459)
T ss_pred CCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 75553768899853999998466988999999999989999999998799899999999999999998775498767887
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 46379999999973111023420144101123788799999999999986778899999744773014520016653011
Q gi|254780370|r 90 LEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTA 169 (473)
Q Consensus 90 ~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A 169 (473)
+||||++||++|++++|++|||||+|||||||++|++||++|+.+..+...+..|+++|+++|++|.+|+||||||+|||
T Consensus 83 ~EDih~~iE~~L~e~~G~~g~~lH~gRSRNDqv~t~~rL~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpGyTHlQ~A 162 (459)
T PRK00855 83 LEDIHMAIEARLTERIGDAGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLDQAEEHADTIMPGYTHLQRA 162 (459)
T ss_pred CCCHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC
T ss_conf 54289999999999847305231667778889999999999999999999999999999999997569870066566402
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHH
Q ss_conf 33444567888888786206989998745423356532033566678998963103876434785673027886424677
Q gi|254780370|r 170 QPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLS 249 (473)
Q Consensus 170 ~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~ 249 (473)
||+|||||+++|+++|.||.+||.++++|+|+||||+||++||+||+||+++|++|||++|..||+|+|++||+++|+++
T Consensus 163 qP~T~g~~l~a~~~~l~rd~~rl~~~~~r~~~~pLG~~A~~Gt~~~idr~~~a~~LGf~~~~~ns~davs~rd~~~e~~~ 242 (459)
T PRK00855 163 QPVTFGHHLLAYAEMLARDLERLRDARKRVNRSPLGAAALAGTSFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLS 242 (459)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHH
T ss_conf 45119889999999999999999988876300755533455788777768999980998655660776732538999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
Q ss_conf 76887664899999999984124561540455456530044433601389987668999752335876740484000010
Q gi|254780370|r 250 HSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKD 329 (473)
Q Consensus 250 ~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rD 329 (473)
++++++++|+|||+|+++|+++|||+|++||+|++|||||||||||+++|++||++++++|++++++.+++|+|++||||
T Consensus 243 ~la~~~~~LsRia~Dl~l~ss~e~g~v~l~d~~~~GSSiMPqKrNP~~lEliR~~~~~~~G~l~~ll~~~~~lp~~y~rD 322 (459)
T PRK00855 243 AASLLMVHLSRLAEELILWSSPEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGHLTGLLTVMKGLPLAYNKD 322 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCC
T ss_conf 99999999999999999982865685751788899798875666960899999999999868889999982896032001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 01005579889999998656765230586665210121123784439999999998539997999999999999999829
Q gi|254780370|r 330 MQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQ 409 (473)
Q Consensus 330 lq~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g 409 (473)
+|++++++|++++.+..++.+++.++++++||++||++++.+++++||++||+||+ +|+|||+||++||++|+.|.++|
T Consensus 323 lQe~k~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~AtdlAd~Lv~-~GipFR~AH~iV~~~v~~a~~~~ 401 (459)
T PRK00855 323 LQEDKEPLFDAVDTLKLSLEAFAGMLETLTVNKERMREAAEKGFSTATDLADYLVR-KGVPFRDAHEIVGKAVKEAEERG 401 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 88778888899999999999999886030227999999885483079999999998-69988999999999999999819
Q ss_pred CCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8968989999994001132689996599999962148999998999999999999999
Q gi|254780370|r 410 CELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQ 467 (473)
Q Consensus 410 ~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~ 467 (473)
+++.+++.++++.+++.+++|+++++||+++|++|+++|||+|++|++||++++++|.
T Consensus 402 ~~l~el~~~~~~~~~~~~~~~i~~~ldp~~~v~~r~~~Gg~ap~~v~~~i~~~~~~L~ 459 (459)
T PRK00855 402 VDLADLSLEELQAFSPLIEEDVYEVLTPEGSVAARNSIGGTAPEQVREQIARAKARLA 459 (459)
T ss_pred CCHHHCCHHHHHHHCHHHHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9967689999987640025999986799999986548999989999999999998609
No 6
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=1000.08 Aligned_cols=450 Identities=28% Similarity=0.442 Sum_probs=432.7
Q ss_pred HHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHH
Q ss_conf 469999842550789---99999999999999999998799998999999999999996664598001566463799999
Q gi|254780370|r 22 PSWIMEKINVSIDFD---KKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIE 98 (473)
Q Consensus 22 ~~~~~~~~~~s~~~D---~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE 98 (473)
|++...+...+..|+ .+++++++++++||+.||+++|||+++++++|+++|++| .++..++|.+++++||||++||
T Consensus 17 p~~~y~~~vL~~~f~~~~~~l~~~~~~in~AH~~ML~~~gIi~~~ea~~I~~gL~~i-~~~~~~~~~~~~~~EDih~~iE 95 (502)
T PRK06705 17 PGKTYVDCVLQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHALKKV-EEIPEEQLLYTEQHEDLFFLVE 95 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHH
T ss_conf 828999998326689999998898988999999999887998999999999999999-8765399526996320589999
Q ss_pred HHHHHHH-HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9997311-102342014410112378879999999999998677889999974477301452001665301133444567
Q gi|254780370|r 99 ARLTSLI-GSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHH 177 (473)
Q Consensus 99 ~~l~~~~-G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~ 177 (473)
++|++++ ||+|||||||||||||++|++||++|+.+..+...+..|+++|+++|++|.+|+||||||+|||||+|||||
T Consensus 96 ~~L~~~~ggd~ggklHtgRSRNDqvat~~Rl~~R~~l~~i~~~l~~l~~~l~~~A~~~~~timPgYTHlQ~AQP~t~gh~ 175 (502)
T PRK06705 96 HLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHY 175 (502)
T ss_pred HHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECHHHHH
T ss_conf 99999847451031555478889999999999999999999999999999999999756863236444631101069899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88888878620698999874542335653203356667899896310387643478567302788642467776887664
Q gi|254780370|r 178 CMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMH 257 (473)
Q Consensus 178 l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~ 257 (473)
+++|+++|.||.+||.++++|+|+||||+||++||+|||||+++|++|||++|..||+|+|++|||++|+++++++++++
T Consensus 176 l~a~~~~l~RD~~Rl~~~~~r~n~sPLGa~AlaGt~~piDR~~~A~lLGF~~~~~NS~davs~rD~~~e~~~~~s~~~~~ 255 (502)
T PRK06705 176 TLAIYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTN 255 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999850487310012578887788999987799987600399886336999999999999877
Q ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHH-
Q ss_conf 8999999999841245615404554565300444336013899876689997523358767404840000100100557-
Q gi|254780370|r 258 MSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEP- 336 (473)
Q Consensus 258 l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~- 336 (473)
|||||+|+++|+|+|||||++||+|++|||||||||||+++|++||++++++|+++++++++||+|++||+|+|+++.+
T Consensus 256 LsRlaedlilwss~Ef~fi~l~d~~~tgSSIMPQKkNPd~lEliRgkag~v~G~l~~ll~~~kglP~~yn~D~qed~~~~ 335 (502)
T PRK06705 256 TSRWIHDFLLLATKEYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTEDDLQPY 335 (502)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 99999999999711579487078655666778867698389999999888888999999997589852242003120157
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 98899999986567652305866652101211237844399999999985399979999999999999998298968989
Q gi|254780370|r 337 VFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLP 416 (473)
Q Consensus 337 l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~ 416 (473)
+|++++.+..++.++.+++++++||+++|++.+..+|++|||+||+||+++|+|||+||++||++|+.|+++|+.+.+++
T Consensus 336 l~~a~~~~~~~l~l~~~~i~~l~~n~~~m~~~~~~~~~~ATdlAD~LVr~~gipFR~AH~ivg~~V~~a~~~~~~l~~l~ 415 (502)
T PRK06705 336 LYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYKHAITITDFADVLTKNYGIPFRHAHHAASVIANMSLEQKKELHELC 415 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 89999999999999999885380379999998754971399999999983598988999999999999997599913289
Q ss_pred HHHHHHHH------HCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999400------113268999659999996214899999899999999999999985612
Q gi|254780370|r 417 LAMLQQIS------PVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKK 472 (473)
Q Consensus 417 ~~~~~~~~------~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~~~~~~ 472 (473)
+++++.+. +.++++++++|||+++|++|+++|||+|++|++||+.+++.|++.++.
T Consensus 416 ~~~~~~~~~~~~~~~l~e~~i~~aLdp~~~V~~R~~~GGpap~~v~r~I~~~~~~l~~~~~~ 477 (502)
T PRK06705 416 FKDVNIYLQEKFKIQLLEKEWEEIISPEAFIQKRNVYGGPSKKEMERMINNRKELFRKEEEV 477 (502)
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998740467989999998669999998734899998999999999999999999999
No 7
>KOG1316 consensus
Probab=100.00 E-value=0 Score=962.36 Aligned_cols=460 Identities=46% Similarity=0.748 Sum_probs=452.9
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 02333203323843469999842550789999999999999999999987999989999999999999966645980015
Q gi|254780370|r 8 NEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFS 87 (473)
Q Consensus 8 ~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~ 87 (473)
.+..|||||||+++++|.+..|+.|+++|++||+.||.+++||+.+|.+.|+|++++.++|+++|.+|+.+|..|+|++.
T Consensus 3 ~~~~KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~i~~ew~~~kf~~~ 82 (464)
T KOG1316 3 SSSQKLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEKIRREWAAGKFKLN 82 (464)
T ss_pred CCCHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEC
T ss_conf 31022325636788877999864347530688876405449999999875887688899999779999999864946867
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 66463799999999731110234201441011237887999999999999867788999997447730145200166530
Q gi|254780370|r 88 RDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167 (473)
Q Consensus 88 ~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q 167 (473)
|..||||+++|+.|.|.+|+.||++||||||||||.|++|||+|+++..+...+..|++++.++|+.+.|++||||||+|
T Consensus 83 p~dEDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHLQ 162 (464)
T KOG1316 83 PNDEDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHLQ 162 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHH
T ss_conf 88134566789999998755643113576555336789999999999999999999999999998624472225716665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHH
Q ss_conf 11334445678888887862069899987454233565320335666789989631038764347856730278864246
Q gi|254780370|r 168 TAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILEC 247 (473)
Q Consensus 168 ~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~ 247 (473)
.|||+-|.||+++|+..|.||..||.+++.|+|++|||+||+||++|+|||+++++.|||.++..||++||++|||++||
T Consensus 163 RAQpvrwsH~LlSha~~l~~D~~Rl~q~~~R~n~~PLGagALAGnpl~iDR~~la~~LgF~~v~~NSm~AvsDRDFVvef 242 (464)
T KOG1316 163 RAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLNQLPLGAGALAGNPLGIDREFLAEELGFEGVIMNSMDAVSDRDFVVEF 242 (464)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCCCHHHHHH
T ss_conf 41673028999998999876788999999874248753211038987736899997558753001001101440267999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHC
Q ss_conf 77768876648999999999841245615404554565300444336013899876689997523358767404840000
Q gi|254780370|r 248 LSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYS 327 (473)
Q Consensus 248 ~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~ 327 (473)
.+|.++++.|+||+|+|+++|++.|||||.++|+|++|||+||||||||.+|++||+++++.|.+++++.++||+|++||
T Consensus 243 ~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lSDaySTGSSlMPQKKNpDslELlRgksgrV~gdl~g~lmt~KG~PstYn 322 (464)
T KOG1316 243 LFWASMVMTHLSRLAEDLIIYSTKEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLKGLPSTYN 322 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHEEECCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCEEHHHHHHHHHHHCCCCCCCC
T ss_conf 99988999999987657603130114714301234567544777789977888635565433666878987267852013
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 10010055798899999986567652305866652101211237844399999999985399979999999999999998
Q gi|254780370|r 328 KDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEK 407 (473)
Q Consensus 328 rDlq~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~ 407 (473)
+|+||||+++|++++++..++.+.++++++++||+|+|.+.+..+ +.|||+|+|||+ ||+|||++|||+|++|..|++
T Consensus 323 kDlQeDKep~Fds~~tv~~~l~v~tgv~stltvn~e~m~~aLt~d-mlATdlA~YLVr-KGvPFRqtHhisG~~V~~ae~ 400 (464)
T KOG1316 323 KDLQEDKEPLFDSSKTVSDSLQVATGVISTLTVNQENMEKALTPD-MLATDLAYYLVR-KGVPFRQTHHISGKAVRMAEE 400 (464)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHCCCCH-HHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHH
T ss_conf 203420037776688999999999877545367788886405801-557689999997-589821555666889999998
Q ss_pred CCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 29896898999999400113268999659999996214899999899999999999999985
Q gi|254780370|r 408 NQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNI 469 (473)
Q Consensus 408 ~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~~~ 469 (473)
+|..+.+|+++++++++|+|++|+..+++.+++|++|+++||||...|.+||..+++.|..-
T Consensus 401 rg~~l~~LsledlqklsplF~eDv~~v~~ye~sVek~~a~GgTa~s~V~eQl~~~k~al~~a 462 (464)
T KOG1316 401 RGVTLDKLSLEDLQKLSPLFEEDVFCVFNYENSVEKRCAIGGTAKSCVLEQLRQLKKALLQA 462 (464)
T ss_pred CCCCCCCCCHHHHHHCCCCCCCCHHHHHCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 08870117799875127200011677605365688864237715789999999999998863
No 8
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains proteins similar to ASAL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotleic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication. In h
Probab=100.00 E-value=0 Score=944.93 Aligned_cols=435 Identities=57% Similarity=0.874 Sum_probs=430.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 50789999999999999999999987999989999999999999966645980015664637999999997311102342
Q gi|254780370|r 32 SIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGK 111 (473)
Q Consensus 32 s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~ 111 (473)
|+++|++|++|||++++||++||.++|||+++++++|.++|.+|..+...+.|+++++.||+|++||.+|++++|+.|||
T Consensus 1 s~~~d~~l~~~di~~~~AH~~mL~e~Gil~~~~a~~I~~al~~i~~~~~~~~~~~~~~~ed~~~~iE~~l~e~~g~~~~~ 80 (435)
T cd01359 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAGLAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIGDVGGK 80 (435)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCH
T ss_conf 94688999999999999999999987999999999999999999824525873257877861699999999987577461
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01441011237887999999999999867788999997447730145200166530113344456788888878620698
Q gi|254780370|r 112 MHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISR 191 (473)
Q Consensus 112 lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~r 191 (473)
||+|||||||++|++||++|+++..+.+.+..|+++|.++|++|+||+||||||+|||||+|||||+++|+++|.||.+|
T Consensus 81 iH~GrSrND~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~~~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~r 160 (435)
T cd01359 81 LHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLER 160 (435)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 03788788999999999999999999999999999999999974698712665662153522898999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99987454233565320335666789989631038764347856730278864246777688766489999999998412
Q gi|254780370|r 192 FFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTP 271 (473)
Q Consensus 192 L~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~ 271 (473)
|.++++++|+||||+||++||+||+||+++|++|||+.|.+|++|+|++||+++|+++++++++++|+|||+|+++|+|+
T Consensus 161 L~~~~~~~~~~plG~~A~~Gt~~~~dr~~~a~~LGf~~~~~ns~~av~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~ 240 (435)
T cd01359 161 LADAYKRVNVSPLGAGALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQ 240 (435)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99898664251345200368876777689999828997874678898704399999999999999999999999997066
Q ss_pred CCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45615404554565300444336013899876689997523358767404840000100100557988999999865676
Q gi|254780370|r 272 QFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAI 351 (473)
Q Consensus 272 e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~ 351 (473)
|||++++||+|++|||||||||||+.+|++|+++++++|++++++.+++|+|++|++|+|+++.++|++++.+..++.++
T Consensus 241 e~g~iel~~~~~~GSSiMPqKrNP~~~E~iR~~a~~~~g~~~~~~~~~~~~p~~~~~d~q~~~~~l~~~~~~~~~~l~~~ 320 (435)
T cd01359 241 EFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDTLIASLRLL 320 (435)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67857525999997988634569558999999999887799999999706840034547887676778999999999999
Q ss_pred HHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHH
Q ss_conf 52305866652101211237844399999999985399979999999999999998298968989999994001132689
Q gi|254780370|r 352 SAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAV 431 (473)
Q Consensus 352 ~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di 431 (473)
..++++++||+++|++.+..++++||++||+||+++|+|||+||++||++|+.|.++|+++.+++.++++...+..++++
T Consensus 321 ~~~l~~l~vn~~rm~~~~~~~~~~at~lA~~Lv~~~GipFR~AH~iV~~lv~~a~~~~~~l~el~~~~~~~~~~~~~~~i 400 (435)
T cd01359 321 TGVISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDV 400 (435)
T ss_pred HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHCCCCHHHH
T ss_conf 99885031079999998846811899999999998599889999999999999998199967668999964534788999
Q ss_pred HHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99659999996214899999899999999999999
Q gi|254780370|r 432 YDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRI 466 (473)
Q Consensus 432 ~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L 466 (473)
+++|||+++|++|++.|||+|++|+++|+++++.|
T Consensus 401 ~~~ldp~~~v~~r~~~Gg~ap~~v~~~i~~~~~~l 435 (435)
T cd01359 401 REALDPENSVERRTSYGGTAPAEVREQIARARALL 435 (435)
T ss_pred HHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 98679999997565899998999999999998419
No 9
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=917.69 Aligned_cols=414 Identities=22% Similarity=0.300 Sum_probs=383.6
Q ss_pred HHCCCCCCCCHHHHH--HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 320332384346999--984255078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 12 QMWGGRFSSSPSWIM--EKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 12 ~lW~grf~~~~~~~~--~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
|||||||++.+.... ..|+.|++||++|++|||++++||+.||.++|||+++++++|.++|.+|.+ +.|.++++
T Consensus 2 KlWgGrf~~~~~~~~~~~~~~~si~~D~~L~~~DI~gS~AHa~mL~~~giit~~e~~~I~~~L~~i~~----~~~~~~~~ 77 (434)
T PRK06389 2 KIWSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINALIDIYK----NGIEIDLD 77 (434)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC----CCCCCCCC
T ss_conf 98689999876305999885698788999999999876999999998799899999999999999990----99857998
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 46379999999973111023420144101123788799999999999986778899999744773014520016653011
Q gi|254780370|r 90 LEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTA 169 (473)
Q Consensus 90 ~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A 169 (473)
+||||++||++|++++|++|||+||||||||||+|++|||+|+.+..+...+.++++++++ .|.+++||||||+|+|
T Consensus 78 ~EDiH~~iE~~L~e~iGd~g~klHTgRSRNDQVatd~RL~lr~~~~~l~~~l~~l~~~l~~---~~~~~~mPGYTHlQ~A 154 (434)
T PRK06389 78 LEDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPG---FNLKGRLPGYTHFRQA 154 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCCCCCCCCCCCCC
T ss_conf 6555799999999997065431120356889999999999999999999999999999997---5416636774222324
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCC-HHHH
Q ss_conf 334445678888887862069899987454233565320335666789989631038764347856730278864-2467
Q gi|254780370|r 170 QPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFI-LECL 248 (473)
Q Consensus 170 ~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~-~e~~ 248 (473)
||+|||||+++|+++|.||.+||.++++++|+||||+||++||+|||||+++|++|||+++..||+|++++||+. .+++
T Consensus 155 QP~t~~h~l~a~~e~l~rD~~rL~~~~~r~n~~PLGsgA~aGt~~piDR~~~a~~LGF~~~~~Nsl~a~s~r~~~~~~~~ 234 (434)
T PRK06389 155 MPMTVNTYINYIKSILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENIS 234 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 01217899999999999999999999986144875300025888876889999982999765551888860089999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC
Q ss_conf 77688766489999999998412456154045545653004443360138998766899975233587674048400001
Q gi|254780370|r 249 SHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK 328 (473)
Q Consensus 249 ~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~r 328 (473)
+++++++++|||||+|+++|++. |||++||+|||||||||||||||++|++||++++++|++++++++++|+|++|||
T Consensus 235 ~~~s~~~~~LSRlaeDlilwss~--gfv~l~d~~~tGSSIMPQKkNPD~lELiRgk~g~v~G~l~~ll~~~kgLP~~Ynr 312 (434)
T PRK06389 235 YLISSLAVDLSRICQDIIIYYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGYHR 312 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC--CCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 99999999999999999998168--8487576443355668777798499999888877877999999998068651114
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 00100557988999999865676523058666521012112378443999999999853999799999999999999982
Q gi|254780370|r 329 DMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKN 408 (473)
Q Consensus 329 Dlq~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~ 408 (473)
|+|++|+++|++++.+..++.++++++++++||+++|+... +.+.||++|++|| ++|+|||+||++||++|+.++.-
T Consensus 313 DlQedKe~lfds~d~~~~~L~i~~~~i~~i~~~~~~~~~~~--~~~~ATd~A~~lv-~kGvPFReAh~ivG~~Vr~~e~l 389 (434)
T PRK06389 313 DFQIVKDSTISFINNFERILLGLPDLLYNIKFEITNEKNIK--NSVYATYNAWLAF-KNGMDWKSAYAYIGNKIREGEVL 389 (434)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHC--CCCCHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 66622088877999999999999999975881889998530--5553159999999-87998799999999999988875
Q ss_pred CCC----HHH-CCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 989----689-899999940011326899965999999
Q gi|254780370|r 409 QCE----LAK-LPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 409 g~~----l~e-l~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
..- +.+ +...+++ .++.+++.+++|..++
T Consensus 390 ~~~~~edl~d~l~~~~l~----~i~~~ik~~~~~~~~~ 423 (434)
T PRK06389 390 DEYQPEDLTDYIDVNELK----RINHNIKIIIEPREKL 423 (434)
T ss_pred CCCCHHHHHHHCCHHHHH----HHHHHHHHHHCHHHHH
T ss_conf 304737788650489897----6325578771689999
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=850.50 Aligned_cols=440 Identities=28% Similarity=0.380 Sum_probs=393.8
Q ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHH
Q ss_conf 46999984255---078999999999999999999998799998999999999999996664598001566463799999
Q gi|254780370|r 22 PSWIMEKINVS---IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIE 98 (473)
Q Consensus 22 ~~~~~~~~~~s---~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE 98 (473)
..+.+.+.... ...+-.++.+-..++.||++||.++||++.+.+..+++++..++... ...+.-.+.....|+++|
T Consensus 422 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~~ahl~ml~~~gi~~~~~~~~l~~~~~~l~~~~-~~~l~~~~~~rg~Yf~yE 500 (892)
T PRK02186 422 LPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDAHRRLRDAG-FAPLLARPAPRGLYMLYE 500 (892)
T ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCC-CHHHCCCCCCCCHHHHHH
T ss_conf 8978875633875333634555545221266757877627877788899999999877468-344306878863013789
Q ss_pred HHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 99973111-02342014410112378879999999999998677889999974477301452001665301133444567
Q gi|254780370|r 99 ARLTSLIG-SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHH 177 (473)
Q Consensus 99 ~~l~~~~G-~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~ 177 (473)
.+|++++| |+||++|||||||||++|.+|||+|+++..+...+..|+++|+++|++|.+|+||||||+|||||+|||||
T Consensus 501 ~~Lier~G~D~gG~LhtgRSRNDqvAT~~rl~lRd~~~~~~~~l~~L~~aL~~~Ae~~~~tvmPgyTHlQ~AQP~t~gH~ 580 (892)
T PRK02186 501 AYLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHY 580 (892)
T ss_pred HHHHHHHCHHHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 99999828011262520533446899999999999999999999999999999998633865236445765674129999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 88888878620698999874542335653203356667899896310387643478567302788642467776887664
Q gi|254780370|r 178 CMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMH 257 (473)
Q Consensus 178 l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~ 257 (473)
|++|.++|.||.+||.++++|+|+||||+||++||+|||||+++|++|||++|..||+|+|++|||++|+++++++++++
T Consensus 581 Lla~~~~l~RD~~Rl~~~~~r~n~~PLGa~AlaGT~~piDr~~tA~lLGF~~~~~NSlDavs~RDf~~e~~~~~a~~~~~ 660 (892)
T PRK02186 581 LLAVDGALARETHALFALFEHIDVCPLGAGAGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTV 660 (892)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 99999999859999999983236698520002589898698999998199875555312332118999999999999998
Q ss_pred HHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH-HHHHHH
Q ss_conf 8999999999841245615404554565300444336013899876689997523358767404840000100-100557
Q gi|254780370|r 258 MSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDM-QEDKEP 336 (473)
Q Consensus 258 l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDl-q~~~~~ 336 (473)
|||+++|+++|+|.|||||+|||+|++|||||||||||+++|++|||+++++|+++++++++|++|++||+|+ |+++++
T Consensus 661 lsRlaeel~lwss~efgfi~l~D~~~tgSSiMPQKkNPdvlElvRgKaGrviG~L~~lLt~lKglP~~yn~D~~~e~~~~ 740 (892)
T PRK02186 661 LSRLAQDLQLWTTREFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMNGP 740 (892)
T ss_pred HHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 88999999997232557487675454456667867697189997320000388999999986358763344312220026
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCC
Q ss_conf 98899999986567652305866652101211237844399999999985399979999999999999998298968989
Q gi|254780370|r 337 VFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLP 416 (473)
Q Consensus 337 l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~ 416 (473)
+|++++.+..++.+|..++.+++||+++|++.+..||++|||+||+||+++|+|||+||+|||++|+.++.+|....+-.
T Consensus 741 ~~da~d~~~~~L~l~~~~v~~~~~~~~rM~~aa~~gfstATdlAD~LVr~~GipFR~AH~iVG~~Vr~al~~g~~~~~~~ 820 (892)
T PRK02186 741 IAQACAAIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADAL 820 (892)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 89999999999999999984485089999998653871699999999986499878999999999999985599866789
Q ss_pred HHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999940011326899965999999621489999989999999999999998561
Q gi|254780370|r 417 LAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPK 471 (473)
Q Consensus 417 ~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~~~~~ 471 (473)
.+...++...+..+++..+- --|||+......++..++..|.+.+.
T Consensus 821 ~~~~~~~~~~~~~e~~~~~~---------fg~gp~~~~~~~~l~~~~~~~~~~~~ 866 (892)
T PRK02186 821 AALDPQFVSRAPLEWARSHR---------FGGGPGAADLNAGLARACAALRDDEA 866 (892)
T ss_pred HHHCCCCCCCCCHHHHHHHH---------HCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87352422248767888865---------06899853212348999999875699
No 11
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=0 Score=637.02 Aligned_cols=418 Identities=22% Similarity=0.221 Sum_probs=363.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH-CCCCCCCC
Q ss_conf 99999999999999999999879999899999999999999666459800156646379999999973111-02342014
Q gi|254780370|r 36 DKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIG-SIAGKMHT 114 (473)
Q Consensus 36 D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G-~~~~~lH~ 114 (473)
|...+.+-+.++.|.+.++++.|+||+++++.|.+++.....+...-.........|| .++++++.+.++ +.|+|+|+
T Consensus 21 e~~~~~~~l~vE~ala~a~~~~g~ip~~~a~~i~~~~~~~~~d~~~i~~~e~~~~hdv-~a~v~~l~e~~~~~~~~~vH~ 99 (449)
T PRK08540 21 EENKLQKMLEVEAALARAEAELGMIPKEAAEEINEKASTKSVKLERVKEIEAEIHHDI-MAVVKAISEVCEGDAGEYVHF 99 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCH-HHHHHHHHHHCCHHHHCCEEC
T ss_conf 8999999999999999999874999999999999864544478999999999848982-999999998644240030442
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41011237887999999999999867788999997447730145200166530113344456788888878620698999
Q gi|254780370|r 115 ARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFD 194 (473)
Q Consensus 115 grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~ 194 (473)
|+|||||++|+++|++|+++..+.+.|..+++.|.++|++|+||+||||||+|||||+||||++++|+++|.|+.+||.+
T Consensus 100 G~Ts~Di~dTa~~L~~~~~~~~i~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~ 179 (449)
T PRK08540 100 GATSNDIIDTATALQLKDSLDILEEKLKTLLGVLLDKAEEHKNTVCIGRTHGQHAVPTTYGMKFAIWASEIQRHIERLEQ 179 (449)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87788789889999999999999999999999999999982698620567884103316999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC----CHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8745423356532033566678----998963103876434785673027886424677768876648999999999841
Q gi|254780370|r 195 SIERLDECPLGAAALAGTSFPI----DRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST 270 (473)
Q Consensus 195 ~~~~~~~~pLG~~A~~GT~~~i----dr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss 270 (473)
++++++.+|+|++.|++..++- .++.+++.|||..+..+ +.+.+||+++|+++++++++++|+|||+|+++|++
T Consensus 180 ~~~~~~~~~~~GAvGt~a~~~~~~~~~~~~~~~~Lgl~~~~~~--~~~~~rd~~~e~~~~l~~ia~~l~kia~Di~~l~~ 257 (449)
T PRK08540 180 LKPRVCVGQMTGAVGTQAAFGEKGIEIQKRVMEILGLGPVDIS--NQVIQRDRHAEFMMFLANIASTLDKIGLEIRSLQR 257 (449)
T ss_pred HHHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998874123587664001697459999999998389977864--32123007999999999987369999999999752
Q ss_pred CCCCCEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 245615404-554565300444336013899876689997523358767404840000100100---5579889999998
Q gi|254780370|r 271 PQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQED---KEPVFDALETLQI 346 (473)
Q Consensus 271 ~e~~~i~l~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~---~~~l~~ai~~~~~ 346 (473)
+|||++..| ++.++|||||||||||+.+|.++|.+..+.++... .+.+.|++|+||++++ +..+++++..+..
T Consensus 258 ~e~ge~~e~~~~~~~GSS~MPhK~NPv~~E~i~gla~~~~~~~~~---~l~~~~~~~erDl~~~~~e~~~l~~~~~l~~~ 334 (449)
T PRK08540 258 TEIGEVEESFGKKQVGSSTMPHKRNPITSEQVCGLARVVRSNVEP---ALLNNPLWDERDLTNSSCERVIFPESCVLTDH 334 (449)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 345703047899997138889872854689899999999988899---87257410010101247888867999999999
Q ss_pred HHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHH
Q ss_conf 656765230586665210121123--784439999999998539997999999999999999829896898999999400
Q gi|254780370|r 347 IILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQIS 424 (473)
Q Consensus 347 ~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~ 424 (473)
++..+..++++++||+++|++++. .++++++.++.+|++ +|+|||+||++|+++++.|.++|+++.|+.+++.....
T Consensus 335 ~l~~~~~~l~~l~vn~erm~~nl~~~~~~i~ae~l~~~L~~-~glg~~~Ahe~v~~~a~~A~~~g~~l~e~~l~~~~~~~ 413 (449)
T PRK08540 335 ILKLMIKVLEGLEFNPENIRRNLELTKGLNMAERVMIELAK-RGMGRQEAHELVRQAAMKAFEEGRHLKEVLLEEPEVMK 413 (449)
T ss_pred HHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHC
T ss_conf 99999987751835699999998855177668999999998-59987999999999999999969989999865855316
Q ss_pred HCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 1132689996599999962148999998999999999999999
Q gi|254780370|r 425 PVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQ 467 (473)
Q Consensus 425 ~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~ 467 (473)
...++|+.++|||++++ |.+|+.|+++++++|++.+
T Consensus 414 ~l~~~el~~lldP~~yi-------G~A~~~v~~vl~~~~~~~~ 449 (449)
T PRK08540 414 YLTEEEIEELLDPETYI-------GTAPEIVENVIEKLREWEK 449 (449)
T ss_pred CCCHHHHHHHCCHHHHC-------CCHHHHHHHHHHHHHHHHC
T ss_conf 89999999866998716-------8489999999999998749
No 12
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase_1: Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=0 Score=619.63 Aligned_cols=370 Identities=24% Similarity=0.289 Sum_probs=323.2
Q ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 22320233320332384346999984255078999999999999999999998799998999999999999996664598
Q gi|254780370|r 4 KIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGS 83 (473)
Q Consensus 4 ~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~ 83 (473)
||.++||.++|+ |...+.+.++++.|++.++++.|+||++++++|.++++.-..++....
T Consensus 1 Ry~~~em~~ifs--------------------d~~~~~~~l~vE~AlA~aqa~~G~Ip~~aa~~I~~~~~~d~~~i~~~e 60 (387)
T cd01360 1 RYGRPEMKKIWS--------------------EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKFDVERVKEIE 60 (387)
T ss_pred CCCCHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 999689998809--------------------699999999999999999987799999999999986658999999999
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 00156646379999999973111023420144101123788799999999999986778899999744773014520016
Q gi|254780370|r 84 FVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGF 163 (473)
Q Consensus 84 ~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~ 163 (473)
.....|| +++++.|.+++|+.|+|+|+|+|||||++|+++|++|+++..+.+.|..++++|.++|++|++|+||||
T Consensus 61 ---~~~~hdv-~a~v~~l~e~~g~~~~~iH~G~TsqDivdTa~~L~lk~a~~~i~~~l~~l~~~L~~lA~~~~~t~m~gr 136 (387)
T cd01360 61 ---AETKHDV-IAFVTAIAEYCGEAGRYIHFGLTSSDVVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGR 136 (387)
T ss_pred ---HHHCCCH-HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf ---8849983-999999998664010612317757419989999999976999999999999999999998127740125
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHCCCCCCCCCHHHHCCCCC
Q ss_conf 653011334445678888887862069899987454233565320335666789-9896310387643478567302788
Q gi|254780370|r 164 THLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID-RHFTAKELGFREPTRNSIDSVSDRD 242 (473)
Q Consensus 164 TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id-r~~~a~~LGf~~~~~ns~dav~sRd 242 (473)
||+|||||||||||+++|+++|.|+.+||.+++++++++|+|++++++++++.+ ++++|+.|||..+..++ ++++||
T Consensus 137 TH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lgGAvGt~a~~~~~~~~~~a~~LGl~~~~~~~--~~~~Rd 214 (387)
T cd01360 137 THGIHAEPTTFGLKFALWYAEFKRHLERLKEARERILVGKISGAVGTYANLGPEVEERVAEKLGLKPEPIST--QVIQRD 214 (387)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCC--CCCCCH
T ss_conf 325644235399999999999999999999999988420446421035669979999999980999776542--221538
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 6424677768876648999999999841245615404-554565300444336013899876689997523358767404
Q gi|254780370|r 243 FILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKG 321 (473)
Q Consensus 243 ~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~ 321 (473)
+++|+++++++++.+|+|||+|+++|+++|||++..| +..++|||||||||||+.+|+++|++..+.|.. ..++++
T Consensus 215 ~~~e~~~~l~~i~~~l~kia~Di~~l~~~e~~el~e~f~~~~~GSS~MPhK~NP~~~E~i~~lar~~~~~~---~~~~~~ 291 (387)
T cd01360 215 RHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEPFSKGQKGSSAMPHKRNPILSENICGLARVIRSNV---IPALEN 291 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH---HHHHHC
T ss_conf 99999999999998999999999998742101622246899970487776617588899999999999999---999704
Q ss_pred CCCHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 840000100100---5579889999998656765230586665210121123--78443999999999853999799999
Q gi|254780370|r 322 LPLAYSKDMQED---KEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLPFREAHY 396 (473)
Q Consensus 322 ~p~~~~rDlq~~---~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~GipFReAH~ 396 (473)
+|.+|+||++++ |..+++++..+..++..+..++++++||+++|++++. .|+++|++++++||. +|+|||+||+
T Consensus 292 ~~~~~eRDl~~~~~e~~~lp~~~~~~~~~L~~~~~ll~~L~v~~~~M~~nl~~~~g~~~ae~~~~~Lv~-~G~~r~~Ah~ 370 (387)
T cd01360 292 VALWHERDISHSSVERVILPDATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVE-KGMSREEAYE 370 (387)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHH
T ss_conf 655343554124777754788999999999999999854889899999998604786799999999987-7998899999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q gi|254780370|r 397 ITGCTVS 403 (473)
Q Consensus 397 iVg~lV~ 403 (473)
+|++-+.
T Consensus 371 ~V~r~~~ 377 (387)
T cd01360 371 IVQREYY 377 (387)
T ss_pred HHHHHHH
T ss_conf 9999978
No 13
>cd01597 pCLME pCLME: prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like This group contains proteins similar to pCLME, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=0 Score=610.65 Aligned_cols=424 Identities=22% Similarity=0.224 Sum_probs=365.6
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 64223202333203323843469999842550789999999999999999999987999989999999999999966645
Q gi|254780370|r 2 SKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVD 81 (473)
Q Consensus 2 ~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~ 81 (473)
+.+|.++|+..+|+ |...+...+.+..|++.++.+.|+||++.+++|.++++...-++..
T Consensus 3 ~~~y~~~e~~~i~s--------------------~~~~i~~~~~ve~A~A~a~~~lG~ip~~~a~~I~~a~~~~~~d~~~ 62 (437)
T cd01597 3 GDLFGTPAMREIFS--------------------DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAAADVERLDLEA 62 (437)
T ss_pred CCCCCCHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHH
T ss_conf 43338899998729--------------------1999999999999999999876999999999999872764679999
Q ss_pred CCEECCCCCCHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 98001566463799999999731110-23420144101123788799999999999986778899999744773014520
Q gi|254780370|r 82 GSFVFSRDLEDIHMNIEARLTSLIGS-IAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIM 160 (473)
Q Consensus 82 ~~~~~~~~~edvh~~iE~~l~~~~G~-~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 160 (473)
..-.......|+ +++.+.+.+.+|+ .|+|+|+|+||||+++|+++|++|+++..+.+.+..|+++|.++|++|++|+|
T Consensus 63 ~~~~~~~~~~~v-~a~v~~l~~~~~~~~g~~vH~G~TsnDv~~Ta~~l~l~~~~~~l~~~l~~l~~~L~~~A~~~~~~~~ 141 (437)
T cd01597 63 LAEATARTGHPA-IPLVKQLTAACGDAAGEYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPM 141 (437)
T ss_pred HHHHHHHCCCCH-HHHHHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 999998728828-9999999985681302755799785313866999999988999999999999999999998259820
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----HHHHHHHCCCCCCCCCHHH
Q ss_conf 016653011334445678888887862069899987454233565320335666789----9896310387643478567
Q gi|254780370|r 161 PGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID----RHFTAKELGFREPTRNSID 236 (473)
Q Consensus 161 pg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id----r~~~a~~LGf~~~~~ns~d 236 (473)
|||||+|||||+|||||+++|+++|.|+.+||.+++++++.+|||+++|+|++++.+ ++++++.|||..|..+
T Consensus 142 ~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~lgGAvGt~~~~~~~~~~~~~~~a~~Lgl~~~~~~--- 218 (437)
T cd01597 142 VGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQEALAAELGLGVPAIP--- 218 (437)
T ss_pred ECCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC---
T ss_conf 14446741343419999999999999999999999997764356766454545786379999999999489999986---
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3027886424677768876648999999999841245615404554-565300444336013899876689997523358
Q gi|254780370|r 237 SVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAF-STGSSIMPQKRNPDGAELVRAKTGRINGALLSL 315 (473)
Q Consensus 237 av~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~-~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~ 315 (473)
+.++||+++|++++++.++++|+|||+|+++|+++|||++.+|... ++||||||||+||+.+|.+++++.++.|++..+
T Consensus 219 ~~~~rd~~~e~~~~l~~la~~L~kia~Di~ll~~~~~gei~~p~~~~~~GSS~MP~K~NPv~~E~v~~~a~~v~g~~~~~ 298 (437)
T cd01597 219 WHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVGCELIVALARRVPGLAALL 298 (437)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 54353899999999999988899999999999874330421543589988788899879788999999999998779999
Q ss_pred HHHHHCCCCHHCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCC
Q ss_conf 767404840000100---1005579889999998656765230586665210121123--78443999999999853999
Q gi|254780370|r 316 LTIMKGLPLAYSKDM---QEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLP 390 (473)
Q Consensus 316 ~~~~~~~p~~~~rDl---q~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~Gip 390 (473)
+. +.+.+|+||. +..+..+++++..+..++..+..++++++||+++|++++. .++++++.++..|+. +++
T Consensus 299 ~~---~~~~~~Erd~~~~~~~~~~l~~~~~l~~~~l~~~~~~l~~l~vn~erm~~nl~~~~~~i~ae~~~~~L~~--~ig 373 (437)
T cd01597 299 LD---AMVQEHERDAGAWHAEWIALPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP--KLG 373 (437)
T ss_pred HH---HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHCCCHHHHHHHHHHHHH--CCC
T ss_conf 98---7675421054625778988999999999999999987511535599999999856268989999999863--389
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 79999999999999998298968989999994001132689996599999962148999998999999999
Q gi|254780370|r 391 FREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTY 461 (473)
Q Consensus 391 FReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~ 461 (473)
|++||++|+++++.|.++|+++.|+.+++........++++.++|||++++ |.+|+.|++.|++
T Consensus 374 ~~~Ahe~v~~~a~~A~~~g~~l~e~~~~d~~~~~~l~~~el~~lldP~~~i-------G~a~~~v~~~~~r 437 (437)
T cd01597 374 RQEAHDLVYEACMRAVEEGRPLREVLLEDPEVAAYLSDEELDALLDPANYL-------GSAPALVDRVLAR 437 (437)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHCCCCHHHHHHHCCHHHHC-------CCHHHHHHHHHCC
T ss_conf 899999999999999997988999986485643799999999872998773-------9689999999729
No 14
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase_like (ASL_like): This subgroup contains proteins similar to ASL and prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE). These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has bee
Probab=100.00 E-value=0 Score=603.38 Aligned_cols=358 Identities=23% Similarity=0.243 Sum_probs=316.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHC-CCCCCCC
Q ss_conf 999999999999999999998799998999999999999996664598001566463799999999731110-2342014
Q gi|254780370|r 36 DKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGS-IAGKMHT 114 (473)
Q Consensus 36 D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~-~~~~lH~ 114 (473)
|...+...+.++.|++.++.+.|+||++++++|.++++.+..++............|| .++|.+|.+++|+ .|+|+|+
T Consensus 7 d~~~i~~~l~ve~A~a~a~~~~G~ip~~~a~~I~~~~~~~~~d~~~~~~~~~~~~h~v-~a~~~~l~~~~~~~~~~~vH~ 85 (381)
T cd01595 7 EENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKETGHDV-IAFVYALAEKCGEDAGEYVHF 85 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCH-HHHHHHHHHHCCHHCCCCCCC
T ss_conf 0899999999999999999877999999999999987405478999999987628808-999999998677021475568
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41011237887999999999999867788999997447730145200166530113344456788888878620698999
Q gi|254780370|r 115 ARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFD 194 (473)
Q Consensus 115 grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~ 194 (473)
|||||||++|+++|++|+++..+.+.|..|+++|.++|++|++|+||||||+|||||+|||||+++|+++|.||++||.+
T Consensus 86 G~TsnDi~~Ta~~L~lr~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~ 165 (381)
T cd01595 86 GATSQDINDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEE 165 (381)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97588888799999999999999999999999999999981487110311367176664999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCC----CCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87454233565320335----66678998963103876434785673027886424677768876648999999999841
Q gi|254780370|r 195 SIERLDECPLGAAALAG----TSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST 270 (473)
Q Consensus 195 ~~~~~~~~pLG~~A~~G----T~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss 270 (473)
++++++++|+|++.++| +.++.+|+++|++|||..|..+ ..+++||+++|++++++.++.+|+|||+|+++|++
T Consensus 166 ~~~~~~~~~lgGavGt~~~~~~~~~~~~~~~a~~LGl~~~~~~--~~~~~rd~~~e~~~~l~~~~~~l~kia~Dl~~~~~ 243 (381)
T cd01595 166 ARERVLVGGISGAVGTHASLGPKGPEVEERVAEKLGLKVPPIT--TQIEPRDRIAELLSALALIAGTLEKIATDIRLLQR 243 (381)
T ss_pred HHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCH--HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998987257863201102499669999999998489987303--20113379999999999999999999999999863
Q ss_pred CCCCCEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 245615404-554565300444336013899876689997523358767404840000100100---5579889999998
Q gi|254780370|r 271 PQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQED---KEPVFDALETLQI 346 (473)
Q Consensus 271 ~e~~~i~l~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~---~~~l~~ai~~~~~ 346 (473)
+|||++.+| +.+++|||||||||||+.+|++++++..+.|++..++ .++|++|+||+++. |..+++++..+..
T Consensus 244 ~e~gev~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~---~~l~~~~eRD~~~~~~~~~~l~~~~~~~~~ 320 (381)
T cd01595 244 TEIGEVEEPFEKGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPAL---ENLVQWHERDLSDSSVERNILPDAFLLLDA 320 (381)
T ss_pred HCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 10450313678999887888887686889999999999999999999---854200148874028999899999999999
Q ss_pred HHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 656765230586665210121123--784439999999998539997999999999
Q gi|254780370|r 347 IILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLPFREAHYITGC 400 (473)
Q Consensus 347 ~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~GipFReAH~iVg~ 400 (473)
++..+..++++++||+++|++++. .|+++|+++++.|++ +|+|||+||++|.+
T Consensus 321 ~l~~~~~ll~~l~vn~~~m~~nl~~~~g~i~ae~~~~~L~~-~Gi~~~~Ah~iV~e 375 (381)
T cd01595 321 ALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAK-KGLGRQEAYELVKE 375 (381)
T ss_pred HHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHH
T ss_conf 99999998774999999999998724687799999999988-39987789999999
No 15
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=599.12 Aligned_cols=412 Identities=20% Similarity=0.221 Sum_probs=354.5
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 96422320233320332384346999984255078999999999999999999998799998999999999999996664
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIV 80 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~ 80 (473)
|+++|.++||..+|+ |..-+..-+.++.|.+..+++.|+||+++++.|.+++....-+..
T Consensus 1 mi~RY~~~em~~ifs--------------------~~~~~~~~l~vE~ALa~Aqa~lGiIp~~aa~~I~~~~~~~~~d~~ 60 (433)
T PRK07492 1 MIPRYSRPEMVAIWE--------------------PETKFRIWFEIEAHACEAQAELGVIPKEAAETIWEKGKDAEFDVA 60 (433)
T ss_pred CCCCCCCHHHHHHHC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHH
T ss_conf 987648799998809--------------------079999999999999999998699999999999986022578999
Q ss_pred CCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 59800156646379999999973111023420144101123788799999999999986778899999744773014520
Q gi|254780370|r 81 DGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIM 160 (473)
Q Consensus 81 ~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 160 (473)
.-.........|| .++.+.|.+.+|+.|+|+|+|.|+||+++|++.|++|+++..+...|..+.++|.++|++|++|||
T Consensus 61 ~i~~~e~~~~hdv-~a~v~~l~~~~g~~a~~vH~GaTSqDi~DTa~~L~lk~a~~~i~~~l~~l~~~L~~lA~~~~~t~m 139 (433)
T PRK07492 61 RIDEIEAVTKHDV-IAFLTHLAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPT 139 (433)
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 9999998849982-999999998647000413435317868864999999999999999999999999999998556756
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHCCCCCCCCCHHHH
Q ss_conf 016653011334445678888887862069899987454233565320335666789---98963103876434785673
Q gi|254780370|r 161 PGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID---RHFTAKELGFREPTRNSIDS 237 (473)
Q Consensus 161 pg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id---r~~~a~~LGf~~~~~ns~da 237 (473)
+||||+|||+|||||++++.|+++|.|+.+||.++.+++.++++|++ + ||..+++ ++.+|+.|||..+..++ .
T Consensus 140 ~GRTh~Q~A~P~TfG~k~a~w~~~l~r~~~RL~~~~~~~~~~~l~GA-v-Gt~a~~~~~v~~~~a~~LGL~~~~~~~--q 215 (433)
T PRK07492 140 IGRSHGIHAEPTTFGLKLARFYAEFSRNRERLVAAREEIATCAISGA-V-GTFANIDPRVEEHVAKKLGLKPEPVST--Q 215 (433)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-C-CCCCCCCHHHHHHHHHHHCCCCCCCCC--C
T ss_conf 68865783100179999999999999999999999987510111440-1-366568889999998861888898766--6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027886424677768876648999999999841245615404-5545653004443360138998766899975233587
Q gi|254780370|r 238 VSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLL 316 (473)
Q Consensus 238 v~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~ 316 (473)
+.+||+++|+.+++++++.+|+|||+|+++|+++|+|++.-| .+.++|||+|||||||+.+|.++|++..+.|...
T Consensus 216 ~~~RD~~~e~~~~La~i~~~l~kia~di~~l~~~ei~Ev~E~f~~gq~GSSaMPhKrNPv~~E~i~~lar~v~~~~~--- 292 (433)
T PRK07492 216 VIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVLEAEEYFSPGQKGSSAMPHKRNPVLTENLTGLARLVRSYVI--- 292 (433)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH---
T ss_conf 56425799999999999987999999999988666778872146899876668856384999999999999987677---
Q ss_pred HHHHCCCCHHCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCC--CCCCCHHHHHHHHHHHHCCCCH
Q ss_conf 674048400001001005---57988999999865676523058666521012112--3784439999999998539997
Q gi|254780370|r 317 TIMKGLPLAYSKDMQEDK---EPVFDALETLQIIILAISAMIEDLTVNKDRLQEAA--TKSHSTATDLADWLVSHAGLPF 391 (473)
Q Consensus 317 ~~~~~~p~~~~rDlq~~~---~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~--~~~~~~AT~lAd~Lv~~~GipF 391 (473)
.+++++|.+|+||++++. -.+++++..+..++..+..++++|+||+++|++++ .+|++.++.++.+|+ ++|+||
T Consensus 293 ~~~~~~~~~hERd~~~s~~er~~lpd~~~~~~~~l~~~~~ll~~L~V~~~rM~~Nl~~~~g~i~se~v~~~L~-~~g~gR 371 (433)
T PRK07492 293 PAMENVALWHERDISHSSVERMIGPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKLGGLVHSQRVLLALT-QAGVSR 371 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCCH
T ss_conf 8988627764201535377888877799999999999998664147879999999988068779999999998-869988
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99999999999999982989689899999940011326899965999999
Q gi|254780370|r 392 REAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 392 ReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
++||++|++++..+.++|+++.|+..++........++++..+|||.+++
T Consensus 372 ~~Ah~~V~~~a~~a~~~~~~l~e~l~~d~~v~~~l~~~el~~~~dp~~yl 421 (433)
T PRK07492 372 EDAYRLVQRNAMKVWEQGGDFLEELKADPEVRAALSEEEIEELFDLGYHT 421 (433)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHCCHHHHHHHHCHHHHH
T ss_conf 99999999999999987979999987196988409999999871979999
No 16
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=568.29 Aligned_cols=414 Identities=18% Similarity=0.222 Sum_probs=346.0
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-------HH
Q ss_conf 96422320233320332384346999984255078999999999999999999998799998999999999-------99
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEG-------LK 73 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~a-------l~ 73 (473)
|++||.++||.++|+ |...+...+.++.|.+.++++.|+||++++++|.+. +.
T Consensus 1 mi~Ry~~~em~~ifs--------------------~e~~~~~~l~vE~ala~Aqa~lG~IP~~aa~~I~~~~~~d~~~i~ 60 (442)
T PRK08470 1 MVERYAREEMAKKWT--------------------MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAKFDIARID 60 (442)
T ss_pred CCCCCCCHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 986428799998839--------------------389999999999999999987699999999999985799999999
Q ss_pred HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99966645980015664637999999997311102342014410112378879999999999998677889999974477
Q gi|254780370|r 74 VIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAE 153 (473)
Q Consensus 74 ~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~ 153 (473)
++.++.. .|| .++-..+.+.+|+.|+|+|+|.|+||++||++.|++|+++..+...|..++.+|.++|+
T Consensus 61 ~~e~~t~----------hdv-ia~v~~l~~~~g~~~~~vH~GaTSqDi~DTa~~L~lk~al~~i~~~l~~l~~~L~~lA~ 129 (442)
T PRK08470 61 EIEKTTK----------HDL-IAFLTSVSESLGEESRFVHYGMTSSDCIDTAVALQMKDSLKLIIEDVKNLMEAIKKRAL 129 (442)
T ss_pred HHHHHHC----------CCH-HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999859----------982-99999999856612270014857864999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHCCCCC-CC
Q ss_conf 3014520016653011334445678888887862069899987454233565320335666789-989631038764-34
Q gi|254780370|r 154 EHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID-RHFTAKELGFRE-PT 231 (473)
Q Consensus 154 ~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id-r~~~a~~LGf~~-~~ 231 (473)
+|++|+|+||||+|||+|||||++++.|+++|.|+.+||.++.+++.++++|++.++....+.+ .+.+|+.|||.. |.
T Consensus 130 ~~k~t~m~GRTh~q~A~PiTfG~k~a~w~~~l~r~~~rL~~~~~~~~~g~~~GAvGt~a~~~~~v~~~~a~~LGL~~~p~ 209 (442)
T PRK08470 130 EHKNTLMVGRSHGIHGEPITFGLVLAIWYDEIKRHLKLLEHTMEVISVGKISGAMGNFAHAPLELEELVCEELGLKPAPV 209 (442)
T ss_pred HHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 85667355510656540467789999998998889999999987642022011214457785799999999689998875
Q ss_pred CCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 785673027886424677768876648999999999841245615404-5545653004443360138998766899975
Q gi|254780370|r 232 RNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRING 310 (473)
Q Consensus 232 ~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g 310 (473)
. .++.+||+++|+++++++++.+|+|||.|+++|+++|+++++-| .+-++|||+|||||||+.+|.++|+|..+.|
T Consensus 210 ~---~q~~~Rd~~ae~~~~La~ia~sl~Kia~di~~l~~tev~Ev~E~f~~gq~GSSaMPhKrNPi~~E~i~~lar~~r~ 286 (442)
T PRK08470 210 S---NQVIQRDRYARLASALALLASSCEKIAVNIRHLQRTEVYEAEEYFSPGQKGSSAMPHKRNPVLSENITGLCRVIRS 286 (442)
T ss_pred C---CCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 2---3020210899999999999988999999999861256324523568989853778855074989999999987787
Q ss_pred HHHHHHHHHHCCCCHHCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCC--CCCCCHHHHHHHHHHH
Q ss_conf 233587674048400001001005---57988999999865676523058666521012112--3784439999999998
Q gi|254780370|r 311 ALLSLLTIMKGLPLAYSKDMQEDK---EPVFDALETLQIIILAISAMIEDLTVNKDRLQEAA--TKSHSTATDLADWLVS 385 (473)
Q Consensus 311 ~~~~~~~~~~~~p~~~~rDlq~~~---~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~--~~~~~~AT~lAd~Lv~ 385 (473)
+.. .++.|.+.+|+||++.+. -.+++++..+..++..+..++++++||++||++++ .+|++.++.++..|+
T Consensus 287 ~~~---~~~e~~~~~hERd~~~s~~Er~~lpd~~~l~~~~l~~~~~vl~~L~V~~~rM~~NL~~t~gli~se~vm~~L~- 362 (442)
T PRK08470 287 FVT---PALENVALWHERDISHSSVERFILPDAFITADFMLSRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELP- 362 (442)
T ss_pred HHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHHHH-
T ss_conf 678---9998617862768740176887899999999999999998760378868999999998668279999999998-
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCC------------HHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHH
Q ss_conf 53999799999999999999982989------------689899999940011326899965999999621489999989
Q gi|254780370|r 386 HAGLPFREAHYITGCTVSLAEKNQCE------------LAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAA 453 (473)
Q Consensus 386 ~~GipFReAH~iVg~lV~~A~~~g~~------------l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~ 453 (473)
++|+++++||++|.++++.+.++... +.++..+|.+....+.++++..+|||.+++ |-++.
T Consensus 363 ~~G~~R~~Ah~~V~~~a~~~~~~~~~~~~~~~~~~~~~f~~~l~~d~~v~~~ls~~el~~l~dp~~yl-------~~~~~ 435 (442)
T PRK08470 363 KKGVSREDAYKIVQRNAMKVWEDLQQGKAAINEKGESLFLQALLNDEELRKSLSEEEIRACFDYSYYT-------KNVDA 435 (442)
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHCCCCHHHHHHHHCHHHHH-------HHHHH
T ss_conf 87999999999999999999997541103442024305899987497988039999999871989998-------72889
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780370|r 454 EVLKQV 459 (473)
Q Consensus 454 ~V~~~i 459 (473)
-+++.+
T Consensus 436 i~~rvl 441 (442)
T PRK08470 436 IFKRVF 441 (442)
T ss_pred HHHHHC
T ss_conf 999861
No 17
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=564.73 Aligned_cols=409 Identities=20% Similarity=0.251 Sum_probs=352.0
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-------HH
Q ss_conf 96422320233320332384346999984255078999999999999999999998799998999999999-------99
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEG-------LK 73 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~a-------l~ 73 (473)
|++||.++||..+|+ |...+...++++.|.+..+++.|+||++.+..|.+. +.
T Consensus 1 mi~RY~~~em~~ifs--------------------d~~~~~~~l~vE~Ala~aqa~lG~IP~~aa~~I~~~~~~d~~~i~ 60 (431)
T PRK07380 1 MIERYTLPEMGNIWT--------------------DTAKFQTWLDVEIAACEAQAELGKIPEEAVEEIKAKANFDPQRIL 60 (431)
T ss_pred CCCCCCCHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHH
T ss_conf 987648799998739--------------------389999999999999999987699999999999986699999999
Q ss_pred HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99966645980015664637999999997311102342014410112378879999999999998677889999974477
Q gi|254780370|r 74 VIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAE 153 (473)
Q Consensus 74 ~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~ 153 (473)
++.++.. .|| .++-..+.+.+|+.|+|+|+|.|+||++||++.|++|+++..+...|..+..+|..+|+
T Consensus 61 ~~e~~~~----------h~v-~a~v~~l~~~~g~~~~~vH~GaTSqDI~DTa~~L~lr~al~~i~~~L~~l~~~L~~la~ 129 (431)
T PRK07380 61 EIEAEVR----------HDV-IAFLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLKASVDLLLEELEDLIQAIRYLAR 129 (431)
T ss_pred HHHHHHC----------CCC-HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998729----------897-99999999856301182554867743787799999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHCCCCCC
Q ss_conf 3014520016653011334445678888887862069899987454233565320335666789---9896310387643
Q gi|254780370|r 154 EHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID---RHFTAKELGFREP 230 (473)
Q Consensus 154 ~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id---r~~~a~~LGf~~~ 230 (473)
+|++|||+||||+|||+|||||++++.|+++|.|+.+||.++++++.++++|++. ||...++ ...+++.|||..+
T Consensus 130 ~~~~t~m~GRTh~q~A~PiTfG~k~a~w~~~l~r~~~RL~~~~~~~~~~~l~GAv--Gt~a~~~~~~e~~~~~~LgL~~~ 207 (431)
T PRK07380 130 EHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLVRLREDVAVGQISGAV--GTYANTDPRVEAITCQKLGLKPD 207 (431)
T ss_pred HCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 8279743578634625115899999999999999999999999853121013112--44220250899999997699999
Q ss_pred CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC---CCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4785673027886424677768876648999999999841245615404554---5653004443360138998766899
Q gi|254780370|r 231 TRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAF---STGSSIMPQKRNPDGAELVRAKTGR 307 (473)
Q Consensus 231 ~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~---~~GSSiMPqKrNP~~~E~ir~~a~~ 307 (473)
...+ .+.+||+++|+++++++++.+|+|||+|+++|+++|++++ .|+| ++|||+|||||||+.+|.+++.+..
T Consensus 208 ~~~~--q~~~Rd~~ae~~~~La~i~~~l~kia~di~~l~~~ei~Ev--~E~~~~gq~GSStMPhKrNPi~~E~i~~lar~ 283 (431)
T PRK07380 208 TAST--QVISRDRHAEYVQTLALVGASLERFATEIRNLQRTDVLEV--EEYFAKGQKGSSAMPHKRNPIRSERLSGLARV 283 (431)
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE--ECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9867--7207199999999999999999999999999871686336--31568998912887856285889999999998
Q ss_pred HHHHHHHHHHHHHCCCCHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHH
Q ss_conf 97523358767404840000100100---5579889999998656765230586665210121123--784439999999
Q gi|254780370|r 308 INGALLSLLTIMKGLPLAYSKDMQED---KEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADW 382 (473)
Q Consensus 308 ~~g~~~~~~~~~~~~p~~~~rDlq~~---~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~ 382 (473)
+.|....+ +.+.+.+|+||++.+ |..+++++..+..++..+..++++++||+++|++++. .|++.++.++..
T Consensus 284 ~r~~~~~~---l~~~~~~hERD~~~s~~Er~~lp~~~~~~~~~l~~~~~ll~~L~V~~~~M~~Nl~~~~gli~se~vm~~ 360 (431)
T PRK07380 284 LRSYVVAA---LENVALWHERDISHSSVERVMLPDCSILLHFMLREMTDLVKNLGVYPENMRRNMNIYGGVVFSQRVLLA 360 (431)
T ss_pred HHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 88757889---975088606782434547867889999999999999998606889799999999882787899999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHH-HCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 998539997999999999999999-829896898999999400113268999659999996214899999899999
Q gi|254780370|r 383 LVSHAGLPFREAHYITGCTVSLAE-KNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLK 457 (473)
Q Consensus 383 Lv~~~GipFReAH~iVg~lV~~A~-~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~ 457 (473)
|+. +|+++++||++|.+++..|. ++|+++.|+..++........++++.++|||++++ |-++.-+++
T Consensus 361 L~~-~g~gR~~Ah~~v~~~a~~a~~~e~~~l~e~l~~d~~v~~~ls~~ei~~~~dP~~yl-------g~~~~i~~R 428 (431)
T PRK07380 361 LVE-KGMSREEAYRLVQKNAHQAWNTEGGNFRANLEADPEVTALLSAEELADCFDPQLHL-------KNLDVIWQR 428 (431)
T ss_pred HHH-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHCCHHHHHHHHCHHHHH-------HCHHHHHHH
T ss_conf 988-69988999999999999999864998899987396988419999999873989888-------473478784
No 18
>pfam00206 Lyase_1 Lyase.
Probab=100.00 E-value=0 Score=580.46 Aligned_cols=295 Identities=35% Similarity=0.477 Sum_probs=283.1
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC-CCEECCCCCCHHH
Q ss_conf 323843469999842550789999999999999999999987999989999999999999966645-9800156646379
Q gi|254780370|r 16 GRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVD-GSFVFSRDLEDIH 94 (473)
Q Consensus 16 grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~-~~~~~~~~~edvh 94 (473)
|||+.++++.+..|+.|..+|++|+.+||.+++||+.|++++|+|+++++++|.++|++|..++.. +.|++++..||+|
T Consensus 1 Gr~~~~~~~l~~~ft~~~~~~~rl~~~dI~~~~a~~~~la~~~~i~~~~~~~I~~al~~i~~~~~~~~~f~i~~~~e~~~ 80 (312)
T pfam00206 1 GRFTVPADALMGIFTDRSRFNFRLSEEDIKGLAALKKAAAKANVLLKEEAAAIIKALDEVAEEGKADDAFVLKVIQEGSG 80 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 98588479999998389880881207589999999999998599998999999999999984222389703362147678
Q ss_pred HHHHHHHHHHHHC-------CCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999999731110-------2342014410112378879999999999-9986778899999744773014520016653
Q gi|254780370|r 95 MNIEARLTSLIGS-------IAGKMHTARSRNDQVALDLRLWIKEKTL-EITNDLKKLLTILLDKAEEHHNTIMPGFTHL 166 (473)
Q Consensus 95 ~~iE~~l~~~~G~-------~~~~lH~grSrND~~~t~~rl~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~ 166 (473)
+.||..|.+.+|+ .++|+|+|||||||++|++||++|+++. .+.+.|..|+++|.++|++|++|+||||||+
T Consensus 81 ~~i~~~l~e~i~~~~~~~~~~~~~vH~g~SsnD~~~Ta~~L~~~~~l~~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTHl 160 (312)
T pfam00206 81 TAVNMNLNEVIGELLGQLVHPNDKVHTGQSSNDQVPTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHL 160 (312)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 89999999997623477788534443887712218889999999999999999999999999999998567611365466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHHCCCCCCCCCHHHHCC
Q ss_conf 01133444567888888786206989998745423356532033566678998-------96310387643478567302
Q gi|254780370|r 167 QTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKELGFREPTRNSIDSVS 239 (473)
Q Consensus 167 Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~LGf~~~~~ns~dav~ 239 (473)
|||||+|||||+++|+++|.||++||.+++++++.+|||+|+++||++++||+ .+++++||..+..|++++++
T Consensus 161 Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lggaa~~gt~~~~d~~~~~~~~~~l~~~~g~~~~~~n~~~~~~ 240 (312)
T pfam00206 161 QDATPVTLGQELSGYAVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATS 240 (312)
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 21320119999999999999999999999999979876289986776678820799999999998489988878888872
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 788642467776887664899999999984124561540455456-53004443360138998766899975
Q gi|254780370|r 240 DRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFST-GSSIMPQKRNPDGAELVRAKTGRING 310 (473)
Q Consensus 240 sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~-GSSiMPqKrNP~~~E~ir~~a~~~~g 310 (473)
+||+++|++++++.++++|+|||+|+++|+|+|||++++++++++ |||||||||||+.+|++||+|++++|
T Consensus 241 ~rD~~~e~~~~l~~~~~~L~kia~Di~l~~s~e~g~~~~~~~~~~~GSSiMP~K~NP~~~E~~~g~~~~v~G 312 (312)
T pfam00206 241 DRDAVVEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLAEGEPGSSIMPGKVNPDQLELLRGKAGRVFG 312 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHCCHHCCCC
T ss_conf 445999999999999999999999999980888795772389999866788998596598998481441229
No 19
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=0 Score=556.33 Aligned_cols=407 Identities=20% Similarity=0.182 Sum_probs=345.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-------HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHH---
Q ss_conf 99999999999999999999879999899999999999-------99966645980015664637999999997311---
Q gi|254780370|r 36 DKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLK-------VIRAEIVDGSFVFSRDLEDIHMNIEARLTSLI--- 105 (473)
Q Consensus 36 D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~-------~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~--- 105 (473)
|...+...+.++.|.+.++++.|+||++.+..|.++++ .+..+...... |+ .++-..+.+.+
T Consensus 23 ~~~~~~~~l~vE~Ala~Aqa~lG~IP~~aa~~I~~~~~~~~~d~~~~~~~~~~~~h-------~v-i~~V~~l~~~~~~~ 94 (452)
T PRK09053 23 DRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALAGN-------LA-IPLVKQLTAQVAAR 94 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC-------CC-HHHHHHHHHHHHHC
T ss_conf 38999999999999999998769999999999998614446899999999988278-------74-89999999987302
Q ss_pred -HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -1023420144101123788799999999999986778899999744773014520016653011334445678888887
Q gi|254780370|r 106 -GSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEM 184 (473)
Q Consensus 106 -G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~ 184 (473)
|+.|+|+|+|.|+||+++|++.|++|+++..|.+.|..++.+|.++|++|++|+|+||||+|||+|||||+++++|+++
T Consensus 95 ~~~a~~~vH~GaTS~Di~DTa~~L~l~~al~~l~~~l~~l~~~L~~lA~~~~~t~m~GRTH~Q~A~P~TfG~k~a~w~~~ 174 (452)
T PRK09053 95 DAEAARYVHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCAALATLAARHRATPMIGRTWLQQALPVTLGLKFAGWLDA 174 (452)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 75201111578767459999999999999999999999999999999998627720020147867331399999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----HHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 862069899987454233565320335666789----9896310387643478567302788642467776887664899
Q gi|254780370|r 185 FGRDISRFFDSIERLDECPLGAAALAGTSFPID----RHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSR 260 (473)
Q Consensus 185 l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id----r~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~r 260 (473)
|.|+.+||.++++++.++++|+++|+..+++-+ .+.+++.|||..|.. ....+||+++|++++++.++++|+|
T Consensus 175 l~r~~~rL~~~~~~~~~~~lgGAvGt~a~~~~~~~~v~~~la~~Lgl~~~~~---~~~~~rd~~~e~~~~L~~ia~~l~k 251 (452)
T PRK09053 175 LLRHRQRLAALRPRALVLQFGGAAGTLASLGERALAVAQALAEELQLALPAL---PWHTQRDRIVEFASALGLLAGTLGK 251 (452)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999888871377446444677540999999999868998888---7521359999999999999988999
Q ss_pred HHHHHHHHHCCCCCCEECCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHH---HHHH
Q ss_conf 99999998412456154045-5456530044433601389987668999752335876740484000010010---0557
Q gi|254780370|r 261 LAEEIILWSTPQFNFVRLSD-AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQE---DKEP 336 (473)
Q Consensus 261 la~Dl~~~ss~e~~~i~l~~-~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~---~~~~ 336 (473)
||+|+++|+++|+|+++.|. ..++|||||||||||+.+|.+.+.+.++.|+...++ .+.+.+|+||+.. .|..
T Consensus 252 ia~Dirll~~~eigEl~E~~~~~q~GSS~MPhK~NPv~~E~i~~lar~v~~~~~~~~---~~~~~~hERd~~~~~~e~~~ 328 (452)
T PRK09053 252 IARDVSLLMQTEVGEVFEPAAAGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLF---AAMVQEHERALGGWHAEWDT 328 (452)
T ss_pred HHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHH
T ss_conf 999999986076574525678999875778876166989999999999997699999---87477512244227899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 9889999998656765230586665210121123--78443999999999853999799999999999999982989689
Q gi|254780370|r 337 VFDALETLQIIILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAK 414 (473)
Q Consensus 337 l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~e 414 (473)
+.+++..+..++..+..++++|+||+++|++++. .|++.++.++..|+.+ +++.+||++|.++++.|.++|+++.|
T Consensus 329 lp~~~~l~~~~l~~~~~~l~gL~v~~~~M~~nL~~~~gli~sE~v~~aL~~~--~Gr~~Ahe~V~~~a~~A~~~~~~l~e 406 (452)
T PRK09053 329 LPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALADR--IGRLDAHHLVEQASKRAVAQGRHLRD 406 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 9999999999999999998538777999999998715678899999998861--79999999999999999997988999
Q ss_pred CCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 899999940011326899965999999621489999989999999999999
Q gi|254780370|r 415 LPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNR 465 (473)
Q Consensus 415 l~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~ 465 (473)
+..++......+.++++.++|||++++ |-+++.|++.+++...+
T Consensus 407 ~l~~d~~v~~~Ls~~eld~lldP~~yl-------G~a~~~vdrvla~~~~~ 450 (452)
T PRK09053 407 VLAEDPQVSAHLSPAALDRLLDPAHYL-------GQARAWVDRVLAEHASR 450 (452)
T ss_pred HHHCCHHHHCCCCHHHHHHHHCHHHHH-------CCHHHHHHHHHHHHHHC
T ss_conf 987194866349999999882999770-------85499999999986622
No 20
>PRK08937 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=542.85 Aligned_cols=413 Identities=22% Similarity=0.242 Sum_probs=348.2
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHH
Q ss_conf 964223202333203323843469999842550789999999999999999999987999989999999999----9999
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGL----KVIR 76 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al----~~i~ 76 (473)
|+.+|.+++|..+|+ |...+...+.++.|.+..+++.| ||++.+..|.+.. ..+.
T Consensus 1 ~~~ry~~~em~~i~s--------------------~~~~~~~~l~vE~ala~aq~~~G-Ip~~~~~~i~~~~~~d~~~~~ 59 (425)
T PRK08937 1 MISRYSSQEMSAIWS--------------------DENKFTTWLELEIAIAEAQAELG-IPKEDLESIREKAKFDIDRIL 59 (425)
T ss_pred CCCCCCCHHHHHHHC--------------------HHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHCCCCHHHHH
T ss_conf 986428799998809--------------------28999999999999999998849-899999999986589999999
Q ss_pred HHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 66645980015664637999999997311102342014410112378879999999999998677889999974477301
Q gi|254780370|r 77 AEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHH 156 (473)
Q Consensus 77 ~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~ 156 (473)
+.-.. ..-|+ .++...|.+++|+.++|+|+|.|+||+++|++.|++|+++..+...|..+++.|.++|++|+
T Consensus 60 ~~e~~-------~~h~v-~a~v~~l~~~~~~~~~~vH~G~TSqDi~DTa~~l~l~~a~~~l~~~l~~l~~~L~~la~~~~ 131 (425)
T PRK08937 60 EIEKE-------TRHDV-VAFIRALAEKLGEDRKFIHYGLTSTDVVDTALAYLLKEALELIARELEAFIDGLAEDAKEYK 131 (425)
T ss_pred HHHHH-------HCCCC-HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999-------69796-99999999866633361352531663588999999999999999999999999999999853
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHCCCCCCCCCHH
Q ss_conf 4520016653011334445678888887862069899987454233565320335666-789989631038764347856
Q gi|254780370|r 157 NTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSF-PIDRHFTAKELGFREPTRNSI 235 (473)
Q Consensus 157 ~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~-~idr~~~a~~LGf~~~~~ns~ 235 (473)
+|+|+||||+|||+|+|||+++++|+++|.|+.+||.+++++++++++|++.+++.++ |..++++++.|||..| +..
T Consensus 132 ~t~m~grTh~Q~A~P~T~G~~~a~~~~~l~r~~~rl~~~~~~~~~~~~~GavGt~~~~~~~~~~~~a~~LGl~~~--~~~ 209 (425)
T PRK08937 132 LLVMLGRTHGVHAEPTTLGIKIALWYQEMKRNLERLKEALDRLEVRKISGAVGTYANLSDLLEKYVALKLGLDPD--EIS 209 (425)
T ss_pred CCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCC
T ss_conf 774235753780867659999999999999999999999988876345620120124688999999987699999--875
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 73027886424677768876648999999999841245615404554565300444336013899876689997523358
Q gi|254780370|r 236 DSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSL 315 (473)
Q Consensus 236 dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~ 315 (473)
..+++||+++|++++++.++.+++|||+|+++|+++|.....+ +..++|||||||||||+.+|.+++.+..+.|.+..+
T Consensus 210 ~~~~~Rd~~~e~~~~l~~~~~~l~kia~Di~~l~~~ee~~e~~-~~~~~GSS~MPhK~NPi~~E~~~~lar~~~~~~~~~ 288 (425)
T PRK08937 210 TQVLPRDRHLEYIVALAIIAASTEKFAREIRLLQRSEEVEEGF-NKGQKGSSAMPHKRNPIGSERVTGLARVLRSYLATA 288 (425)
T ss_pred CHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 1140363599999999999989999999999995789678746-999987677785618588999999999998768999
Q ss_pred HHHHHCCCCHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCC--CCCHHHHHHHHHHHHCCCC
Q ss_conf 7674048400001001---0055798899999986567652305866652101211237--8443999999999853999
Q gi|254780370|r 316 LTIMKGLPLAYSKDMQ---EDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATK--SHSTATDLADWLVSHAGLP 390 (473)
Q Consensus 316 ~~~~~~~p~~~~rDlq---~~~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~--~~~~AT~lAd~Lv~~~Gip 390 (473)
+..+ +.++. |+. ..|..+++++..+..++..+..++++++||+++|++++.. |++.++.++..|+ ++|++
T Consensus 289 ~~~~---~~~~e-d~~~~~~e~~~lp~~~~~~~~~l~~~~~~l~~L~v~~e~m~~nl~~~~g~i~ae~~~~~l~-~~glg 363 (425)
T PRK08937 289 AENV---PLWHE-DISHSSAERIILPDAFLALDYALRRFSNLLDNLEVYPENMERNIRQEFGFIATQRVLLALV-EKGLG 363 (425)
T ss_pred HHHH---HHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHH-HCCCC
T ss_conf 9987---60263-4444435674589999999999999999887741459999999998456787999999998-75999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 799999999999999982989689899999940011326899965999999621489999989999999
Q gi|254780370|r 391 FREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQV 459 (473)
Q Consensus 391 FReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i 459 (473)
+++||++|.++++.|..+|+++.|+..++- .+ ...++++.++|||++++ |-+++-+++..
T Consensus 364 r~~Ahe~v~~~a~~a~~~~~~l~e~l~~~~-~~-~ls~eeld~~ldP~~yl-------G~a~~i~drv~ 423 (425)
T PRK08937 364 REDAYELVQESAMESWQKQGDLRPLLHADK-SI-ILSKEELEEAFDPKKFI-------GAVDEIFKRVG 423 (425)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHCC-CC-CCCHHHHHHHCCHHHHH-------CCHHHHHHHHC
T ss_conf 799999999999999987988999996299-88-99999999871999886-------62899999865
No 21
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=539.36 Aligned_cols=421 Identities=18% Similarity=0.198 Sum_probs=350.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999999999999879999899999999999999666459800156646379999999973111023420144
Q gi|254780370|r 36 DKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTA 115 (473)
Q Consensus 36 D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~g 115 (473)
|...+.+-+.++.|.+..+++.|+||++.+..|.+++..-..+...-.-.......|| .+++..+.+++|+.+.|+|+|
T Consensus 21 e~~~~~~~l~vE~ala~aq~~~g~ip~~a~~~i~~~~~~~~~d~~~i~~~e~~t~hdv-~a~v~~l~e~~~~~~~~vH~G 99 (451)
T PRK06390 21 DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHDV-MALVEALSEQCSAGKNYVHFG 99 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCCEEECC
T ss_conf 7899999999999999999883999989999999975515678999999975608985-999999998613455746517
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10112378879999999999998677889999974477301452001665301133444567888888786206989998
Q gi|254780370|r 116 RSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDS 195 (473)
Q Consensus 116 rSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~ 195 (473)
.|++|+++|++.|++|+++..+.+.+..+++.|.++|.+|++|||+||||+|||+|||||+++++|+++|.|+.+||.++
T Consensus 100 ~TSqDI~Dta~~L~lk~a~~~i~~~l~~~~~~L~~lA~~h~~t~m~gRTHgQ~A~PtTfG~k~a~w~~~l~r~~~rL~~~ 179 (451)
T PRK06390 100 VTSNDINDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEM 179 (451)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 54642576899999999999999999999999999999851686423104762145179999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCCC----HHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 7454233565320335666789----989631038764347856730278864246777688766489999999998412
Q gi|254780370|r 196 IERLDECPLGAAALAGTSFPID----RHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTP 271 (473)
Q Consensus 196 ~~~~~~~pLG~~A~~GT~~~id----r~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~ 271 (473)
.+++..+.+|++.+++++++-+ +.++++.|||..+.. ..++.+||+++|++++++.++++|+|||+|+++|+++
T Consensus 180 ~~~~~~~~~~GavGt~a~~~~~~~~v~~~~~~~LgL~~~~~--~tq~~~rd~~~e~~~~l~~i~~~l~kia~di~~l~~~ 257 (451)
T PRK06390 180 GDRAFAGKVLGPVGTGAALGKDALDIQNRVMEILGIYSEIG--STQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRP 257 (451)
T ss_pred HHHHHHCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCC--CCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98898504466565201038637999999999818998874--1000133099999999999989999999999998667
Q ss_pred CCCCEEC--CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHH---HHHHHHHHHHHHH
Q ss_conf 4561540--4554565300444336013899876689997523358767404840000100100---5579889999998
Q gi|254780370|r 272 QFNFVRL--SDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQED---KEPVFDALETLQI 346 (473)
Q Consensus 272 e~~~i~l--~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~---~~~l~~ai~~~~~ 346 (473)
|+|++.- +...++|||+|||||||+.+|.+.+.+..+.+.+...+ .+.+.+++||+... +..+.+++..+..
T Consensus 258 ei~Ev~E~f~~~~~~GSStMPhK~NPi~~E~i~~la~~~~~~~~~~~---~~~~~~~ERDl~~s~~er~~lp~~~~l~~~ 334 (451)
T PRK06390 258 EIDEVSEYFDEESQVGSSSMPSKVNPINSENVVSLSRFIRSLIIPEY---EAGVTWHERDLTNSALERFTIPYASILIDY 334 (451)
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 88899886033589877778876385878999999999997478887---630020046872348999889999999999
Q ss_pred HHHHHHHHHCCCEECCCHHHHCCCC-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHH
Q ss_conf 6567652305866652101211237-844399999999985399979999999999999998298968989999994001
Q gi|254780370|r 347 IILAISAMIEDLTVNKDRLQEAATK-SHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISP 425 (473)
Q Consensus 347 ~L~l~~~li~~l~vn~erm~~~~~~-~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~ 425 (473)
++..+..++++++||+++|+++++. +.++++.+...|+ .+|+|+.+||++|.++++.|.++|+++.++..++ .....
T Consensus 335 ~l~~~~~~l~~L~vn~e~m~~nL~~~~~i~sE~i~~~L~-~~g~~r~~Ahe~v~~~~~~a~~~g~~l~e~l~~~-~i~~~ 412 (451)
T PRK06390 335 VLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALT-LSGMPRQDAHEFVRRASMEARSNGKSLKSSLIEA-GILKY 412 (451)
T ss_pred HHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHC-HHHHC
T ss_conf 999999887468888999999886498748999999999-8099887899999999999998598789997506-03214
Q ss_pred CCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1326899965999999621489999989999999999999998561
Q gi|254780370|r 426 VITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPK 471 (473)
Q Consensus 426 ~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~~~~~ 471 (473)
..++++..+|||++++ |-+|+.|++.|+++++.+++..+
T Consensus 413 l~~~eld~~ldP~~Yl-------G~a~~lvd~vl~~~~~~~~~~~~ 451 (451)
T PRK06390 413 IDEKTLDRAMDPANFI-------GQAPSICDNVVNNAERRMKDADE 451 (451)
T ss_pred CCHHHHHHCCCHHHHH-------HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9999998736988876-------43999999999999998633599
No 22
>cd01334 Lyase_I Lyase class I family of the Lyase_I superfamily. This family contains proteins similar to class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), and 3-carboxy-cis,cis-muconate lactonizing (CMLE) enzyme. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=0 Score=544.32 Aligned_cols=317 Identities=26% Similarity=0.316 Sum_probs=292.9
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHCC----CCCCCCCC
Q ss_conf 99999999999999987999989999999999999966645980015664637999999997311102----34201441
Q gi|254780370|r 41 EQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSI----AGKMHTAR 116 (473)
Q Consensus 41 ~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~~----~~~lH~gr 116 (473)
+|++.+++||+.++++.|+||++++++|.++++++........+......++.|+++|.+|.+++|+. ++|+|+|+
T Consensus 2 ~~~l~ve~A~a~a~~~~G~Ip~~~a~~I~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~vH~G~ 81 (330)
T cd01334 2 RYMVEVEVALAKALEELGLIPKSAAEEIRSAADEFSEKFKKDVKEQEGSTTHDVMAFNEVLKELIGEAGGDAARFVHYGA 81 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 13899999999999883989999999999999998724120242001577865029999999998774666315463798
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01123788799999999999986778899999744773014520016653011334445678888887862069899987
Q gi|254780370|r 117 SRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSI 196 (473)
Q Consensus 117 SrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~ 196 (473)
||||+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||+|||||+++|+++|.|+.+||.+++
T Consensus 82 TsnDi~dTa~~l~~r~al~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~ 161 (330)
T cd01334 82 TSNDVLDTAFPLAIRDALKILLPALQQLIETLAEKALKYKDVVMMGRTHLQDASPITLGQEILGWAYELKRDLDRLEEVK 161 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 82538999999999999999999999999999999998167701131115757772199999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCC----CCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 454233565320335666----7899896310387643478567302788642467776887664899999999984124
Q gi|254780370|r 197 ERLDECPLGAAALAGTSF----PIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQ 272 (473)
Q Consensus 197 ~~~~~~pLG~~A~~GT~~----~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e 272 (473)
++++++|||+++++|+++ +.+++++++.|||..|..|+++ +++||+++|++++++.++++|+|||+|+++|+++|
T Consensus 162 ~~~~~~~lgGavGt~~~~~~~~~~~~~~~a~~Lgl~~~~~~~~~-~~~rd~~~e~~~~l~~~a~~l~kia~Di~~l~~~e 240 (330)
T cd01334 162 ERVLFLGLGGAVGTGASTYPDPSEVRERVAKELGLAVRALNTTQ-ISERDAMVELHSALKLLAAILSKIARDIRLLSSGE 240 (330)
T ss_pred HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 98867376499987671389789999999998278776868898-82871799999999999999999999999985445
Q ss_pred CCCEECCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH---HHHHHHHHHHHHHHHHHH
Q ss_conf 5615404554-565300444336013899876689997523358767404840000100---100557988999999865
Q gi|254780370|r 273 FNFVRLSDAF-STGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDM---QEDKEPVFDALETLQIII 348 (473)
Q Consensus 273 ~~~i~l~~~~-~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDl---q~~~~~l~~ai~~~~~~L 348 (473)
||++.+|+.. ++|||||||||||+.+|++++.+.++.|++..++. +.+.+|.||+ +..|..+++++..+..++
T Consensus 241 ~~e~~~p~~~~~~GSS~MP~K~NPv~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~e~~~~~~~~~~l~~~l 317 (330)
T cd01334 241 IGEVKEPEAKGQGGSSAMPHKVNPIASERVTALARRVIANDESILM---NLALGHLRDLVDSPVERNAIPDVVHTLTAVL 317 (330)
T ss_pred CCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 5848766678997768889885978999999999999827999998---7212556214687989999999999999999
Q ss_pred HHHHHHHCCCEEC
Q ss_conf 6765230586665
Q gi|254780370|r 349 LAISAMIEDLTVN 361 (473)
Q Consensus 349 ~l~~~li~~l~vn 361 (473)
..+..++++|+||
T Consensus 318 ~~~~~~~~gl~vN 330 (330)
T cd01334 318 ETALGVCKGLEVN 330 (330)
T ss_pred HHHHHHHCCCEEC
T ss_conf 9999987548849
No 23
>TIGR00928 purB adenylosuccinate lyase; InterPro: IPR004769 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Adenylosuccinate lyase is involved in purine ribonucleotide biosynthesis.; GO: 0004018 adenylosuccinate lyase activity, 0009152 purine ribonucleotide biosynthetic process.
Probab=100.00 E-value=0 Score=541.71 Aligned_cols=410 Identities=26% Similarity=0.343 Sum_probs=353.1
Q ss_pred CCCCCC--CCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-------CCCHHHHHHHHHH
Q ss_conf 964223--2023332033238434699998425507899999999999999999999879-------9998999999999
Q gi|254780370|r 1 MSKKIK--SNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQG-------IISSEEAQKIIEG 71 (473)
Q Consensus 1 m~~~~~--~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~g-------ii~~~~~~~i~~a 71 (473)
|.+||+ ++||.++|+ +...++..+.+.+|.++++++.| .||+++++.|..-
T Consensus 1 ~~~RY~~~~~EM~~iWs--------------------e~~k~~~~l~VE~a~~~A~a~lGP~I~~v~~i~~~~~~~~~~k 60 (469)
T TIGR00928 1 LDERYGDKTPEMRAIWS--------------------EENKFKKWLDVEVALLRALAELGPVITEVPVIPAEAAKEIKEK 60 (469)
T ss_pred CCCCCCCCCHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHCC
T ss_conf 98765666635452206--------------------5789999999999999997410873010466438899998579
Q ss_pred ------------HHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ------------99999666459800156646379999999973111------023420144101123788799999999
Q gi|254780370|r 72 ------------LKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIG------SIAGKMHTARSRNDQVALDLRLWIKEK 133 (473)
Q Consensus 72 ------------l~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G------~~~~~lH~grSrND~~~t~~rl~lr~~ 133 (473)
.++|+++. ..|| ++++..|.|.|| +.++|||+|.|+||+++|+..|++|++
T Consensus 61 ~~a~~~~~~~~rikeIE~~t----------~HDv-~A~~~~l~E~~~~~~eL~~~~~~iH~G~TS~Di~Dta~aLllr~s 129 (469)
T TIGR00928 61 IVASFDDVDLERIKEIEAVT----------KHDV-KAVVKALAEKCGEAVELGAEGEYIHFGATSNDIVDTALALLLRDS 129 (469)
T ss_pred CEEEECHHHHHHHHHHHHHH----------CCHH-HHHHHHHHHHHHHHCCHHHCCEEEEECCCHHHHHHHHHHHHHHHH
T ss_conf 52631456688687763232----------4529-989989977400000322235015314644448887899999998
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -9999867788999997447730145200166530113344456788888878620698999874542335653203356
Q gi|254780370|r 134 -TLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGT 212 (473)
Q Consensus 134 -l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT 212 (473)
+..|.+.+.+|++.|.++|.+|+||||.||||+|||+|||||.+|+.|++++.|+++||..+.+++.+.-. +||+ ||
T Consensus 130 ~~~ii~~~l~~l~~~L~~~A~e~kd~~m~GRTHGq~A~PtT~G~~~A~w~~E~~R~~~rL~~~~~~~~vg~i-~Ga~-GT 207 (469)
T TIGR00928 130 RLEIILPKLKKLIDILKDKAEEHKDTVMLGRTHGQHAEPTTLGKKFALWADEMKRQLERLKQAKERIKVGGI-SGAV-GT 207 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCC-CH
T ss_conf 999879999999999999765309678841357824344869999999999999999999988861665742-2542-14
Q ss_pred CCCC------CH-------HHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
Q ss_conf 6678------99-------8963103876434785673027886424677768876648999999999841245615404
Q gi|254780370|r 213 SFPI------DR-------HFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLS 279 (473)
Q Consensus 213 ~~~i------dr-------~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~ 279 (473)
...+ || +++++.|||. +...|-.+|-+||+.+|++..|+.++++|.|||.|++.|.++|+..++
T Consensus 208 ~a~~~~~~~G~~~~~~~~E~~V~~~LGL~-~~~~stGQi~~RD~~a~~~~~LA~lA~~l~k~A~~iR~lq~~e~~ev~-- 284 (469)
T TIGR00928 208 YAAAGPLGDGDRDWLEEVEERVTELLGLK-PVPISTGQIIQRDRHAELLDALALLAATLEKFAVEIRLLQRTEVLEVE-- 284 (469)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHEE--
T ss_conf 76234457885799999999999870872-256747620000456899999988604866864788997603620111--
Q ss_pred CCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHCCCHHHHHH---HHHHHHHHHHHHHHHH
Q ss_conf 5545----653004443360138998766899975233587674048-4000010010055---7988999999865676
Q gi|254780370|r 280 DAFS----TGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGL-PLAYSKDMQEDKE---PVFDALETLQIIILAI 351 (473)
Q Consensus 280 ~~~~----~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~-p~~~~rDlq~~~~---~l~~ai~~~~~~L~l~ 351 (473)
+.|. .|||+|||||||+.+|.++|.+..+.|++..++ .+. |+|++||+.++.- .+++++-.+..+|..+
T Consensus 285 E~F~P~gQ~GSSaMPHKrNPI~~E~~~GlaRv~r~~~~~~~---~~~p~lW~ERDlt~SsveR~~Lp~~~~~~d~~L~~~ 361 (469)
T TIGR00928 285 EKFGPKGQVGSSAMPHKRNPIDSERVCGLARVIRSYVIPAL---ENVPVLWHERDLTDSSVERVILPDSFILADIILKTL 361 (469)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---HHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02468888777788899988416556579999999999999---708985002531111367888658999999999998
Q ss_pred HHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH------CCCCHHHCCHHHHHHH
Q ss_conf 5230586665210121123--7844399999999985399979999999999999998------2989689899999940
Q gi|254780370|r 352 SAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEK------NQCELAKLPLAMLQQI 423 (473)
Q Consensus 352 ~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~------~g~~l~el~~~~~~~~ 423 (473)
..+|++|.||+++|+++++ .|++.++.+.-.|| ++|+.+-+||++|..+.+.|.+ .+..|.|+..++ +.+
T Consensus 362 ~~~~~~L~vypeni~rnL~~~~gl~~~~~vl~~lv-~~G~gRe~aye~v~~~A~~a~~v~~e~~~~~~l~~~~~~~-~~~ 439 (469)
T TIGR00928 362 LKVVKKLVVYPENIKRNLELTLGLIASERVLIALV-ERGMGREEAYEIVRELAMKAAEVLKEEVEERDLLEFLLED-EEI 439 (469)
T ss_pred HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC-CCC
T ss_conf 75675034068899987300266002258999996-3158850168999999999999997316723689999727-456
Q ss_pred HHCC-CHHHHHHCCHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 0113-2689996599999962148999998999999
Q gi|254780370|r 424 SPVI-TSAVYDILKVESSISSRKSFGGTCAAEVLKQ 458 (473)
Q Consensus 424 ~~~~-~~di~~~ldp~~~v~~R~s~GGtap~~V~~~ 458 (473)
-+.+ ++++++++||.+|| |.++..|++.
T Consensus 440 ~~~~~~~e~~~~~~P~~y~-------G~a~~~ve~v 468 (469)
T TIGR00928 440 TKYLTEEELAELLDPETYI-------GNAREIVERV 468 (469)
T ss_pred CCCCCHHHHHHHCCHHHHH-------CCHHHHHHHC
T ss_conf 6125868999850936651-------4445554303
No 24
>cd01362 Fumarase_classII Class II fumarases. This group contains proteins similar to Escherichia coli fumarase C and the human mitochondrial fumarase. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=526.67 Aligned_cols=409 Identities=20% Similarity=0.256 Sum_probs=344.9
Q ss_pred HHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 3320332384346999984255-078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 11 NQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 11 ~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
+.+|| ..+...++.|.-| ..+...++.....+.+|.|.++.+.|+++++.++.|.+|+++|......++|++++-
T Consensus 15 ~~~yG----~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~G~L~~~~~~aI~~A~~ei~~g~~~~~F~vd~~ 90 (455)
T cd01362 15 DALWG----AQTQRSLENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQAADEVIAGKLDDHFPLVVW 90 (455)
T ss_pred CCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf 56326----99999996749889889999999999999999999998599999999999999999984997135145200
Q ss_pred CC----HHHHHHHHHHHHHH----H-CCC--CCCC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 46----37999999997311----1-023--4201------441011237887999999999-99986778899999744
Q gi|254780370|r 90 LE----DIHMNIEARLTSLI----G-SIA--GKMH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTILLDK 151 (473)
Q Consensus 90 ~e----dvh~~iE~~l~~~~----G-~~~--~~lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L~~~ 151 (473)
.. ..+||+...+..+. | ..| .++| +|+|+||+++|++++.....+ ..+.+.|..|+++|.++
T Consensus 91 Q~GaGTstNMN~NEViAn~A~e~~g~~~g~~~~vhPndhVN~~QStND~~PTA~~ia~~~~l~~~L~~~l~~L~~~L~~K 170 (455)
T cd01362 91 QTGSGTQTNMNVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDAK 170 (455)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 06887633240999999999998476678888769300100234667642279999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHH
Q ss_conf 77301452001665301133444567888888786206989998745423356532033566678998-------96310
Q gi|254780370|r 152 AEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKE 224 (473)
Q Consensus 152 A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~ 224 (473)
|++|.+++||||||+|+|+|+||||++++|+++|.||.+||.+++++++++|||++|+ ||+++.++. .+++.
T Consensus 171 a~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~RL~~a~~~l~~~~lGGtAv-GTG~n~~~~f~~~~~~~L~~~ 249 (455)
T cd01362 171 ADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRLYELALGGTAV-GTGLNAHPGFAEKVAAELAEL 249 (455)
T ss_pred HHHHCCCEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 9984477400541363476600899999999989999999999999999860577443-478788812679999999886
Q ss_pred CCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3876-434785673027886424677768876648999999999841---245615404554565300444336013899
Q gi|254780370|r 225 LGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 (473)
Q Consensus 225 LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ 300 (473)
+|+. .+..|+++++++||+++|+.++++.++++|+|||+|+++|+| .+||+|.+| +.++||||||||+||+++|.
T Consensus 250 tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP-~~q~GSSIMPgKvNPv~~E~ 328 (455)
T cd01362 250 TGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLGELSLP-ENEPGSSIMPGKVNPTQCEA 328 (455)
T ss_pred HCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCCCCCCCCCCCCCCHHHHH
T ss_conf 29997116878999848709999999999999999999999999827765684355479-99997787899879889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHH
Q ss_conf 87668999752335876740484000010010055798899999986567652-30586665210121123784439999
Q gi|254780370|r 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDL 379 (473)
Q Consensus 301 ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~l 379 (473)
+++.|.+++|+..++.....+-.+.-|--.......++++++.+..++..+.. +|.+|++|+++|++.++++.+++|.|
T Consensus 329 v~~v~~~ViGnd~ti~~a~~~G~~ELNv~~Plia~~ll~si~lL~~~~~~f~~~~i~gi~vn~e~~~~~l~~S~~l~TaL 408 (455)
T cd01362 329 LTMVAAQVMGNDAAITIAGSSGNFELNVFKPVIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTAL 408 (455)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHHHHH
T ss_conf 99999999665999998663530566422838999888899999999999999987658888999999998574389883
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHH
Q ss_conf 999998539997999999999999999829896898999999400113268999659999
Q gi|254780370|r 380 ADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVES 439 (473)
Q Consensus 380 Ad~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~ 439 (473)
+.++ .|+.+.+++++|.++|+++.|+.++. .-..++++.++|||++
T Consensus 409 ~p~i----------GY~~aa~iak~A~~~g~slrev~le~----~~ls~eeld~lldP~~ 454 (455)
T cd01362 409 NPHI----------GYDKAAKIAKKAHKEGLTLKEAALEL----GYLTEEEFDRLVDPEK 454 (455)
T ss_pred HHHH----------HHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCHHHHHHHCCCCC
T ss_conf 2376----------39999999999999399899999885----9999999998659212
No 25
>cd01357 Aspartatase Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=0 Score=520.08 Aligned_cols=407 Identities=23% Similarity=0.287 Sum_probs=355.1
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 33320332384346999984255-07899999999999999999999879999899999999999999666459800156
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR 88 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~ 88 (473)
.+.+|| ..+...+..|.-| ..++..++.....+.+|-|....+.|.++++.++.|.+|+++|......++|++++
T Consensus 14 ~~~~yG----aqT~Ra~~nF~i~~~~~~~~~i~a~~~vK~aaA~aN~~~g~l~~~~~~aI~~a~~ei~~g~~~d~Fp~~v 89 (450)
T cd01357 14 ADAYYG----IQTLRALENFPISGLKIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKACDEIIAGKLHDQFVVDV 89 (450)
T ss_pred CCCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 655303----8899999775988888999999999999999999999809999999999999999998599754688633
Q ss_pred CCC----HHHHHHHHHHHHH----HH-CCCC--CCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 646----3799999999731----11-0234--201------44101123788799999999999986778899999744
Q gi|254780370|r 89 DLE----DIHMNIEARLTSL----IG-SIAG--KMH------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDK 151 (473)
Q Consensus 89 ~~e----dvh~~iE~~l~~~----~G-~~~~--~lH------~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~ 151 (473)
-.. -..||+...+..+ +| ..|. .+| ++.|+||.++|++++.....+..+.+.|..|+++|.++
T Consensus 90 ~QtGsGTstNMN~NEVIan~A~~~~g~~~g~~~~vhPnDhVN~~QSsND~~PTA~~ia~~~~~~~L~pal~~l~~~L~~K 169 (450)
T cd01357 90 IQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQAK 169 (450)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10798653544089999999999957777888876953223565677647878999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-------HHHHHH
Q ss_conf 7730145200166530113344456788888878620698999874542335653203356667899-------896310
Q gi|254780370|r 152 AEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDR-------HFTAKE 224 (473)
Q Consensus 152 A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr-------~~~a~~ 224 (473)
|++|.+++|+||||+|+|+|+||||++++|++++.|+.+||.++++|++++|||++|+ ||+++.++ +.++++
T Consensus 170 a~e~~~vik~GRTHLQdA~PiTlGq~f~~~~~~l~r~~~Rl~~~~~rl~~l~lGGtAv-GTG~na~~~~~~~~~~~L~~~ 248 (450)
T cd01357 170 AREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLREVNLGGTAI-GTGINAPPGYIELVVEKLSEI 248 (450)
T ss_pred HHHHCCCEEECHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 9984246310543346775400799999999999999999999999988735776100-278789931689999999997
Q ss_pred CCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3876-434785673027886424677768876648999999999841---245615404554565300444336013899
Q gi|254780370|r 225 LGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 (473)
Q Consensus 225 LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ 300 (473)
+|+. .+..|.++++++||.++|++++++.++++|+|||+||++|+| .|||+|.+| +.++||||||||+||+.+|.
T Consensus 249 tgl~~~~a~n~~~a~~~~D~~~e~~~~L~~la~~L~KIa~Dirll~SGPr~g~~Ei~lP-~~q~GSSiMPgKvNPv~~E~ 327 (450)
T cd01357 249 TGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEINLP-AVQPGSSIMPGKVNPVIPEV 327 (450)
T ss_pred HCCCCEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCCCCCCCCCCCCCCHHHHH
T ss_conf 49997568888999957729999999999999999999999999736865672034569-99997888899879789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHH
Q ss_conf 87668999752335876740484000010010055798899999986567652-30586665210121123784439999
Q gi|254780370|r 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDL 379 (473)
Q Consensus 301 ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~l 379 (473)
+++.|.+++|+..++.....+.++.+|..+......+++++..+..++..+.. +++++++|++||+++++++++++|.|
T Consensus 328 v~~v~~qV~Gnd~~v~~a~~~G~leLNv~~P~i~~~ll~Si~lL~~a~~~f~~~cl~Gi~~N~er~~~~l~~s~~L~TaL 407 (450)
T cd01357 328 VNQVAFQVIGNDLTITMAAEAGQLELNVFEPVIAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTAL 407 (450)
T ss_pred HHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHH
T ss_conf 99989998561999998741343677601748899999999999999999999987648988999999998390169983
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCC
Q ss_conf 999998539997999999999999999829896898999999400113268999659
Q gi|254780370|r 380 ADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILK 436 (473)
Q Consensus 380 Ad~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ld 436 (473)
+.++ +|+.+++++++|.++|+++.|+.+++ ..+.++++.++|+
T Consensus 408 ~p~i----------GY~~aa~Iak~A~~~g~tlre~~~e~----~~ls~ee~d~iln 450 (450)
T cd01357 408 NPYI----------GYEAAAEIAKEALETGRSVRELVLEE----GLLTEEELDEILS 450 (450)
T ss_pred CHHH----------HHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCHHHHHHHHC
T ss_conf 2076----------39999999999999399799999884----9999999999849
No 26
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=0 Score=516.90 Aligned_cols=411 Identities=19% Similarity=0.248 Sum_probs=343.8
Q ss_pred HHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 3320332384346999984255-078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 11 NQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 11 ~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
+.+|| ..+...++.|.-| ..+...++.....+.+|.|.++.+.|.++++.++.|.+|+++|......++|++++-
T Consensus 19 ~a~yG----~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~g~L~~~~a~aI~~A~~ei~~g~~~~~F~vdv~ 94 (462)
T PRK00485 19 DALWG----AQTQRSLENFPIGGERMPRELIRALALIKKAAAQVNAELGLLDAEKADAIVAAADEVLAGKHDDHFPLDVW 94 (462)
T ss_pred CCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 56315----98999996729888889999999999999999999998499999999999999999984995014412111
Q ss_pred CC----HHHHHHHHHHHHHH----H-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 46----37999999997311----1-02342--01------441011237887999999999-99986778899999744
Q gi|254780370|r 90 LE----DIHMNIEARLTSLI----G-SIAGK--MH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTILLDK 151 (473)
Q Consensus 90 ~e----dvh~~iE~~l~~~~----G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L~~~ 151 (473)
.. -.+||+...+..+. | +.|.| +| +++|+||+++|++++.....+ ..+.+.|..|+++|.++
T Consensus 95 Q~GsGTstNMN~NEVIAn~A~e~lg~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia~~~~~~~~L~~al~~L~~~l~~K 174 (462)
T PRK00485 95 QTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALAIVEHLLPALEHLRDTLAAK 174 (462)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17887523351999999999998487778888769300100123667653169999999999998999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHH
Q ss_conf 77301452001665301133444567888888786206989998745423356532033566678998-------96310
Q gi|254780370|r 152 AEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKE 224 (473)
Q Consensus 152 A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~ 224 (473)
|++|.+++|+||||+|+|+|+||||+|++|++++.||.+||.+++++++++|||++|+ ||+++.+++ .+++.
T Consensus 175 a~e~~~~vk~GRTHLQdA~PiTlGq~f~a~a~~l~r~~~Rl~~~~~~l~~l~lGGtAv-GTGlna~~~f~~~v~~~L~~~ 253 (462)
T PRK00485 175 AEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAV-GTGLNAHPGFAEKVAAELAEL 253 (462)
T ss_pred HHHHCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 9985456200521154375511799999999999999999999999999874377532-378888810589999999998
Q ss_pred CCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3876-434785673027886424677768876648999999999841---245615404554565300444336013899
Q gi|254780370|r 225 LGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 (473)
Q Consensus 225 LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ 300 (473)
+||. .+..|+++++++||+++|+.+.++.++++|+|||+|+++|+| .+||+|.+| +.++||||||||+||+.+|.
T Consensus 254 tgl~~~~a~n~~~a~~~~D~~~e~~~~L~~lA~~L~KianDlRll~SGPr~glgEi~lP-a~q~GSSIMPgKvNPvi~E~ 332 (462)
T PRK00485 254 TGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGEISLP-ENEPGSSIMPGKVNPTQCEA 332 (462)
T ss_pred HCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCCCCCCCCCCCCCCHHHHH
T ss_conf 59997126878999858829999999999999999999999999726876684145479-99998787899889778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHH
Q ss_conf 87668999752335876740484000010010055798899999986567652-30586665210121123784439999
Q gi|254780370|r 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDL 379 (473)
Q Consensus 301 ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~l 379 (473)
+++.|.+++|+..++.....+-.+..|--.......++++++.+..++..+.. +|.+|++|+++|+++++++.+++|.|
T Consensus 333 v~~v~~qV~Gnd~tv~~A~~~G~lELNv~~Pli~~~ll~si~lL~~a~~~f~~~cI~Gi~vn~e~~~~~l~~S~~l~TaL 412 (462)
T PRK00485 333 LTMVCAQVMGNDAAVTFAGSQGNFELNVFKPVIAYNFLQSIRLLADAMRSFADHCVVGIEPNEERIKELLERSLMLVTAL 412 (462)
T ss_pred HHHHHHHHCCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHHHHC
T ss_conf 99845764075799999875133776134628886157699999999999999987638878999999997574479870
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r 380 ADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 380 Ad~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
+.++ .|+.+.++++.|.++|+++.|+.++ .....++++.++|||++.+
T Consensus 413 ~p~i----------GY~~aa~iak~A~~~g~~lrev~le----~~~ls~eeld~lldP~~mt 460 (462)
T PRK00485 413 NPHI----------GYDKAAKIAKKAHKEGLTLKEAALE----LGYLSEEEFDRWVDPEKMT 460 (462)
T ss_pred CCHH----------HHHHHHHHHHHHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHCC
T ss_conf 4276----------4999999999999959989999988----5999999999866998618
No 27
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=509.16 Aligned_cols=416 Identities=24% Similarity=0.278 Sum_probs=356.7
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH-------H
Q ss_conf 964223202333203323843469999842550789999999999999999999987999989999999999-------9
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGL-------K 73 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al-------~ 73 (473)
|..+|.++||.++|+ |...+..-+++..|.+.++++.|+||++.++.|.++. .
T Consensus 1 ~~~RY~~~em~~ifS--------------------~~~~~~~~l~vE~ala~A~aelG~Ip~~a~~~I~~~~~~~~~d~~ 60 (438)
T COG0015 1 LDGRYSSPEMRAIFS--------------------EEAKLRAWLKVEAALARAQAELGVIPAEAAAEIDAAAAFAEFDLE 60 (438)
T ss_pred CCCCCCCHHHHHHCC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 985527689998748--------------------778999999999999999887099989999999987320315799
Q ss_pred HHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999666459800156646379999999973111-0234201441011237887999999999999867788999997447
Q gi|254780370|r 74 VIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIG-SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKA 152 (473)
Q Consensus 74 ~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G-~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A 152 (473)
.|...-.... .|| ++++..|.+.|| +.++|+|+|.|+||+++|+..|++|+++..+.+.+..+++.|..+|
T Consensus 61 ~i~eie~~t~-------HdV-~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A 132 (438)
T COG0015 61 RIKEIEAETG-------HDV-KALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAELA 132 (438)
T ss_pred HHHHHHHHHC-------CCC-HHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999858-------885-99999999865621236245066668888589999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-C---HHHHHHHCCCC
Q ss_conf 7301452001665301133444567888888786206989998745423356532033566678-9---98963103876
Q gi|254780370|r 153 EEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPI-D---RHFTAKELGFR 228 (473)
Q Consensus 153 ~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~i-d---r~~~a~~LGf~ 228 (473)
.+|++|||+||||+|||+|||||.+++.|++++.|+++||.++.+++.+..+|++.++..+||- + ++++++.|||.
T Consensus 133 ~~~k~t~m~GRTHgq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~~g~i~Ga~Gt~Aa~~~~~~~ve~~v~e~LGL~ 212 (438)
T COG0015 133 LEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERIIVGKIGGAVGTLAALGDLGAEVEERVAEKLGLK 212 (438)
T ss_pred HHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 98278811123467777540199999999999999999999998533530126632218635840589999999986999
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCC---CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 434785673027886424677768876648999999999841245615404554---56530044433601389987668
Q gi|254780370|r 229 EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAF---STGSSIMPQKRNPDGAELVRAKT 305 (473)
Q Consensus 229 ~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~---~~GSSiMPqKrNP~~~E~ir~~a 305 (473)
.+...+ ++..||+++|+.++++.+++++.||+.|+++++++|++.+ .+.| ++|||+|||||||+.+|.+.|.+
T Consensus 213 ~~p~st--q~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev--~E~f~~gq~GSSaMPHKrNPi~~E~~~gla 288 (438)
T COG0015 213 PAPIST--QVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEV--EEPFAKGQVGSSAMPHKRNPIDSENVTGLA 288 (438)
T ss_pred CCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 998876--5065368999999999999879999999999871374300--134678998778787466828889999999
Q ss_pred HHHHHHHHHHHHHHHCCCCHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHH
Q ss_conf 9997523358767404840000100100---5579889999998656765230586665210121123--7844399999
Q gi|254780370|r 306 GRINGALLSLLTIMKGLPLAYSKDMQED---KEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLA 380 (473)
Q Consensus 306 ~~~~g~~~~~~~~~~~~p~~~~rDlq~~---~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lA 380 (473)
..+.+....++. +++++++||+..+ +-.+++++-.+..++..+..++++++||+++|+++++ .|++.++.++
T Consensus 289 r~~r~~~~~~~e---~~~~whERdlt~ssver~~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~ 365 (438)
T COG0015 289 RVARALVSTLLE---NLVLWHERDLTDSSVERVILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVM 365 (438)
T ss_pred HHHHHHHHHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999998999999---86888723562047888788899999999999999999757667999998874324526439999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 9999853999799999999999999982989689899999940011326899965999999621489999989999999
Q gi|254780370|r 381 DWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQV 459 (473)
Q Consensus 381 d~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i 459 (473)
..|+. +|+++-+||++|.+..+.+.++++++.++.+++.+......++++..++||.+++ |.+.+-+++.+
T Consensus 366 ~~l~~-~g~~Re~a~elvr~~a~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~dp~~y~-------G~a~~i~~r~~ 436 (438)
T COG0015 366 LALRK-KGMGREEAHELVREKAMKAWEQGKEFLELLLADERVTKYLSEEELLELLDPANYL-------GRADEIVERVV 436 (438)
T ss_pred HHHHH-CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHCCCHHHHCCCCHHHHHHCCCHHHHH-------HHHHHHHHHHH
T ss_conf 99886-4898999999999999999985032688861342533237688998717998875-------56999999874
No 28
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase_2: Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=0 Score=508.93 Aligned_cols=410 Identities=17% Similarity=0.145 Sum_probs=328.8
Q ss_pred CCCCCCCCHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHH
Q ss_conf 96422320233320332384346999984255078999999999999999999998799-99899999999999999666
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGI-ISSEEAQKIIEGLKVIRAEI 79 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gi-i~~~~~~~i~~al~~i~~~~ 79 (473)
|++||.++||..+|+ |...+...+.++.|.+..+++.|| ||++.+..|......+..+-
T Consensus 1 mi~RY~~~em~~ifS--------------------~e~~~~~~l~vE~ala~aqaelGi~i~~~a~~~i~a~~~~~d~~~ 60 (436)
T cd03302 1 LASRYASKEMVYIFS--------------------PRKKFSTWRKLWLWLAEAEKELGLDISDEQIEEMKANVENIDFEI 60 (436)
T ss_pred CCCCCCCHHHHHHHC--------------------HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHH
T ss_conf 986638699998819--------------------469999999999999999998299999999999997054489999
Q ss_pred HCCCEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 45980015664637999999997311102342014410112378879999999999998677889999974477301452
Q gi|254780370|r 80 VDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTI 159 (473)
Q Consensus 80 ~~~~~~~~~~~edvh~~iE~~l~~~~G~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~ 159 (473)
.. .. ...-..|| .++...+.+.+|+.++|+|+|.|++|+++|++.|++|+++..+.+.|..+.++|.++|++|++|+
T Consensus 61 i~-~~-e~~t~Hdv-~a~v~~l~~~~~~~~~~vH~G~TSqDI~DTa~~L~lk~al~~i~~~l~~l~~~L~~lA~~~~~t~ 137 (436)
T cd03302 61 AA-AE-EKKLRHDV-MAHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLP 137 (436)
T ss_pred HH-HH-HHHHCCCC-HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99-99-97719894-89999999857614471663754024577999999999999999999999999999999966873
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCC-------HHHHHHHCCCC
Q ss_conf 0016653011334445678888887862069899987454233565320335666----789-------98963103876
Q gi|254780370|r 160 MPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSF----PID-------RHFTAKELGFR 228 (473)
Q Consensus 160 mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~----~id-------r~~~a~~LGf~ 228 (473)
|+||||+|||+|||||++++.|+++|.|+.+||.++.+++.++.+|++.++..++ +.| .+.+++.|||.
T Consensus 138 m~gRTHgQ~A~PtTfG~k~a~w~~el~r~~~rL~~~~~~~~~~~~~GAvGt~a~~~~~~~~~~~~~~~l~~~~a~~lgl~ 217 (436)
T cd03302 138 TLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFK 217 (436)
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 22200677440028999999999999999999999996122213678733012045424674688999999999734887
Q ss_pred CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 4347856730278864246777688766489999999998412456154-045545653004443360138998766899
Q gi|254780370|r 229 EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVR-LSDAFSTGSSIMPQKRNPDGAELVRAKTGR 307 (473)
Q Consensus 229 ~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~-l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~ 307 (473)
.+.+ ...++.+||+++|++++++.++..++|||.|+++|++ ++++. ...+-++|||+|||||||+.+|.+.|.+..
T Consensus 218 ~~~~-~~~q~~~Rd~~ae~~~~La~ia~~l~kia~di~~l~~--~~Ev~E~f~~gq~GSStMPHKrNPi~~E~i~~lar~ 294 (436)
T cd03302 218 KVYP-VTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLAN--LKEVEEPFEKGQIGSSAMPYKRNPMRSERCCSLARH 294 (436)
T ss_pred CCCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6788-8567687378999999999999999988999998815--981753048999875877745175989999999999
Q ss_pred HHHHHHHHHHHHHCCCCHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCC--CCCCCHHHHHHHH
Q ss_conf 97523358767404840000100100---557988999999865676523058666521012112--3784439999999
Q gi|254780370|r 308 INGALLSLLTIMKGLPLAYSKDMQED---KEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAA--TKSHSTATDLADW 382 (473)
Q Consensus 308 ~~g~~~~~~~~~~~~p~~~~rDlq~~---~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~--~~~~~~AT~lAd~ 382 (473)
+.|.....+..+ ...+|+||+... +..+++++..+..++..+..++++++||+++|++++ ..|++.++.+...
T Consensus 295 ~~~~~~~~~~~~--~~~whERd~~~s~~er~~lpe~~~l~~~~l~~~~~~l~~L~V~~~~M~~Nl~~~~gli~se~vm~~ 372 (436)
T cd03302 295 LMNLASNAAQTA--STQWFERTLDDSANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMA 372 (436)
T ss_pred HHHHHHHHHHHH--HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 998568999875--554334678620899889889999999999999999807989899999999760688999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHCCCC------HHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99853999799999999999999982989------689899999940011326899965999999
Q gi|254780370|r 383 LVSHAGLPFREAHYITGCTVSLAEKNQCE------LAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 383 Lv~~~GipFReAH~iVg~lV~~A~~~g~~------l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
|+ ++|+++.+||++|.++++.|.++++. |.|+...| +.+ +...+++.++|||.+++
T Consensus 373 L~-~~g~gR~~Ah~~V~~~a~~a~~~~~~~~~~~~l~e~~~~d-~~~-~l~~~el~~lldP~~yl 434 (436)
T cd03302 373 AV-KAGGDRQDAHERIRVLSHQAAAVVKQEGGDNDLIERIKND-AYF-KPIWDELDALLDPKTFI 434 (436)
T ss_pred HH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCC-CCC-CCCHHHHHHHHCHHHCC
T ss_conf 98-7699999999999999999999988546761299997549-877-99999999864988436
No 29
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=0 Score=492.33 Aligned_cols=412 Identities=21% Similarity=0.257 Sum_probs=346.5
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 33320332384346999984255-07899999999999999999999879999899999999999999666459800156
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR 88 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~ 88 (473)
.+.+|| ..+...++.|.-| ..+...++.....+.+|-|....+.|.++++.++.|.+|+++|...-..++|++++
T Consensus 19 ~~~~yG----~qT~Ra~~nF~i~~~~~~~~~I~a~~~iK~aaA~~N~~~g~l~~~~~~aI~~A~~ei~~g~~~~~Fpvdv 94 (473)
T PRK13353 19 ADAYYG----IQTLRAVENFPITGYKIHEELIRAFAIVKKAAALANMDLGRLERNKAGAIVEAADEILDGKLHDQFIVDP 94 (473)
T ss_pred CCCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 756314----9899999774988888999999999999999999999828999999999999999998599712588754
Q ss_pred CCC----HHHHHHHHHHH----HHHH-CCCC--CCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 646----37999999997----3111-0234--201------44101123788799999999999986778899999744
Q gi|254780370|r 89 DLE----DIHMNIEARLT----SLIG-SIAG--KMH------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDK 151 (473)
Q Consensus 89 ~~e----dvh~~iE~~l~----~~~G-~~~~--~lH------~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~ 151 (473)
-.. -..||+...+. +.+| ..|. .+| ++.|+||.++|++++.....+..|.+.|..|+++|..+
T Consensus 95 ~Q~GsGTstNMN~NEVian~a~e~lg~~~g~~~~vhPnDhVN~~QStND~~PTA~~ia~~~~~~~L~~~l~~L~~~L~~K 174 (473)
T PRK13353 95 IQGGAGTSMNMNANEVIANRALELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIATLNLLEGLLQAMGALHDVFELK 174 (473)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11798653534099999999999947877888874976433343457636767999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHH
Q ss_conf 77301452001665301133444567888888786206989998745423356532033566678998-------96310
Q gi|254780370|r 152 AEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKE 224 (473)
Q Consensus 152 A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~ 224 (473)
|++|++++|+||||+|+|+|+|||++|++|++++.|+.+||.++++++.++|||++|+ ||+++.+++ .++++
T Consensus 175 A~e~~~ivkiGRTHlQdAvPiTlGqef~~~a~~l~r~~~Rl~~~~~~l~~l~lGGTAV-GTG~n~~~~~~~~v~~~L~~~ 253 (473)
T PRK13353 175 AEEFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSREHLYEVNLGATAV-GTGLNADPEYIEAVVKHLAAI 253 (473)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHH
T ss_conf 9987411212522364553412799999999999999999999999988744787012-679999826999999989987
Q ss_pred CCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 3876-434785673027886424677768876648999999999841---245615404554565300444336013899
Q gi|254780370|r 225 LGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300 (473)
Q Consensus 225 LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ 300 (473)
+|+. .+..|.+++++++|.++|+.++++.++++|+|||+||++|+| .|+|++.+| +.++||||||||+||+.+|.
T Consensus 254 tgl~~~~a~n~~~a~~~~D~~ve~s~~L~~lA~~L~KIanDiRlL~SGPr~GlgEi~lP-a~Q~GSSIMPgKvNPv~~E~ 332 (473)
T PRK13353 254 TGLPLVGAEDLVDATQNTDAYVEVSAALKVCAMNLSKIANDLRLLASGPRTGLGEINLP-AVQPGSSIMPGKVNPVMPEV 332 (473)
T ss_pred HCCCCEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECC-CCCCCCCCCCCCCCCHHHHH
T ss_conf 19996247888999967589999999999999999999999999757865560134569-99895888898869779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHH
Q ss_conf 87668999752335876740484000010010055798899999986567652-30586665210121123784439999
Q gi|254780370|r 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDL 379 (473)
Q Consensus 301 ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~l 379 (473)
+.+.|.+++|+..++......-.+..|--.......++++++.+..++..+.. ++.||++|+++|++.++++..++|.|
T Consensus 333 v~~va~qV~Gnd~ti~~a~~~G~leLNv~~Pvi~~~ll~si~lL~~a~~~f~~~ci~Gi~~n~e~~~~~l~~S~~LvTaL 412 (473)
T PRK13353 333 INQIAFQVIGNDHTICLAAEAGQLELNVMEPVIAFNLLQSISILTNGFRAFTDNCVKGIEANEERCKEYVEKSVGIITAL 412 (473)
T ss_pred HHHHHHHHHCCHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHC
T ss_conf 99999999651867665242554565235407899999999999999999999988458888999999998480517660
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r 380 ADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 380 Ad~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
+-.+ +|+.+.+++++|.++|+++.|+.++. ..+.++++.++|||++..
T Consensus 413 ~p~i----------GY~~aa~iak~A~~~g~slre~~le~----~~lseeeld~lldP~~m~ 460 (473)
T PRK13353 413 NPHI----------GYEAAARVAKEAIATGQSVRELCLEN----GVLTEEELDLILDPFEMT 460 (473)
T ss_pred CCHH----------HHHHHHHHHHHHHHHCCCHHHHHHHC----CCCCHHHHHHHCCHHHHC
T ss_conf 5266----------39999999999999499899999884----999999999867999847
No 30
>cd01596 Aspartatase_like Aspartase_like. This group contains proteins similar to aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=0 Score=477.59 Aligned_cols=406 Identities=22% Similarity=0.262 Sum_probs=329.1
Q ss_pred HHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCC
Q ss_conf 3320332384346999984255-078999999999999999999998799998999999999999996664598001566
Q gi|254780370|r 11 NQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRD 89 (473)
Q Consensus 11 ~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~ 89 (473)
+.+|| ..+...++.|.-| ..+...++.....+.+|-|....+.|.++++.++.|.+|+++|......++|+.++-
T Consensus 15 ~~~yG----~qT~Ra~~NF~is~~~~~~~~I~a~~~vK~AaA~aN~~~g~L~~~~~~aI~~Ac~ei~~g~~~~~F~vdv~ 90 (450)
T cd01596 15 DAYYG----AQTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQACDEVIAGKLDDQFPLDVW 90 (450)
T ss_pred CCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHCEEHHH
T ss_conf 56315----98999996759889889999999999999999999998099999999999999999984996430411032
Q ss_pred CC----HHHHHHHHHHHH----HHH-CCCCC-CC------CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 46----379999999973----111-02342-01------441-011237887999999999999867788999997447
Q gi|254780370|r 90 LE----DIHMNIEARLTS----LIG-SIAGK-MH------TAR-SRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKA 152 (473)
Q Consensus 90 ~e----dvh~~iE~~l~~----~~G-~~~~~-lH------~gr-SrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A 152 (473)
.. -..||+...+.. ..| +.|.+ +| .+. |.||..+|+.++.+...+..+.+.|..|+++|..+|
T Consensus 91 Q~GsGTstNMN~NEVIAn~A~e~lg~~~g~~~~~~~d~~~~~qsSnd~~~~a~~~~a~~~~~~~L~~al~~L~~~l~~Ka 170 (450)
T cd01596 91 QTGSGTSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDAKA 170 (450)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 07897645441899999999998388778777889832356678888299999999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHHC
Q ss_conf 7301452001665301133444567888888786206989998745423356532033566678998-------963103
Q gi|254780370|r 153 EEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKEL 225 (473)
Q Consensus 153 ~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~L 225 (473)
++|+|++|+||||+|+|+|+|||+++++|++++.||.+||.+++++++++|||++|+ ||+++.++. .+++.+
T Consensus 171 ~e~~~iik~GRTHLQdA~PiTlGqef~~~a~~l~r~~~RL~~~~~~l~~l~lGGtAv-GTG~na~~~~~~~v~~~L~~~t 249 (450)
T cd01596 171 EEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLRELNLGGTAV-GTGLNAPPGYAEKVAAELAELT 249 (450)
T ss_pred HHHCCCEEECCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-ECCCCCCHHHHHHHHHHHHHHH
T ss_conf 974697643544464163352899999999999999999999999998753887621-0788898127899999999985
Q ss_pred CCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 876-434785673027886424677768876648999999999841---2456154045545653004443360138998
Q gi|254780370|r 226 GFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAELV 301 (473)
Q Consensus 226 Gf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~i 301 (473)
||. .+..|.++++++||.++|+.++++.++++|+|||+||++|+| ++||+|.+| +.++||||||||+||+.+|.+
T Consensus 250 gl~~~~a~n~~~a~~~rD~~ve~s~~L~~lA~~L~KIanDirll~SGPr~gl~Ei~lP-~~q~GSSiMPgKvNPv~~E~v 328 (450)
T cd01596 250 GLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLGEINLP-ANQPGSSIMPGKVNPVIPEAV 328 (450)
T ss_pred CCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC-CCCCCCCCCCCCCCCHHHHHH
T ss_conf 9997137879999818839999999999999999999999999716876786123469-999988888999897799999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHHH
Q ss_conf 7668999752335876740484000010010055798899999986567652-305866652101211237844399999
Q gi|254780370|r 302 RAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLA 380 (473)
Q Consensus 302 r~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~lA 380 (473)
.+.|.+++|+..++.....+-.+..|--.......+++++..+..++..+.. +|+++++|+++|++.++++.+++|.|+
T Consensus 329 ~~v~~qViGnd~ti~~A~~~G~lELNv~~Plia~~ll~si~lL~~a~~~f~~~ci~Gi~vn~e~~~~~l~~S~~LvTaL~ 408 (450)
T cd01596 329 NMVAAQVIGNDTAITMAGSAGQLELNVFKPVIAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALN 408 (450)
T ss_pred HHHHHHHHCCHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCCCHHHHHC
T ss_conf 99899996351787787630236762034389999999999999999999999876589989999999984830898833
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCC
Q ss_conf 99998539997999999999999999829896898999999400113268999659
Q gi|254780370|r 381 DWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILK 436 (473)
Q Consensus 381 d~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ld 436 (473)
.++ | |+.+.+++++|.++|+++.|+.++. ....++++.++||
T Consensus 409 p~i----G------Y~~aa~Iak~A~~~g~sl~e~~le~----~~ls~ee~d~lld 450 (450)
T cd01596 409 PHI----G------YEKAAEIAKEALKEGRTLREAALEL----GLLTEEELDEILD 450 (450)
T ss_pred CHH----H------HHHHHHHHHHHHHHCCCHHHHHHHC----CCCCHHHHHHHHC
T ss_conf 186----3------9999999999999399899999885----9999999999749
No 31
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=0 Score=456.70 Aligned_cols=417 Identities=23% Similarity=0.285 Sum_probs=347.2
Q ss_pred HHHCCCCCCCCHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECC
Q ss_conf 3320332384346999984255-0789--999999999999999999987999989999999999999966645980015
Q gi|254780370|r 11 NQMWGGRFSSSPSWIMEKINVS-IDFD--KKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFS 87 (473)
Q Consensus 11 ~~lW~grf~~~~~~~~~~~~~s-~~~D--~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~ 87 (473)
+.+|| ..+...++.|.-| ..++ ..++.....+.+|-|....+.|+++++.++.|.+|+++|.....+++|+++
T Consensus 20 ~~~yG----aqTqRa~~NF~isg~~~~~~~~~I~A~~~iK~AaA~aN~~lg~L~~~~a~aI~~A~~ei~~G~~~~~Fpvd 95 (471)
T PRK12273 20 DAYYG----IQTLRAVENFPISGVKISDYPELIRALAMVKKAAALANKELGLLDEEKADAIVAACDEILAGKLHDQFVVD 95 (471)
T ss_pred CCCHH----HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 67315----98999997769889888877899999999999999999982899999999999999999849862034020
Q ss_pred CCCC----HHHHHHHHHHH----HHHH-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6646----37999999997----3111-02342--01------4410112378879999999999998677889999974
Q gi|254780370|r 88 RDLE----DIHMNIEARLT----SLIG-SIAGK--MH------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLD 150 (473)
Q Consensus 88 ~~~e----dvh~~iE~~l~----~~~G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~ 150 (473)
+-.. -..||+...+. +..| ..|.| +| ++.|+||.++|++++..-..+..+.+.|..|+++|.+
T Consensus 96 v~QtGsGTstNMNvNEVIAnrA~e~lg~~~G~~~~vHPNDhVN~~QSsND~~PTA~~ia~~~~~~~L~pal~~L~~~l~~ 175 (471)
T PRK12273 96 VIQGGAGTSTNMNANEVIANRALELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLIEAFEA 175 (471)
T ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10278876667628999999999993887788887483258763246666320899999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-------HHH
Q ss_conf 4773014520016653011334445678888887862069899987454233565320335666789989-------631
Q gi|254780370|r 151 KAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHF-------TAK 223 (473)
Q Consensus 151 ~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~-------~a~ 223 (473)
++.+|.+++++||||+|+|+|+|||+.|++|++.+.|+.+||..+.+++...|||++|+ ||+++.++++ +++
T Consensus 176 Ka~~f~~iiK~GRTHLqDA~PitlGQef~aya~~l~~~~~rl~~~~~~l~~l~lGGTAV-GTGlna~~~f~~~v~~~L~~ 254 (471)
T PRK12273 176 KAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALAEDIKRLEEAAELLREVNLGATAI-GTGINAPPGYAELVVKKLAE 254 (471)
T ss_pred HHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHHHHHHH
T ss_conf 99997323530520156653312077899999999999999999999987536875100-46778882089999999999
Q ss_pred HCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 03876-434785673027886424677768876648999999999841---24561540455456530044433601389
Q gi|254780370|r 224 ELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAE 299 (473)
Q Consensus 224 ~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E 299 (473)
..|+. .+..|.+++++++|.++++.+.+..++++|.|||+||++|+| .++|++.|| +.+.||||||+|+||+.+|
T Consensus 255 ~tgl~f~~a~n~f~a~~~~D~~v~~sg~Lk~lA~~L~KIAnDlRlL~SGPr~GlgEi~LP-a~qpGSSIMPGKVNPv~~E 333 (471)
T PRK12273 255 ITGLPLVPAEDLIEATQDCGAFVEVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP-AVQAGSSIMPGKVNPVIPE 333 (471)
T ss_pred HHCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC-CCCCCCCCCCCCCCCHHHH
T ss_conf 978996457889999728819999999999999999999988888706876675400378-8999877789998967899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHH
Q ss_conf 987668999752335876740484000010010055798899999986567652-3058666521012112378443999
Q gi|254780370|r 300 LVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATD 378 (473)
Q Consensus 300 ~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~ 378 (473)
.+...|.+++|+..++.....+-.+..|--.--.-..++++++.+..++..+.+ +|.++++|+++|++.++++.+++|.
T Consensus 334 ~~~mv~~qViGnd~aIt~A~~~G~~ELNv~~PlIa~nll~Si~lL~~a~~~f~~~ci~Gi~~n~e~~~~~l~~S~~lvTa 413 (471)
T PRK12273 334 VVNQVCFQVIGNDLTVTMAAEAGQLQLNVMEPVIAYALFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTA 413 (471)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHHHH
T ss_conf 99999999974459999985455067651360999999999999999999999987565777899999999748324755
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCC
Q ss_conf 9999998539997999999999999999829896898999999400113268999659999996214899999
Q gi|254780370|r 379 LADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTC 451 (473)
Q Consensus 379 lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGta 451 (473)
|+.++ | |+.+.+++++|.++|+++.|+.++. .-..++++.+++||++.. .+|-++
T Consensus 414 L~p~I----G------Yd~aa~iak~A~~~g~slre~~le~----~~ls~~e~d~ildP~~mt----~pg~~~ 468 (471)
T PRK12273 414 LNPYI----G------YENAAEIAKEALETGKSVRELVLER----GLLTEEELDDILSPENMT----HPGYKG 468 (471)
T ss_pred CCCHH----C------HHHHHHHHHHHHHHCCCHHHHHHHC----CCCCHHHHHHHCCHHHHC----CCCCCC
T ss_conf 34501----5------7999999999999299899999885----999999999866999847----999898
No 32
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=0 Score=441.11 Aligned_cols=417 Identities=17% Similarity=0.203 Sum_probs=347.2
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 33320332384346999984255-07899999999999999999999879999899999999999999666459800156
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVS-IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR 88 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s-~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~ 88 (473)
.+.+|| ..+...+..|.-| ..+...++.....+.+|-|....+.|.++++.++.|.+|+++|...-.+++|+++.
T Consensus 16 ~d~~yG----~qT~Ra~~NF~is~~~~p~~~I~A~~~vKkAaA~aN~~~G~L~~~~~~aI~~Acdei~~g~~~~~Fpvdv 91 (464)
T PRK12425 16 EDAYWG----AQTQRSLINFAIGKERMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQAADEVLDGQHDDQFPLVV 91 (464)
T ss_pred CCCCHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 655304----9899999775888887999999999999999999999809999999999999999998599702488711
Q ss_pred CCC----HHHHHHHHHHH----HHHH-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 646----37999999997----3111-02342--01------441011237887999999999-9998677889999974
Q gi|254780370|r 89 DLE----DIHMNIEARLT----SLIG-SIAGK--MH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTILLD 150 (473)
Q Consensus 89 ~~e----dvh~~iE~~l~----~~~G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L~~ 150 (473)
-.. -..||+...+. |..| ..|.| +| ++.|+||.++|++++..-..+ ..+.+.|..|+++|.+
T Consensus 92 ~Q~GsGTstNMNvNEVIAnrA~e~lg~~~G~~~~vhPNDhVN~sQStND~~PTA~~ia~~~~l~~~L~pal~~L~~~l~~ 171 (464)
T PRK12425 92 WQTGSGTQSNMNVNEVIAGRANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSSGLAE 171 (464)
T ss_pred EECCCCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 00798412005199999999999847777888875943223554567647877999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHH
Q ss_conf 477301452001665301133444567888888786206989998745423356532033566678998-------9631
Q gi|254780370|r 151 KAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAK 223 (473)
Q Consensus 151 ~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~ 223 (473)
+|.+|.++++.||||+|+|+|+|||+.|++|+..+.|+.+||..+.+++...|||++|+ ||+++..+. .+++
T Consensus 172 Ka~ef~~iiK~GRThLqDAvP~tlGQef~~~a~~l~~~~~rl~~~~~~l~~l~lGgTAV-GTGina~~~f~~~~~~~L~~ 250 (464)
T PRK12425 172 LSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAVYELAQGGTAV-GTGLNAPKGFAEAIAAELAA 250 (464)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHH
T ss_conf 99986133012634045567363788999999999999999999999999852776211-46888857699999999999
Q ss_pred HCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 03876-434785673027886424677768876648999999999841---24561540455456530044433601389
Q gi|254780370|r 224 ELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAE 299 (473)
Q Consensus 224 ~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E 299 (473)
+.|+. .+..|.+++++++|.++++.+.+..++++|.|||+||++++| .++|++.|| +.+.||||||+|+||+.+|
T Consensus 251 ~tgl~~~~a~n~~~a~~~~d~~v~~sg~Lk~lA~~L~KIanDlRlL~SGPr~GlgEi~LP-~~qpGSSIMPGKVNPvi~E 329 (464)
T PRK12425 251 LSGLPFVTAPNKFAALAGHEPLTSLSGALKTLAVALMKIANDLRLLGSGPRAGLAEVRLP-ANEPGSSIMPGKVNPTQCE 329 (464)
T ss_pred HHCCCCEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHH
T ss_conf 749996347879999717868999999999999999999988777637865676512489-9999877789987988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHH
Q ss_conf 987668999752335876740484000010010055798899999986567652-3058666521012112378443999
Q gi|254780370|r 300 LVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATD 378 (473)
Q Consensus 300 ~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~ 378 (473)
.+...|.+|+|+..++.....+-.+..|--....-..++++++.+..++..+.. +|.++++|+++|++.++++.+++|.
T Consensus 330 ~v~qv~~qViGnd~tit~a~~~Gq~eLNv~~Plia~nll~Si~lL~~a~~~f~~~ci~Gi~~N~e~~~~~~~~S~~lvTa 409 (464)
T PRK12425 330 ALSMLACQVMGNDATIGFAASQGHLQLNVFKPVIIHNLLQSIRLLADGCRNFNQHCVAGLEPDAEQMAAHLERGLMLVTA 409 (464)
T ss_pred HHHHCCEEEECCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHCHHHHHH
T ss_conf 86527415454729999877604457642027888743679999999999999998762888899999999847568876
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf 999999853999799999999999999982989689899999940011326899965999999621489999
Q gi|254780370|r 379 LADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGT 450 (473)
Q Consensus 379 lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGt 450 (473)
|.-++ | |+.+.+++++|.++|+++.|+.++ ...+.++++.+++||++.+ .+|++
T Consensus 410 L~P~I----G------Y~~aa~Iak~A~~~g~sl~e~~le----~g~ls~ee~d~il~P~~m~----~pg~~ 463 (464)
T PRK12425 410 LNPHI----G------YDKAAEIAKKAYAEGTTLREAALE----LGYLTEEQFDQWVRPENML----EAGGH 463 (464)
T ss_pred CCCHH----C------HHHHHHHHHHHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHHC----CCCCC
T ss_conf 03401----6------699999999999939989999988----5999999999867999846----89999
No 33
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=0 Score=423.73 Aligned_cols=327 Identities=18% Similarity=0.198 Sum_probs=262.5
Q ss_pred HHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 32033238434699998425507899999999999999999999879999899999999999999666459800156646
Q gi|254780370|r 12 QMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE 91 (473)
Q Consensus 12 ~lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~e 91 (473)
.++++||+ ..++-.-|+ |...+...++++.|.+.++++.|+||++.++.|.++......++..-. .....
T Consensus 9 ~l~~~~y~--~~em~~ifS-----de~~~~~~l~vE~Ala~Aqa~lG~IP~~aa~~I~~~~~~~~~d~~~l~---~~~~~ 78 (353)
T PRK05975 9 PFLSGLFG--DDEIAALFS-----AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAACETFEPDLAALR---HATAR 78 (353)
T ss_pred HHHHHHCC--CHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHH---HHHHH
T ss_conf 76662029--999998809-----199999999999999999998799999999999986013357899999---89874
Q ss_pred HHH--HHHHHHHHHHHH-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 379--999999973111-02342014410112378879999999999998677889999974477301452001665301
Q gi|254780370|r 92 DIH--MNIEARLTSLIG-SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQT 168 (473)
Q Consensus 92 dvh--~~iE~~l~~~~G-~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~ 168 (473)
|.| .++.+.+.+.+| +.++|+|+|.|+||++||++.|++|+++..+.++|..+++.|.++|.+|++|+|+||||+||
T Consensus 79 ~g~~v~a~v~~l~~~~~~~a~~~vH~GaTSqDV~DTa~~L~lr~al~~i~~~L~~l~~~L~~la~~h~~t~m~GRThgq~ 158 (353)
T PRK05975 79 DGVVVPALVRQLRAAVGEEAAAHVHFGATSQDVIDTSLMLRLKAAVEILAARLGALIEALDALEATFGGNALTGHTRMQA 158 (353)
T ss_pred CCCCHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC
T ss_conf 48618999999998658676736128985421787899999999999999999999999999999861675000314762
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----HHHHHHHCCCCCCC-CCHHHHCCCCCC
Q ss_conf 1334445678888887862069899987454233565320335666789----98963103876434-785673027886
Q gi|254780370|r 169 AQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID----RHFTAKELGFREPT-RNSIDSVSDRDF 243 (473)
Q Consensus 169 A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~id----r~~~a~~LGf~~~~-~ns~dav~sRd~ 243 (473)
|+|||||++++.|++++.|+++||.++.+++..+.+|++.|+.+.++-+ ++.+++.|||..+. || ++||+
T Consensus 159 A~P~TfG~k~a~w~~el~r~~~rl~~~~~~~~~~~~~GAvGt~a~~~~~~~~v~~~~a~~LgL~~~~~~~-----~~Rd~ 233 (353)
T PRK05975 159 AIPITVADRLASWRAPLARHRDRLEALRPDVFPVQFGGAAGTLEKLGGKAAAVRAELAKRLGLEDPPQWH-----SQRDF 233 (353)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCHHHHHHHHHHHCCCCCCCCCC-----CCCCH
T ss_conf 6011599999999999999999999999866665046621210035762899999999875999987501-----02132
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 42467776887664899999999984124561540455456530044433601389987668999752335876740484
Q gi|254780370|r 244 ILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLP 323 (473)
Q Consensus 244 ~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p 323 (473)
++|++++++.++.+++|||+|++++++.| + |+.++-.+|||+|||||||+.+|.+.+.+..+.+....+.. +++
T Consensus 234 ~~e~~~~La~ia~sl~kia~di~~l~~~~-~--E~~~~g~~GSSaMPhKrNPi~~E~i~~laR~~~~~~~~~~~---a~~ 307 (353)
T PRK05975 234 IADFGHLLSLVTGSLGKFGQDIALMAQLG-D--EISLSGGGGSSAMPHKQNPVAAETLVTLARFNATQVSGLHQ---ALV 307 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_conf 99999999999999999999999985035-1--15357898877788765838899999999878877878987---441
Q ss_pred CHHCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 00001001---0055798899999986567652305866
Q gi|254780370|r 324 LAYSKDMQ---EDKEPVFDALETLQIIILAISAMIEDLT 359 (473)
Q Consensus 324 ~~~~rDlq---~~~~~l~~ai~~~~~~L~l~~~li~~l~ 359 (473)
.+++||.. ..|..+++++-.+..+|..+..++++|.
T Consensus 308 ~~~ER~~~~w~~Ew~~lP~~~~~~~~~L~~a~~ll~~Lv 346 (353)
T PRK05975 308 HEQERSGAAWTLEWMILPQMVAATGAALRLAAELAGNIV 346 (353)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 030046861678999999999999999999999998288
No 34
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase; InterPro: IPR012789 Proteins in this entry are 3-carboxy-cis,cis-muconate cycloisomerases, which catalyse the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate can all be converted in one step to protocatechuate. All members of the seed alignment for this entry were chosen from within protocatechuate degradation operons of at least three genes of the pathway, and from genomes with the complete pathway through beta-ketoadipate.; GO: 0047472 3-carboxy-ciscis-muconate cycloisomerase activity, 0019619 protocatechuate catabolic process.
Probab=100.00 E-value=0 Score=410.12 Aligned_cols=329 Identities=22% Similarity=0.247 Sum_probs=275.5
Q ss_pred HCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCC
Q ss_conf 2033238434699998425507899999999999999999999879-999899999999999999666459800156646
Q gi|254780370|r 13 MWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQG-IISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE 91 (473)
Q Consensus 13 lW~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~g-ii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~e 91 (473)
||+|-|+.+. ...-|+ |+..+.--+.++-|.++.++++| |||.+.++.|...+.+...|...=.. -....+
T Consensus 1 L~~g~fg~~~--~~~~fs-----D~A~l~Aml~fEaALa~A~A~~Ga~iP~~Aa~~i~a~~~~~~~D~~~L~~-~~A~~G 72 (351)
T TIGR02426 1 LLDGLFGDPA--ALELFS-----DRAFLRAMLDFEAALARAQADVGALIPAEAAEAIEAACAEAAPDLEALAE-AAAEAG 72 (351)
T ss_pred CCCCCCCCHH--HHHHCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHCC
T ss_conf 9998888407--887518-----49999999999999999885228989788999999999877877999999-986189
Q ss_pred HHHHHHHHHHHHHHH----CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 379999999973111----0234201441011237887999999999999867788999997447730145200166530
Q gi|254780370|r 92 DIHMNIEARLTSLIG----SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167 (473)
Q Consensus 92 dvh~~iE~~l~~~~G----~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q 167 (473)
.+--.+.+.|.+.+| ++++|||.|.|+||++||++.|++|++++.|..+|.+|.+.|..++.+|++|||+|||-+|
T Consensus 73 n~vipLV~~L~~~va~hd~~aa~~VH~GATSQDviDT~LML~lr~a~~l~~adl~~L~~~La~La~~hr~tpm~grTl~Q 152 (351)
T TIGR02426 73 NPVIPLVKALRKAVAEHDPEAARYVHRGATSQDVIDTALMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQ 152 (351)
T ss_pred CCCHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCC
T ss_conf 98725899888863378721251026787357699999999999999999998999999999999973778873000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCC---CCC-HHHHHHHCCCCCC--CCCHHH
Q ss_conf 1133444567888888786206989998745423356532033-----5666---789-9896310387643--478567
Q gi|254780370|r 168 TAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALA-----GTSF---PID-RHFTAKELGFREP--TRNSID 236 (473)
Q Consensus 168 ~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~-----GT~~---~id-r~~~a~~LGf~~~--~~ns~d 236 (473)
||+|||||.++.+|.+.+.|..+||..+..+....+||++||+ ++.= |.+ ++.+|+.||+..| .|||
T Consensus 153 ~A~P~T~G~k~AgWL~~v~ra~~RL~~l~~~~l~lQfGGAaGTLaa~~~~~G~~D~~~va~aLA~~LgL~~P~~pWHt-- 230 (351)
T TIGR02426 153 QAVPTTFGLKAAGWLAAVLRARDRLAALRTEALPLQFGGAAGTLAALLETRGATDALAVAAALAARLGLPLPALPWHT-- 230 (351)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--
T ss_conf 156799998863268899999999998764143101460689999850688899837899999986076778888763--
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 30278864246777688766489999999998412456154045545--6530044433601389987668999752335
Q gi|254780370|r 237 SVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFS--TGSSIMPQKRNPDGAELVRAKTGRINGALLS 314 (473)
Q Consensus 237 av~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~~~~--~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~ 314 (473)
.||+++++.+.|+.++.+|+||+.||.+++..|+|++--| +-. ||||+||||||||.++++.+.+.++.+...+
T Consensus 231 ---~R~~ia~~g~~Lal~aGalGKia~Dv~ll~~~E~gE~~EP-~~gGkGGSSaMPHKrNPV~a~~~~~aA~r~P~L~AT 306 (351)
T TIGR02426 231 ---QRDRIADFGAALALVAGALGKIAGDVALLSQTEVGEVFEP-AGGGKGGSSAMPHKRNPVGAVLLLAAARRAPGLAAT 306 (351)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ---1479999999999998656788999999987767875068-888689887881003738999999999886999999
Q ss_pred HHH-HHHCCCCHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 876-740484000010---01005579889999998656765230586
Q gi|254780370|r 315 LLT-IMKGLPLAYSKD---MQEDKEPVFDALETLQIIILAISAMIEDL 358 (473)
Q Consensus 315 ~~~-~~~~~p~~~~rD---lq~~~~~l~~ai~~~~~~L~l~~~li~~l 358 (473)
++. ++ |..++|= ++-.|..+.+.+..+..++..|..+++||
T Consensus 307 L~~aal---~~~~ERs~G~WhaEW~~Lr~l~~lT~gAl~~~~~l~~Gl 351 (351)
T TIGR02426 307 LFAAAL---AQEHERSLGGWHAEWETLRELVRLTAGALRQAAELAEGL 351 (351)
T ss_pred HHHHHH---CCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988530---211126520223201356999999999999999986039
No 35
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=0 Score=401.55 Aligned_cols=406 Identities=18% Similarity=0.182 Sum_probs=284.5
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------HHHHHHHHHHHHHHHHHHHCCCEE---
Q ss_conf 33238434699998425507899999999999999999999879999------899999999999999666459800---
Q gi|254780370|r 15 GGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIIS------SEEAQKIIEGLKVIRAEIVDGSFV--- 85 (473)
Q Consensus 15 ~grf~~~~~~~~~~~~~s~~~D~~l~~~di~~~~Ah~~~l~~~gii~------~~~~~~i~~al~~i~~~~~~~~~~--- 85 (473)
.||+++.++++-.-|+ |..+++|-+++++++...|++.+-++ .++... +.++..++......
T Consensus 13 DgRY~~~t~emr~ifS-----E~alik~r~~VEi~~l~aLa~~~~~~~i~~~~~~~~~~----l~~i~~~f~~~d~~~ik 83 (456)
T PRK09285 13 DGRYASKVAALRPIFS-----EYGLIKYRVQVEVEWLQALAAEAGIPEVPPFSAEANAF----LRAIVENFSEEDAARIK 83 (456)
T ss_pred CCCCCCCHHHHHHHCC-----HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH----HHHHHHCCCHHHHHHHH
T ss_conf 5334355689998809-----78998999999999999998365557889989999999----99988438987899999
Q ss_pred --CCCCCCHHHHHHHHHHHHHHH------CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHC
Q ss_conf --156646379999999973111------02342014410112378879999999999-998677889999974477301
Q gi|254780370|r 86 --FSRDLEDIHMNIEARLTSLIG------SIAGKMHTARSRNDQVALDLRLWIKEKTL-EITNDLKKLLTILLDKAEEHH 156 (473)
Q Consensus 86 --~~~~~edvh~~iE~~l~~~~G------~~~~~lH~grSrND~~~t~~rl~lr~~l~-~l~~~l~~l~~~L~~~A~~~~ 156 (473)
-..-..|| .++|.++.+++. +.+.|+|+|.|++|+++|+..|++|+++. .+.+.+..+++.|.++|.+|+
T Consensus 84 eiE~~t~HDV-kAvey~i~~~~~~~~~~~~~~~~iH~G~TS~DI~dta~~L~lk~al~~vi~~~l~~l~~~L~~~a~~~~ 162 (456)
T PRK09285 84 EIERTTNHDV-KAVEYFLKEKLAALPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALREIIDALKALAHEYA 162 (456)
T ss_pred HHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9874417877-899999999998732000000005535358988726999999999999999999999999999999846
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CC-CCC----HHHHHHHC
Q ss_conf 45200166530113344456788888878620698999874542335653203356------66-789----98963103
Q gi|254780370|r 157 NTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGT------SF-PID----RHFTAKEL 225 (473)
Q Consensus 157 ~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT------~~-~id----r~~~a~~L 225 (473)
+|||+||||+|||+|||||++++.|++.|.|+++||.++. ....+||+. || .+ .+| .+.+++.|
T Consensus 163 ~~~mlgRTHgQ~A~PtT~Gk~~a~~~~rl~r~~~rl~~~~---~~gKf~GAv--Gt~~A~~~~~p~~dw~~~~~~f~~~L 237 (456)
T PRK09285 163 DVPMLSRTHGQPATPTTLGKEMANVAYRLERQIKQLAAVE---ILGKINGAV--GNYNAHLAAYPEVDWHAFSREFVTSL 237 (456)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCCC--CCCHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 5631000047666341279999999999999999999988---888844454--54046777547888899999999976
Q ss_pred CCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-ECCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 876434785673027886424677768876648999999999841245615-4045545653004443360138998766
Q gi|254780370|r 226 GFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFV-RLSDAFSTGSSIMPQKRNPDGAELVRAK 304 (473)
Q Consensus 226 Gf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i-~l~~~~~~GSSiMPqKrNP~~~E~ir~~ 304 (473)
|+......+ .+.+||+++|+.++++.++..|.+||.|++.+.+- |++ +..+....|||+|||||||+.+|..-|.
T Consensus 238 GL~~~~~tT--Qi~~~D~~ae~~~~l~~i~~~l~~l~~Di~~~is~--~~~~e~~~~gevGSStMPhKrNPI~~Enaegn 313 (456)
T PRK09285 238 GLTWNPYTT--QIEPHDYIAELFDAVARFNTILIDLDRDVWGYISL--GYFKQKTKAGEIGSSTMPHKVNPIDFENSEGN 313 (456)
T ss_pred CCCCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 999888877--73663189999999999856799998999999987--77742468999715888745286035644348
Q ss_pred HHHHHHHHHHHHHHHHCCCC-HHCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCC-CHHHHHH
Q ss_conf 89997523358767404840-00010010055--79889999998656765230586665210121123784-4399999
Q gi|254780370|r 305 TGRINGALLSLLTIMKGLPL-AYSKDMQEDKE--PVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSH-STATDLA 380 (473)
Q Consensus 305 a~~~~g~~~~~~~~~~~~p~-~~~rDlq~~~~--~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~-~~AT~lA 380 (473)
++.+.+.+..+. ..+|. ..+||+.++.. .+.-++..+..++..+...+++++||+++|++++..++ ++|+.+.
T Consensus 314 l~la~~l~~~~~---~~l~~sr~qRDLtdSt~~R~igva~~~~~ia~~~~~~gl~~L~vn~~~m~~nL~~~~~ilaEav~ 390 (456)
T PRK09285 314 LGLANALLEHLA---AKLPISRWQRDLTDSTVLRNLGVAFGYSLIAYDSLLKGLSKLEVNEARLAADLDANWEVLAEPIQ 390 (456)
T ss_pred HHHHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCHHHHHHHHH
T ss_conf 999999999998---74665787775237788888776899999999999987427079899999888508306799999
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCC---CHHHHHHCCHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 99998539997999999999999999829896898999999400113---268999659999996214899999899999
Q gi|254780370|r 381 DWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVI---TSAVYDILKVESSISSRKSFGGTCAAEVLK 457 (473)
Q Consensus 381 d~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~---~~di~~~ldp~~~v~~R~s~GGtap~~V~~ 457 (473)
-.| ++.|.+ +||+.+.++.+ |+....-.+.++-.-.... .+.+ ..|+|++++ |-||+.|++
T Consensus 391 ~~l-r~~g~~--~ayE~~k~ltr-----g~~~~~~~l~~~~~~l~~~~~~k~~L-~~L~P~~Yi-------G~A~~~vd~ 454 (456)
T PRK09285 391 TVM-RRYGIE--NPYEKLKELTR-----GKRITAEALQEFIDGLDLPEEAKARL-KALTPANYI-------GLAAELADE 454 (456)
T ss_pred HHH-HHHCCC--CHHHHHHHHHC-----CCCCCHHHHHHHHHHCCCCHHHHHHH-HHCCCHHCC-------CCHHHHHHH
T ss_conf 999-980897--79999999865-----67666899999998179998999999-829934003-------129999864
Q ss_pred H
Q ss_conf 9
Q gi|254780370|r 458 Q 458 (473)
Q Consensus 458 ~ 458 (473)
.
T Consensus 455 v 455 (456)
T PRK09285 455 I 455 (456)
T ss_pred C
T ss_conf 4
No 36
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=391.30 Aligned_cols=405 Identities=22% Similarity=0.270 Sum_probs=340.3
Q ss_pred CHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCC----HH
Q ss_conf 346999984255-0789--9999999999999999999879999899999999999999666459800156646----37
Q gi|254780370|r 21 SPSWIMEKINVS-IDFD--KKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE----DI 93 (473)
Q Consensus 21 ~~~~~~~~~~~s-~~~D--~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~e----dv 93 (473)
.+-..++.|.-| ...+ ..+......+.+|-+.+..+.|.||++-+++|.+|+++|....-.++|+.++-.+ .+
T Consensus 25 ~TlRA~eNF~Is~~~~~~~p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~ACDeil~Gk~~dqFvvD~~QGGAGTS~ 104 (471)
T COG1027 25 HTLRAVENFPISGLKISDVPEFIRAMAMVKKAAALANKELGALPKEIADAIVKACDEILDGKCHDQFVVDVYQGGAGTST 104 (471)
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCC
T ss_conf 78778863777688666448999999999999998655517787789999999999997585511043001116877552
Q ss_pred HHH----HHHHHHHHHH-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999----9999973111-02342--01------44101123788799999999999986778899999744773014520
Q gi|254780370|r 94 HMN----IEARLTSLIG-SIAGK--MH------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIM 160 (473)
Q Consensus 94 h~~----iE~~l~~~~G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 160 (473)
+|+ |-+.-.|..| +-|.| +| ++.|+||..+|++|+.+-..+..+...+..|++++..++.++.++++
T Consensus 105 NMN~NEVIAN~AlE~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~L~~al~~L~~af~~Ka~EF~~ilK 184 (471)
T COG1027 105 NMNANEVIANRALELLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILK 184 (471)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 56389999999999856777750356875534300035643305899999999999999999999999999999865552
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHHHCCCC-CCCC
Q ss_conf 01665301133444567888888786206989998745423356532033566678998-------963103876-4347
Q gi|254780370|r 161 PGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKELGFR-EPTR 232 (473)
Q Consensus 161 pg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~~LGf~-~~~~ 232 (473)
+||||+|+|.|+|+|+.|.+|+..|.||..|+.++.+++...-||++|+ ||+++.++. .+++..|+. .+..
T Consensus 185 mGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAi-GTGiNa~~~Y~~~vv~~l~evtg~~~~~A~ 263 (471)
T COG1027 185 MGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAI-GTGINAPKGYIELVVKKLAEVTGLPLVPAE 263 (471)
T ss_pred CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE-CCCCCCCHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 2745413446601314679999999999999999998888505785011-467689843799999999997588875512
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 85673027886424677768876648999999999841---245615404554565300444336013899876689997
Q gi|254780370|r 233 NSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRIN 309 (473)
Q Consensus 233 ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~ 309 (473)
|-++++++.|.++++.+++..+++.|||+|+||++++| +..++|.|| +.+.||||||.|.||+++|.+...|..++
T Consensus 264 ~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP-~~Q~GSSIMPgKVNPVipEvvnQvcf~Vi 342 (471)
T COG1027 264 NLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLP-AVQAGSSIMPGKVNPVIPEVVNQVCFKVI 342 (471)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 58988706537999999999999999998625655326975675632477-77899877888768415999999999996
Q ss_pred HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 52335876740484000010010055798899999986567652-30586665210121123784439999999998539
Q gi|254780370|r 310 GALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAG 388 (473)
Q Consensus 310 g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~G 388 (473)
|+-+++..+..+-.+.-|.-...--..+|+|+..+..++..+.+ +|.+++.|+++|++.+.++...+|.|.-++
T Consensus 343 GnD~tit~AaeaGQLqLNvmePvI~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~~v~nSigivTaLnp~i----- 417 (471)
T COG1027 343 GNDTTITMAAEAGQLQLNVMEPVIAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYI----- 417 (471)
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC-----
T ss_conf 514788998871434465010899999999999999999999999864130379999999984467887613101-----
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99799999999999999982989689899999940011326899965999999
Q gi|254780370|r 389 LPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 389 ipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
.|+-+.++++.|.+.|++..++.++. .-+.++++.++|+|++..
T Consensus 418 -----Gy~~~~~iaK~a~~tgksv~evvLe~----g~Lteeel~~Il~~~~m~ 461 (471)
T COG1027 418 -----GYENAAIIAKEALETGKSVREVVLER----GLLTEEELDDILSPENMT 461 (471)
T ss_pred -----CCHHHHHHHHHHHHCCCCHHHHHHHH----CCCCHHHHHHHHCHHHCC
T ss_conf -----51178899999997488599999872----798899999870956317
No 37
>cd01598 PurB PurB: PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This group contains proteins similar to EcASL, the product of the gene purB in Escherichia coli. ASL is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=0 Score=401.19 Aligned_cols=384 Identities=20% Similarity=0.198 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHH--HHHHHHHHHHHHHHHHCCCEE-----CCCCCCHHHHHHHHHHHHHHH--
Q ss_conf 99999999999999999999879999899--999999999999666459800-----156646379999999973111--
Q gi|254780370|r 36 DKKLFEQDILGSKVHTTMLAKQGIISSEE--AQKIIEGLKVIRAEIVDGSFV-----FSRDLEDIHMNIEARLTSLIG-- 106 (473)
Q Consensus 36 D~~l~~~di~~~~Ah~~~l~~~gii~~~~--~~~i~~al~~i~~~~~~~~~~-----~~~~~edvh~~iE~~l~~~~G-- 106 (473)
+..+++|-+.++++++..|++.|.|+.-. ...-.+.|..|..++...... -..-..|| .++|.++.+++.
T Consensus 7 E~alik~rv~VEi~~l~~L~~~~~i~~~~~~~~~~~~~l~~i~~~f~~~d~~~Ik~iE~~tnHDV-kAvey~i~e~~~~~ 85 (425)
T cd01598 7 EYALIKYRVQVEVEWLIALSNLEEIPEVPPLTKEELKFLRAIIENFSEEDALRIKEIEATTNHDV-KAVEYFLKEKFETL 85 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCE-EEHHHHHHHHHHHC
T ss_conf 68999999999999999996579876788789999999999997389989999999972518996-45199999998754
Q ss_pred ----CCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----02342014410112378879999999999-9986778899999744773014520016653011334445678888
Q gi|254780370|r 107 ----SIAGKMHTARSRNDQVALDLRLWIKEKTL-EITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAY 181 (473)
Q Consensus 107 ----~~~~~lH~grSrND~~~t~~rl~lr~~l~-~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~ 181 (473)
+.+.|+|+|.|++|+++|++.|++|+++. .+.+.+..+.+.|.++|.+|++|||+||||+|||+|||||++++.|
T Consensus 86 ~~l~~~~e~IHfG~TSqDI~dta~~L~lk~a~~~vi~~~l~~l~~~L~~lA~~~~~tpmlgRTHGQ~A~PtTfGke~a~~ 165 (425)
T cd01598 86 GLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVF 165 (425)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 12134433356466488898799999999999999988899999999999998545631104217766340199999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC------CCC-CC----HHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHH
Q ss_conf 8878620698999874542335653203356------667-89----989631038764347856730278864246777
Q gi|254780370|r 182 VEMFGRDISRFFDSIERLDECPLGAAALAGT------SFP-ID----RHFTAKELGFREPTRNSIDSVSDRDFILECLSH 250 (473)
Q Consensus 182 ~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT------~~~-id----r~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~ 250 (473)
++.+.|+++||.+.. ....+|+ |+ || .+| +| .+.+++.||+......+ ++.+||+++|+.++
T Consensus 166 ~~rl~r~~~rL~~~~---~~gk~~G-Av-Gt~~Ah~~a~p~~dw~~~~~~f~~~LGL~~~~~tT--QI~~rD~~ae~~~~ 238 (425)
T cd01598 166 VYRLERQYKQLKQIE---ILGKFNG-AV-GNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTT--QIEPHDYIAELFDA 238 (425)
T ss_pred HHHHHHHHHHHHHHH---HHHHCCC-CC-CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCC--CCCCCHHHHHHHHH
T ss_conf 999999999999743---0231057-66-63266676346764999999999972888898878--85661399999889
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCE-ECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-HHCC
Q ss_conf 68876648999999999841245615-404554565300444336013899876689997523358767404840-0001
Q gi|254780370|r 251 SAICAMHMSRLAEEIILWSTPQFNFV-RLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPL-AYSK 328 (473)
Q Consensus 251 l~~~~~~l~rla~Dl~~~ss~e~~~i-~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~-~~~r 328 (473)
++.+++.|.+||.|+..+.+. |++ +-....++|||+|||||||+.+|.+-|..+.+......+.. .+|. ...|
T Consensus 239 l~~i~~~l~~la~Di~~~~s~--~~~~e~~~~gqvGSStMPHK~NPI~~En~egnl~la~~l~~~~~~---~l~~sr~qR 313 (425)
T cd01598 239 LARINTILIDLCRDIWGYISL--GYFKQKVKKGEVGSSTMPHKVNPIDFENAEGNLGLSNALLNHLSA---KLPISRLQR 313 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHH---HCCHHHHHH
T ss_conf 999999999999999999850--052126789898048888552850156650568889999999887---333188772
Q ss_pred CHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 00100557--988999999865676523058666521012112378-443999999999853999799999999999999
Q gi|254780370|r 329 DMQEDKEP--VFDALETLQIIILAISAMIEDLTVNKDRLQEAATKS-HSTATDLADWLVSHAGLPFREAHYITGCTVSLA 405 (473)
Q Consensus 329 Dlq~~~~~--l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~-~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A 405 (473)
|+.++.-. +.-++..+..++.-+...+++++||+++|+++++.+ .++|+.+.-.| ++.|+| +||++|.++++-.
T Consensus 314 DLsdStv~Rnig~~~~~~~ia~~~~~~gL~~l~vn~~~m~~nL~~~~~vlaEai~~~l-r~~G~~--~aye~vk~ltrg~ 390 (425)
T cd01598 314 DLTDSTVLRNIGVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWEVLAEPIQTVM-RRYGIP--NPYEKLKDLTRGK 390 (425)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHCCCCHHHHHHHHHH-HHHCCC--CHHHHHHHHHCCC
T ss_conf 2424677777765377899999999977628557899999998718255999999999-984897--8899999985789
Q ss_pred HHCCCCHHHCCHHHHHHHHHCCC---HHHHHHCCHHHHH
Q ss_conf 98298968989999994001132---6899965999999
Q gi|254780370|r 406 EKNQCELAKLPLAMLQQISPVIT---SAVYDILKVESSI 441 (473)
Q Consensus 406 ~~~g~~l~el~~~~~~~~~~~~~---~di~~~ldp~~~v 441 (473)
...+..+ .++-.-.+..+ +++. .|+|.+++
T Consensus 391 ~~~~~~l-----~~~i~~l~~~~~~k~~l~-~ltP~~Y~ 423 (425)
T cd01598 391 RIDKETL-----KEFIDSLDIPEEAKAELL-ALTPANYI 423 (425)
T ss_pred CCCHHHH-----HHHHHHCCCCHHHHHHHH-CCCCCCCC
T ss_conf 8888999-----999983899999999998-08984667
No 38
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=0 Score=379.01 Aligned_cols=408 Identities=20% Similarity=0.284 Sum_probs=335.5
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 3332033238434699998425507-899999999999999999999879999899999999999999666459800156
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVSID-FDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR 88 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s~~-~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~ 88 (473)
.+++|| ..+...+..|.-+-+ +-.+++...-...+|-+....+.|.++++.++.|.++.++|...-.+++|+++.
T Consensus 17 ad~~wg----AQTqRs~~nF~ig~~~mp~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~Aadev~~Gk~d~~FPl~V 92 (462)
T COG0114 17 ADALWG----AQTQRSLENFPIGGEKMPREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAAADEVLAGKHDDHFPLDV 92 (462)
T ss_pred HHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEE
T ss_conf 788899----9999998637865332849999999999999999889827999899999999999997586667787688
Q ss_pred CC---C-----HHHHHHHHHHHHHHH-CCCC--CCC------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 64---6-----379999999973111-0234--201------44101123788799999999-99998677889999974
Q gi|254780370|r 89 DL---E-----DIHMNIEARLTSLIG-SIAG--KMH------TARSRNDQVALDLRLWIKEK-TLEITNDLKKLLTILLD 150 (473)
Q Consensus 89 ~~---e-----dvh~~iE~~l~~~~G-~~~~--~lH------~grSrND~~~t~~rl~lr~~-l~~l~~~l~~l~~~L~~ 150 (473)
-. + .+-.-|-+.-++.+| +.|. .+| ++.|+||.++|++++..-.+ ...|.+.|..|.++|.+
T Consensus 93 wQTGSGTqsNMN~NEVIAnrA~e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~ 172 (462)
T COG0114 93 WQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLAA 172 (462)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 75599863446289999999999837545778887998667765656762036999999999998757999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-------HHHH
Q ss_conf 477301452001665301133444567888888786206989998745423356532033566678998-------9631
Q gi|254780370|r 151 KAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH-------FTAK 223 (473)
Q Consensus 151 ~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~-------~~a~ 223 (473)
+|+++.+++.+||||+|+|.|.|||+.+++|+..|.+..+|+..+.+.+...++|++|+ ||+++.+++ .+++
T Consensus 173 Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAV-GTGlNa~p~f~ekva~~i~~ 251 (462)
T COG0114 173 KAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAV-GTGLNAHPEFGEKVAEELAE 251 (462)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCHHHHHHHHHHH
T ss_conf 99998645532731034457632443567899999999999999989999870577230-46768993478999999999
Q ss_pred HCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 03876-434785673027886424677768876648999999999841---24561540455456530044433601389
Q gi|254780370|r 224 ELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAE 299 (473)
Q Consensus 224 ~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E 299 (473)
+-|.. .+..|.+.+.++.|-++++.+++..+++.|-|||+||+++.| ..+|+|+|| +-..||||||.|.||+.+|
T Consensus 252 ~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lP-enePGSSIMPGKVNPtq~E 330 (462)
T COG0114 252 LTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELP-ENEPGSSIMPGKVNPTQCE 330 (462)
T ss_pred HHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCCCCHHHH
T ss_conf 758975048847887650068999867899999999999888878706887775421057-7899766789998942799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHH----HHHHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCC
Q ss_conf 987668999752335876740484000010010055----798899999986567652-305866652101211237844
Q gi|254780370|r 300 LVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKE----PVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHS 374 (473)
Q Consensus 300 ~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~----~l~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~ 374 (473)
.+...|.+++|+.+++...-.. | |-+|.--++ .+..+++.+.+++..+++ ++.++++|+++|++.++++.+
T Consensus 331 A~tmv~~QV~Gnd~ai~~ags~---G-nFELNv~~Pvi~~N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~Slm 406 (462)
T COG0114 331 ALTMVAAQVIGNDAAIAFAGSQ---G-NFELNVFKPVIAYNFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLM 406 (462)
T ss_pred HHHHHHHHHHCCHHHHHHHHCC---C-CEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHH
T ss_conf 9999999997555888875405---7-42200102899999999999999999999987661351388999999861705
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 3999999999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r 375 TATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 375 ~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
+.|.|+- .. .|+-..++.+.|.++|+++.|... +..-+.++++.+.+||+..+
T Consensus 407 LVTaLnp----~I------GYdkAa~IAK~A~keg~tlreaa~----~~G~lte~efd~~v~Pe~mv 459 (462)
T COG0114 407 LVTALNP----HI------GYDKAAKIAKKAHKEGTTLREAAL----ELGLLSEEEFDKLVDPEKMV 459 (462)
T ss_pred HHHHCCC----CC------CHHHHHHHHHHHHHCCCCHHHHHH----HCCCCCHHHHHHHCCHHHHC
T ss_conf 7886054----00------438999999999877982999998----83888999999863998826
No 39
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=100.00 E-value=0 Score=390.74 Aligned_cols=404 Identities=22% Similarity=0.246 Sum_probs=337.2
Q ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-HHHCCCEECCCCCCHHH---
Q ss_conf 46999984255---078999999999999999999998799998999999999999996-66459800156646379---
Q gi|254780370|r 22 PSWIMEKINVS---IDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRA-EIVDGSFVFSRDLEDIH--- 94 (473)
Q Consensus 22 ~~~~~~~~~~s---~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~-~~~~~~~~~~~~~edvh--- 94 (473)
+=+..+.|.-| +..-..+..--..+.+|-+.+..+.+.|+++-+.+|++|+++|.. .--.++|..|+-.+.-.
T Consensus 22 TLRA~ENF~Itn~ki~~~pefi~~~~~VKKAaaLAN~~l~~i~~~~~~AIv~AcDe~l~~GK~~DQFivD~~QGGAGTS~ 101 (469)
T TIGR00839 22 TLRASENFFITNDKISDVPEFIRGLAMVKKAAALANVELGLIPEKIAQAIVAACDEILETGKCHDQFIVDVIQGGAGTSV 101 (469)
T ss_pred HHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 43332030336861136078999999999999875588743088999999999999985687100222443338876542
Q ss_pred -HHH----HHHHHHHHH-CCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -999----999973111-0234201--------44101123788799999999999986778899999744773014520
Q gi|254780370|r 95 -MNI----EARLTSLIG-SIAGKMH--------TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIM 160 (473)
Q Consensus 95 -~~i----E~~l~~~~G-~~~~~lH--------~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m 160 (473)
||. -+.--|..| --|.|.| ...|+||..||++|+.+-..|..|.+.+..|++.+..+|.++.+++.
T Consensus 102 NMN~NEViaN~ALE~mGH~KGeY~~~~PndHVN~sQStNDayPta~~Ia~y~~L~kL~~~~~~l~~~F~~KA~EF~~viK 181 (469)
T TIGR00839 102 NMNTNEVIANLALEIMGHKKGEYQFLNPNDHVNRSQSTNDAYPTALRIAVYKSLEKLVDTMEDLRDAFKQKAKEFASVIK 181 (469)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 23067899998887625514662120886510224666664401789999999999999999999999888899888862
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-------HHHHCCCCC-CCC
Q ss_conf 016653011334445678888887862069899987454233565320335666789989-------631038764-347
Q gi|254780370|r 161 PGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHF-------TAKELGFRE-PTR 232 (473)
Q Consensus 161 pg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~-------~a~~LGf~~-~~~ 232 (473)
+||||+|+|+|+|+|+.|-+|+-.|.||.+++.+++..+...-||++|+ ||+++.+++| +|+.-||.- +..
T Consensus 182 MGRTqLQDAVPmtlGQEF~ay~~~l~~di~~~~~~~~~l~EvNlGaTAi-GTGlN~~~~Y~~lvvK~laevtG~p~V~A~ 260 (469)
T TIGR00839 182 MGRTQLQDAVPMTLGQEFEAYALLLERDIKNIKRTRQLLLEVNLGATAI-GTGLNTPPEYIKLVVKKLAEVTGLPLVPAE 260 (469)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-CCCCCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 1675454532355560489999999999999999987787763475102-157787711389998876411688642523
Q ss_pred CHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 85673027886424677768876648999999999841---245615404554565300444336013899876689997
Q gi|254780370|r 233 NSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRIN 309 (473)
Q Consensus 233 ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~ 309 (473)
|-++|+++-|-.++..++|..+++.|||+|+|||++|| ....+|.|| +.+.||||||.|.|||++|+|...|..|+
T Consensus 261 ~LieAT~~tgAYv~V~g~LKr~avklSKvcNDLRLlsSGPRAGL~EInLP-~~QpGSSIMPgKVNPV~pEvvNQvcF~VI 339 (469)
T TIGR00839 261 NLIEATQDTGAYVEVSGALKRIAVKLSKVCNDLRLLSSGPRAGLNEINLP-ELQPGSSIMPGKVNPVVPEVVNQVCFKVI 339 (469)
T ss_pred HHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHCEEE
T ss_conf 57775338996266418899999986457656776405775440005764-44778843787778721432520420100
Q ss_pred HHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 5233587674048400001001005579889999998656765-230586665210121123784439999999998539
Q gi|254780370|r 310 GALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAIS-AMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAG 388 (473)
Q Consensus 310 g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~~-~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~G 388 (473)
||-.++..+..+-.+.-|.==---...+|+|+..+..++.-++ .|++|+++|+++|...+.++.-..|.|--++ |
T Consensus 340 GND~tv~lA~EaGQLqLNVmEPVi~~~lf~S~~Il~na~~~l~~kC~~GItaN~~~c~~YV~nSiGivT~lNPhi----G 415 (469)
T TIGR00839 340 GNDTTVTLAAEAGQLQLNVMEPVIGQALFESISILTNAIENLTDKCVEGITANEKICEDYVFNSIGIVTALNPHI----G 415 (469)
T ss_pred CCCHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHCCCCEECCCCCC----C
T ss_conf 562588886113510120000689999999999998999988864203106768987401001110201014201----4
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 99799999999999999982989689899999940011326899965999999
Q gi|254780370|r 389 LPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 389 ipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
||-...+.+.|...|++.+|+.++- .-+.++++-++|+|++.+
T Consensus 416 ------y~~~~~iak~a~~tg~svrd~~Le~----~~LTee~LDdIl~~~nl~ 458 (469)
T TIGR00839 416 ------YENGALIAKEAAKTGKSVRDVVLEK----GLLTEEELDDILSPENLL 458 (469)
T ss_pred ------CCHHHHHHHHHHHCCCCHHHHHHCC----CCCCHHHHHCCCCHHHHC
T ss_conf ------2237799999974388330232224----556755410103826512
No 40
>TIGR00979 fumC_II fumarate hydratase, class II; InterPro: IPR005677 Fumarase C catalyzes the stereospecific interconversion of fumarate to L-malate as part of the metabolic citric acid or Kreb's cycle. The recent three-dimensional structure of fumarase C from Escherichia coli has identified a binding site for anions which is generated by side chains from three of the four subunits within the tetramer. These same side chains are found in the three most highly conserved regions within the class II fumarate hydratase family. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences.; GO: 0004333 fumarate hydratase activity, 0006106 fumarate metabolic process, 0045239 tricarboxylic acid cycle enzyme complex.
Probab=100.00 E-value=0 Score=385.74 Aligned_cols=409 Identities=21% Similarity=0.277 Sum_probs=339.0
Q ss_pred HHHHHCCCCCCCCHHHHHHHHCCC-HH-HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 233320332384346999984255-07-8999999999999999999998799998999999999999996664598001
Q gi|254780370|r 9 EVNQMWGGRFSSSPSWIMEKINVS-ID-FDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF 86 (473)
Q Consensus 9 ~~~~lW~grf~~~~~~~~~~~~~s-~~-~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~ 86 (473)
+-+|+|| +.+.+....|.-+ -+ -=.+|++.-....++-|....+.|.++.+.++.|.+|.++|.+.-.++.||+
T Consensus 14 ~adkyWG----AQT~RS~~nF~iG~~e~MP~~lI~Afa~lKk~aA~~N~~LG~L~~~k~~~I~~A~DeiL~G~~~d~FPL 89 (459)
T TIGR00979 14 PADKYWG----AQTQRSLENFKIGGKEKMPKELIRAFAILKKAAAIVNEDLGKLDAEKADAIAAAADEILAGKFDDHFPL 89 (459)
T ss_pred CHHHHHH----HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 2112323----666898872566888778788999999999999999686279988899999998769873874477985
Q ss_pred CCCC---C-----HHHHHHHHHHHHHHH-CCCCC--CC------CCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 5664---6-----379999999973111-02342--01------441011237887999999999-99986778899999
Q gi|254780370|r 87 SRDL---E-----DIHMNIEARLTSLIG-SIAGK--MH------TARSRNDQVALDLRLWIKEKT-LEITNDLKKLLTIL 148 (473)
Q Consensus 87 ~~~~---e-----dvh~~iE~~l~~~~G-~~~~~--lH------~grSrND~~~t~~rl~lr~~l-~~l~~~l~~l~~~L 148 (473)
..=. + .+-.-|-+.-++.+| ..|.+ || .+.|+||..||||++..-..+ ..|++.|..|.++|
T Consensus 90 ~vWQTGSGTQsNMN~NEViANrA~~~~gG~~G~k~~iHPNDhVNkSQSSNDtFPTAMHIAAv~~~~~~LIP~L~~L~~~l 169 (459)
T TIGR00979 90 VVWQTGSGTQSNMNVNEVIANRAIELLGGKLGSKKPIHPNDHVNKSQSSNDTFPTAMHIAAVLAIKEQLIPALENLKKTL 169 (459)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 37867877410022589999999998477667888789876568887788876678999999999875316799999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH-------H
Q ss_conf 744773014520016653011334445678888887862069899987454233565320335666789989-------6
Q gi|254780370|r 149 LDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHF-------T 221 (473)
Q Consensus 149 ~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr~~-------~ 221 (473)
.+|+++|.+.|.+||||+|+|.|.|+|+.+++|+..|.+.++++.++++.+...-+|++|+ ||+++..+++ +
T Consensus 170 ~~Ks~~F~~ivKIGRTHLqDAtPLTLGQEfSGY~~qL~~~l~~i~~sL~~l~~LA~GGTAV-GTGLN~~~~f~~Kv~~~~ 248 (459)
T TIGR00979 170 DEKSKEFADIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIEESLPHLYELALGGTAV-GTGLNTHPGFDEKVAEEI 248 (459)
T ss_pred HHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE-ECCCCCCHHHHHHHHHHH
T ss_conf 9999986087200564413244540024589999999999999999999999973577323-156688666788999999
Q ss_pred HHHCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCEECCCCCCCCCCCCCCCCCCHH
Q ss_conf 3103876-434785673027886424677768876648999999999841---245615404554565300444336013
Q gi|254780370|r 222 AKELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST---PQFNFVRLSDAFSTGSSIMPQKRNPDG 297 (473)
Q Consensus 222 a~~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss---~e~~~i~l~~~~~~GSSiMPqKrNP~~ 297 (473)
+++-|.. .+..|-+.|-++-|-++++.++|..+|..|-|||+||+++.| -.+|++-|||-= .||||||.|+||--
T Consensus 249 ~~~T~~~F~~ApNKF~ALa~HDAiv~ahGaL~~LA~sL~KIAnD~R~LgSGPRCGlGEl~~PENE-PGSSIMPGKVNPTQ 327 (459)
T TIGR00979 249 AKFTGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGELFLPENE-PGSSIMPGKVNPTQ 327 (459)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCH
T ss_conf 99737899899616778644589998647899999988779877878507886420025677787-57876978987104
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHH----HHHHHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCC
Q ss_conf 8998766899975233587674048400001001005579----8899999986567652-3058666521012112378
Q gi|254780370|r 298 AELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPV----FDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS 372 (473)
Q Consensus 298 ~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l----~~ai~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~ 372 (473)
+|.+...|.+|+||-+++...-.. | |-+|.-=|+.+ ..|++.+.+++.-+.. ++.||++|++|+.+.++++
T Consensus 328 ~EalTMVC~QVmGNd~tI~~agS~---G-nFELNVFkPViIyNfLqS~~LLsDa~~SF~~hcv~Gi~pN~~ri~~~l~~S 403 (459)
T TIGR00979 328 CEALTMVCVQVMGNDATIGFAGSQ---G-NFELNVFKPVIIYNFLQSVRLLSDAMESFREHCVVGIEPNKERIQQLLENS 403 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC---C-CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 358899888773002454533204---6-531234525899879989999998999888640124502458999997521
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 443999999999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r 373 HSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 373 ~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
.++.|.|+ .+-| |+-.+++.+.|.++|.+|.|-.++ ..-+.++|+-+.+-||..|
T Consensus 404 LMLVTALN----PhiG------Yd~AakiAK~Ahk~GitLKeaAl~----Lg~Lse~eFD~~V~PE~Mv 458 (459)
T TIGR00979 404 LMLVTALN----PHIG------YDNAAKIAKKAHKEGITLKEAALE----LGLLSEEEFDKWVVPEKMV 458 (459)
T ss_pred HHHHHHHC----CCCC------HHHHHHHHHHHHHCCCCHHHHHHH----CCCCCHHHCCCCCCCCCCC
T ss_conf 13345423----5457------478999999997439777899974----4897868827827986267
No 41
>cd01594 Lyase_I_like Lyase class I_like. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respectively.
Probab=100.00 E-value=0 Score=322.40 Aligned_cols=222 Identities=36% Similarity=0.467 Sum_probs=208.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHHC-CCCCC-----CC
Q ss_conf 9999999999999998799998999999999999996664598001566463799999999731110-23420-----14
Q gi|254780370|r 41 EQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGS-IAGKM-----HT 114 (473)
Q Consensus 41 ~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~~~edvh~~iE~~l~~~~G~-~~~~l-----H~ 114 (473)
++++.+.+||+.++ +|..|++++|+ .+++. |+
T Consensus 2 ra~~~v~~a~~~~~------------------------------------------i~~~L~~~~~~~~~~~~~~~~~~~ 39 (231)
T cd01594 2 RADLLVELAAALAL------------------------------------------VEEVLAGRAGELAGGLHGSALVHK 39 (231)
T ss_pred CHHHHHHHHHHHHH------------------------------------------HHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 24789879999999------------------------------------------999999999998678898777788
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 41011237887999999999999867788999997447730145200166530113344456788888878620698999
Q gi|254780370|r 115 ARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFD 194 (473)
Q Consensus 115 grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~ 194 (473)
||||||+++|++++++|+++..+.+.+..+..++..++++|++++||||||+|+|+|+|||||+.+|.+.+.|+.+||.+
T Consensus 40 ~~s~~d~~~t~~~~~~~~~l~~~~~~l~~~~~~l~~~ae~~~~~~~~~~th~q~A~p~t~g~~l~~~~~~l~~~~~~l~~ 119 (231)
T cd01594 40 GRSSNDIGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEE 119 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98811399999999999999999999999999999999981798633644676773120999999999999999999998
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 87454233565320335666789989631038764347856730278864246777688766489999999998412456
Q gi|254780370|r 195 SIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFN 274 (473)
Q Consensus 195 ~~~~~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~~ 274 (473)
+ +++++.+.++.++.+|+|+|+|+++|++.|++
T Consensus 120 ~-----------------------------------------------~~a~~~~~l~~~~~~l~~ia~d~~~~~~~~~~ 152 (231)
T cd01594 120 A-----------------------------------------------AVAEALDALALAAAHLSKIAEDLRLLLSGEFG 152 (231)
T ss_pred H-----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 5-----------------------------------------------89999999999999899999999998576755
Q ss_pred CEECCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1540455-4565300444336013899876689997523358767404840000100100557988999999865676
Q gi|254780370|r 275 FVRLSDA-FSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAI 351 (473)
Q Consensus 275 ~i~l~~~-~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~ai~~~~~~L~l~ 351 (473)
++.+|+. .++|||+||||+||+.+|++++++..+.|...+++.+.++.|++|+.|.+..+..+++++..+..++..+
T Consensus 153 ~~~~~~~~~~~gSS~mp~K~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~~~ 230 (231)
T cd01594 153 ELGEPFLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDALRLL 230 (231)
T ss_pred CEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 431355667886667898879669999999999998239999999845714776558978998998999999999975
No 42
>KOG2700 consensus
Probab=100.00 E-value=5.6e-44 Score=308.82 Aligned_cols=408 Identities=20% Similarity=0.157 Sum_probs=320.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEECCC----CC-CHHHHHHHHHHHHHHH
Q ss_conf 507899999999999999999999879999899999999999999666459800156----64-6379999999973111
Q gi|254780370|r 32 SIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR----DL-EDIHMNIEARLTSLIG 106 (473)
Q Consensus 32 s~~~D~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~~~----~~-edvh~~iE~~l~~~~G 106 (473)
|.....+.|++ ++.+.|-+..-...+.||++.+..+.... ++..-.|.... .+ .|| |+..+.+.+.|.
T Consensus 25 s~~~~~~twr~-lw~~lA~ae~~lgL~~itk~ai~e~~s~~-----~~e~~d~~~l~~ee~r~~hdV-mahvh~~~~~cp 97 (481)
T KOG2700 25 SDRNKFSTWRR-LWLWLAEAEKELGLTTITKEAIEEMKSSR-----DIENIDFTALSPEEGRYRHDV-MAHVHSFGELCP 97 (481)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHC-----CCCCCCHHHCCHHHHHHCCCH-HHHHHHHHHHCC
T ss_conf 66654312667-78866202313785213499999988521-----552542333384541304438-999999976363
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02342014410112378879999999999998677889999974477301452001665301133444567888888786
Q gi|254780370|r 107 SIAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFG 186 (473)
Q Consensus 107 ~~~~~lH~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~ 186 (473)
-.+|.+|+|.++.++.+.+....+|++...+.+.|...++-+...+.+|++++|.|+||+|||||+|||....-|..++.
T Consensus 98 ~aagiihlgatsc~vtdnadli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~~~qel~ 177 (481)
T KOG2700 98 IAAGIIHLGATSCFVTDNADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELL 177 (481)
T ss_pred HHCCEEEEEEEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 01054774202366157842013041799999999999999999998711340014136754015579999999899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC--CCC----CC-H------HHHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHH
Q ss_conf 20698999874542335653203356--667----89-9------89631038764347856730278864246777688
Q gi|254780370|r 187 RDISRFFDSIERLDECPLGAAALAGT--SFP----ID-R------HFTAKELGFREPTRNSIDSVSDRDFILECLSHSAI 253 (473)
Q Consensus 187 rd~~rL~~~~~~~~~~pLG~~A~~GT--~~~----id-r------~~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~ 253 (473)
++++++..+...+...-++++- || +|. -| - +.+++++||..+..-+ ..+.+|+...+....++.
T Consensus 178 ~~l~~f~~~~~~~~~~~~kga~--gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~ 254 (481)
T KOG2700 178 RDLERFHRARTDVRFRGLKGAT--GTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLAS 254 (481)
T ss_pred HHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHH
T ss_conf 9999999863120015665213--0188888863351888998999999981888655445-886783157899999998
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCEECC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHH
Q ss_conf 76648999999999841245615404-55456530044433601389987668999752335876740484000010010
Q gi|254780370|r 254 CAMHMSRLAEEIILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQE 332 (473)
Q Consensus 254 ~~~~l~rla~Dl~~~ss~e~~~i~l~-~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~ 332 (473)
+..+..|+|.|++++.. |++++-| ++.+.|||.||+||||+.+|.+.+.+..+....++.+.+ +..-|++|++..
T Consensus 255 lgat~~k~~Tdirll~~--~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~--~~~qw~Ertl~d 330 (481)
T KOG2700 255 LGATAHKYATDIRLLAK--FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNT--ASVQWHERTLDD 330 (481)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCC
T ss_conf 88999999999999999--98752550015555556887778712678758999987777777666--777776503453
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCC--CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH--
Q ss_conf 0---5579889999998656765230586665210121123--78443999999999853999799999999999999--
Q gi|254780370|r 333 D---KEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAAT--KSHSTATDLADWLVSHAGLPFREAHYITGCTVSLA-- 405 (473)
Q Consensus 333 ~---~~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~--~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A-- 405 (473)
+ +-.++++|......|.....++.|+.|.+.+|.+... .+++....+...|+ ++|.++.+||+.|+++...+
T Consensus 331 Sa~~rivlP~~Fl~ad~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~-~~g~srq~ahe~I~~L~~~a~~ 409 (481)
T KOG2700 331 SANRRIVLPDAFLTADGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALV-KAGLSRQEAHEGIRKLSHQAAQ 409 (481)
T ss_pred CCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHH
T ss_conf 336533465888877889998898984100152788888876311899999999988-7001299999999999998888
Q ss_pred --HHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf --98298968989999994001132689996599999962148999998999999999
Q gi|254780370|r 406 --EKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTY 461 (473)
Q Consensus 406 --~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~ 461 (473)
.++|+++..+-...-......+-+++-..|||.++. |-+++++.+.+.+
T Consensus 410 ~v~~e~g~~~~ie~~k~~~~~~~v~ee~~~ll~p~~f~-------gra~dQie~~v~~ 460 (481)
T KOG2700 410 VVKQEGGDNDLIERAKEDPTFKPVKEELDSLLDPLNFT-------GRAVDQIEKFVPK 460 (481)
T ss_pred HHHHHCCCCHHHHHHCCCCCCCCHHHHHHHHCCCHHCC-------CCCHHHHHHHHHH
T ss_conf 99986488178998302423462489998641602045-------2108999987311
No 43
>KOG1317 consensus
Probab=100.00 E-value=3.8e-40 Score=283.63 Aligned_cols=407 Identities=18% Similarity=0.265 Sum_probs=309.7
Q ss_pred HHHHCCCCCCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEC
Q ss_conf 333203323843469999842550789---99999999999999999998799998999999999999996664598001
Q gi|254780370|r 10 VNQMWGGRFSSSPSWIMEKINVSIDFD---KKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF 86 (473)
Q Consensus 10 ~~~lW~grf~~~~~~~~~~~~~s~~~D---~~l~~~di~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~~~ 86 (473)
++|+||. .+......|.-.=... ..++...=.-.+|.+....+-| +.+.-+++|.+|.+++....-.+.|++
T Consensus 42 ~DkyyGA----QT~Rs~~NF~IGg~~ERMP~pii~AfGiLKkaaA~vN~~~G-LDpkis~Ai~~AadeV~~GKL~dhFPL 116 (487)
T KOG1317 42 ADKYYGA----QTQRSLQNFKIGGERERMPEPIIQAFGILKKAAAEVNQEYG-LDPKISKAISQAADEVASGKLNDHFPL 116 (487)
T ss_pred CHHHHHH----HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 0433307----88877635645880102766899998899999998757618-885889999998888854763356754
Q ss_pred CC---CCC-----HHHHHHHHHHHHHHH-CCCC-CCC------CCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 56---646-----379999999973111-0234-201------44101123788799999999-9999867788999997
Q gi|254780370|r 87 SR---DLE-----DIHMNIEARLTSLIG-SIAG-KMH------TARSRNDQVALDLRLWIKEK-TLEITNDLKKLLTILL 149 (473)
Q Consensus 87 ~~---~~e-----dvh~~iE~~l~~~~G-~~~~-~lH------~grSrND~~~t~~rl~lr~~-l~~l~~~l~~l~~~L~ 149 (473)
.. +-+ .....|-+.-+|.+| +.|. ++| ...|+||-++|++.+..-.. -.++.+.|..|..+|.
T Consensus 117 vvwQTGSGTQsNMN~NEVIsNrAieilGg~~GsK~VHPNdHvN~SQSSNDTFPtamHIa~~~ei~~~L~P~l~~L~~aL~ 196 (487)
T KOG1317 117 VVWQTGSGTQSNMNANEVISNRAIEILGGKLGSKKVHPNDHVNKSQSSNDTFPTAMHIAAATEINSRLIPALTNLRDALE 196 (487)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68863787424672777776778998645446663587542341114677640478999999888777588898999988
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH-------HHHH
Q ss_conf 447730145200166530113344456788888878620698999874542335653203356667899-------8963
Q gi|254780370|r 150 DKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDR-------HFTA 222 (473)
Q Consensus 150 ~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~~A~~GT~~~idr-------~~~a 222 (473)
.++.+++|.+..||||.|+|.|.|+|+.|++|...+.-.++|+..+.+|+.+..+|+.|+ ||+++..+ ++++
T Consensus 197 aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAV-GTGLNTr~GFaeKia~~va 275 (487)
T KOG1317 197 AKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAV-GTGLNTRKGFAEKIAARVA 275 (487)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHH
T ss_conf 536888999985221245555540100224699999989999986415899996378510-2565566457899999999
Q ss_pred HHCCCC-CCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCEECCCCCCCCCCCCCCCCCCHHH
Q ss_conf 103876-4347856730278864246777688766489999999998412---456154045545653004443360138
Q gi|254780370|r 223 KELGFR-EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTP---QFNFVRLSDAFSTGSSIMPQKRNPDGA 298 (473)
Q Consensus 223 ~~LGf~-~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl~~~ss~---e~~~i~l~~~~~~GSSiMPqKrNP~~~ 298 (473)
++-|+. -..+|-+.+.+.+|.++|..+++..+++.|-||++|++++.|. .+|++.|||. ..||||||.|.||..+
T Consensus 276 ~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LPEN-EPGSSIMPGKVNPTQc 354 (487)
T KOG1317 276 ELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPEN-EPGSSIMPGKVNPTQC 354 (487)
T ss_pred HHHCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCHHH
T ss_conf 873897410661888776545678741307789999999852112105788777653136789-9986668888791788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHH----HHHHHHHHHHHHHHHHH-HHHCCCEECCCHHHHCCCCCC
Q ss_conf 9987668999752335876740484000010010055----79889999998656765-230586665210121123784
Q gi|254780370|r 299 ELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKE----PVFDALETLQIIILAIS-AMIEDLTVNKDRLQEAATKSH 373 (473)
Q Consensus 299 E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~----~l~~ai~~~~~~L~l~~-~li~~l~vn~erm~~~~~~~~ 373 (473)
|.+...|.+++|+.+.+...-.|-.+ ++.--|+ .+..++..+.++.--++ .++.+++.|++|+.+.+..+.
T Consensus 355 EamTmvcaQVMGN~vAvtvgGsnGhF----ELNVFKP~i~~nvL~SirLl~D~~~sF~~nCV~Gi~aN~eri~kl~~eSL 430 (487)
T KOG1317 355 EAMTMVCAQVMGNHVAVTVGGSNGHF----ELNVFKPLIASNVLHSIRLLADASVSFTKNCVVGIEANKERIAKLLNESL 430 (487)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCEE----EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999984573589963667626----77330489999999888876401312214245223278788999987767
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 43999999999853999799999999999999982989689899999940011326899965999999
Q gi|254780370|r 374 STATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 374 ~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
++.|.|. .+.| |+-..++.+.|.++|.+|.+-.+ +.....++++.+...|+..+
T Consensus 431 MLVTaLN----PhIG------YD~aa~iAK~AHKng~TLk~~Al----~lGvltee~F~ewV~Pe~Ml 484 (487)
T KOG1317 431 MLVTALN----PHIG------YDNAAKIAKTAHKNGTTLKEEAL----KLGVLTEEQFDEWVVPEKML 484 (487)
T ss_pred HHHHCCC----CCCC------CCHHHHHHHHHHHCCCCHHHHHH----HHCCCCHHHHHHHHCHHHCC
T ss_conf 6543048----6547------40688999976526876899898----85547599887650877404
No 44
>pfam10397 ADSL_C Adenylosuccinate lyase C-terminus. This is the C-terminal seven alpha helices of the structure whose full length represents the enzyme adenylosuccinate lyase. This sequence lies C-terminal to the conserved motif necessary for beta-elimination reactions, Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide, the eighth step of the de novo pathway, and the formation of adenosine monophosphate (AMP) from adenylosuccinate, the second step in the conversion of inosine monophosphate into AMP.
Probab=98.34 E-value=2e-06 Score=61.85 Aligned_cols=80 Identities=14% Similarity=0.016 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCC
Q ss_conf 78443999999999853999799999999999999982989689899999940011326899965999999621489999
Q gi|254780370|r 371 KSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGT 450 (473)
Q Consensus 371 ~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGt 450 (473)
.|++.+..++..|+ ++|++..+||++|.++++.|.++|.++.|+..++.........+++.+++||++++ |-
T Consensus 1 ~Gli~Se~vml~L~-~~glgR~~Ah~lVq~~a~~a~~~~~~l~e~l~~d~~i~~~l~~~el~~l~dp~~yl-------g~ 72 (81)
T pfam10397 1 GGLIFSERVLLALA-EKGLGREEAYELVQRAAMKAWEEGRDLREVLLADPEVAAYLSEEELDALFDPAYYL-------GH 72 (81)
T ss_pred CCHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHCCHHHHHHHCCHHHHH-------HH
T ss_conf 95388999999998-80898899999999999999883986999987098999774699999873999999-------72
Q ss_pred CHHHHHHH
Q ss_conf 98999999
Q gi|254780370|r 451 CAAEVLKQ 458 (473)
Q Consensus 451 ap~~V~~~ 458 (473)
+...|++.
T Consensus 73 ~~~i~~rv 80 (81)
T pfam10397 73 ADEIVDRV 80 (81)
T ss_pred HHHHHHHH
T ss_conf 89999875
No 45
>pfam08328 ASL_C Adenylosuccinate lyase C-terminal. This domain is found at the C-terminus of adenylosuccinate lyase(ASL; PurB in E. coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain pfam00206. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate.
Probab=95.90 E-value=0.019 Score=35.63 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=67.0
Q ss_pred CCCHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 01001005--5798899999986567652305866652101211237844399999999985399979999999999999
Q gi|254780370|r 327 SKDMQEDK--EPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSL 404 (473)
Q Consensus 327 ~rDlq~~~--~~l~~ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~ 404 (473)
.||+..+. ..+--+|.....++.-+..-+..+.||+++|.+.+.++|..-+|..-...++.|+| +||+.+.++.+
T Consensus 4 QRDLsDSTvlRNiGvafg~s~ia~~s~~kGL~ki~~N~~~i~~dL~~~weVLaEaiQtiLR~~g~~--~~YE~lK~lTR- 80 (115)
T pfam08328 4 QRDLTDSTVLRNLGVAFGHSLIAYDSLLKGLGKLEVNEARLAADLDANWEVLAEPIQTVMRRYGIP--NPYEKLKELTR- 80 (115)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHC-
T ss_conf 544405589985008999999999999989875015799999999977899999999999981999--89999999866-
Q ss_pred HHHCCCCHHHCCHHHHHHHHHCC--CHHHH---HHCCHHHHH
Q ss_conf 99829896898999999400113--26899---965999999
Q gi|254780370|r 405 AEKNQCELAKLPLAMLQQISPVI--TSAVY---DILKVESSI 441 (473)
Q Consensus 405 A~~~g~~l~el~~~~~~~~~~~~--~~di~---~~ldp~~~v 441 (473)
|+. ++.+++..|-..+ .++.+ ..|.|.++|
T Consensus 81 ----Gk~---i~~~~~~~fI~~L~i~~~~k~~Ll~LtP~~Yi 115 (115)
T pfam08328 81 ----GKR---ITKEDLREFIDGLDIPEEAKARLLALTPATYI 115 (115)
T ss_pred ----CCC---CCHHHHHHHHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf ----898---99999999999579999999999828703209
No 46
>KOG2700 consensus
Probab=94.66 E-value=0.37 Score=27.22 Aligned_cols=37 Identities=19% Similarity=-0.116 Sum_probs=25.4
Q ss_pred HHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9997447-7301452001665301133444567888888
Q gi|254780370|r 146 TILLDKA-EEHHNTIMPGFTHLQTAQPVTFGHHCMAYVE 183 (473)
Q Consensus 146 ~~L~~~A-~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~ 183 (473)
+++.+++ ++..=++|.-+| +|++-|.+.+-.+..++.
T Consensus 217 ~~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~ 254 (481)
T KOG2700 217 EKLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLAS 254 (481)
T ss_pred HHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHH
T ss_conf 98999999981888655445-886783157899999998
No 47
>PRK07680 late competence protein ComER; Validated
Probab=85.83 E-value=2.7 Score=21.51 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=51.5
Q ss_pred CCCEECCCHHHHCC---CCC--C--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHCCCCHHHCCHHHHHHHH
Q ss_conf 58666521012112---378--4--439999999998539997999999999999----999829896898999999400
Q gi|254780370|r 356 EDLTVNKDRLQEAA---TKS--H--STATDLADWLVSHAGLPFREAHYITGCTVS----LAEKNQCELAKLPLAMLQQIS 424 (473)
Q Consensus 356 ~~l~vn~erm~~~~---~~~--~--~~AT~lAd~Lv~~~GipFReAH~iVg~lV~----~A~~~g~~l~el~~~~~~~~~ 424 (473)
...+++++.+.... ..| | ..+..+++.-+++.|+|..+|..++...+. ...+.+.++.+
T Consensus 153 ~~~~i~E~~~d~~talsGSGPAy~~~~~eal~~a~v~~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~~~~---------- 222 (273)
T PRK07680 153 TPLVIEEDITRVASDIVSCGPAFFSYLLQRFINAAVDKTNITKEEATTLVTEMVVGLGKLLEKGLYTLPT---------- 222 (273)
T ss_pred EEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHH----------
T ss_conf 7999857887678886168489999999999999999859999999999999999999999827989899----------
Q ss_pred HCCCHHHHHHCCHHHHHHHCCCCCCCC---------------HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 113268999659999996214899999---------------8999999999999999856129
Q gi|254780370|r 425 PVITSAVYDILKVESSISSRKSFGGTC---------------AAEVLKQVTYWRNRIQNIPKKI 473 (473)
Q Consensus 425 ~~~~~di~~~ldp~~~v~~R~s~GGta---------------p~~V~~~i~~~r~~L~~~~~~l 473 (473)
-+++=+|+|||- -+.+++..++++++++++.+|+
T Consensus 223 ---------------L~~~V~SPgGtT~~gl~~Le~~~~~~f~~a~~~a~~r~~e~~~~~~~~~ 271 (273)
T PRK07680 223 ---------------LQEKVCVKGGVTGEGIRVLEEHVGDMFHKLFERTHEKFDEDLEKVKQQF 271 (273)
T ss_pred ---------------HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------9980789972599999999972599999999999999999999999985
No 48
>pfam10415 FumaraseC_C Fumarase C C-terminus. Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Kreb's cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit. FumaraseC_C does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle.
Probab=82.26 E-value=2 Score=22.43 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 999999999999982989689899999940011326899965999999
Q gi|254780370|r 394 AHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441 (473)
Q Consensus 394 AH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v 441 (473)
.|+...++++.|.++|+++.|+..+ ..-..++++.++|||++.+
T Consensus 10 GY~~aa~IAk~A~~~g~sv~e~v~e----~glls~~e~d~ll~p~~m~ 53 (55)
T pfam10415 10 GYDKAAKIAKEALKTGRTLREVALE----LGLLTEEELDEILDPENMT 53 (55)
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHH----CCCCCHHHHHHHCCHHHCC
T ss_conf 4399999999999929989999999----3999999999877998828
No 49
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=78.74 E-value=4.9 Score=19.78 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=29.0
Q ss_pred CCEECCCHHHH--CC-CCC--C--CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 86665210121--12-378--4--439999999998539997999999999999
Q gi|254780370|r 357 DLTVNKDRLQE--AA-TKS--H--STATDLADWLVSHAGLPFREAHYITGCTVS 403 (473)
Q Consensus 357 ~l~vn~erm~~--~~-~~~--~--~~AT~lAd~Lv~~~GipFReAH~iVg~lV~ 403 (473)
...++++.|.. .+ ..| | ..+..+++.-|+..|+|.-+|++++...+.
T Consensus 155 v~~v~E~~~d~~TalsGSGPAyv~~~~eal~~a~v~~~gl~~~~A~~l~~~t~~ 208 (275)
T PRK06928 155 VMTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALA 208 (275)
T ss_pred EEEECHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 133058998899988363999999999999999999679999999999999999
No 50
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=68.85 E-value=8.6 Score=18.21 Aligned_cols=97 Identities=24% Similarity=0.195 Sum_probs=54.1
Q ss_pred HHHHHHCCCEECCCHHHHC--C-CCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHCCCCHHHCCHH
Q ss_conf 7652305866652101211--2-378----4439999999998539997999999999999----999829896898999
Q gi|254780370|r 350 AISAMIEDLTVNKDRLQEA--A-TKS----HSTATDLADWLVSHAGLPFREAHYITGCTVS----LAEKNQCELAKLPLA 418 (473)
Q Consensus 350 l~~~li~~l~vn~erm~~~--~-~~~----~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~----~A~~~g~~l~el~~~ 418 (473)
++..+=...++.++.|... + ..+ |.....+++.-|+ .|+|..+|.+++...+. ...+.+..
T Consensus 147 l~~~~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~-~Gl~~~~A~~l~~~t~~Gaakll~e~~~~------- 218 (266)
T COG0345 147 LLSAVGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADAGVR-LGLPREEARELAAQTVAGAAKLLLESGEH------- 218 (266)
T ss_pred HHHHCCCEEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHCCCC-------
T ss_conf 9982598699646771499998448689999999999999998-59999999999999999999999866999-------
Q ss_pred HHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999400113268999659999996214899999------------899999999999999985612
Q gi|254780370|r 419 MLQQISPVITSAVYDILKVESSISSRKSFGGTC------------AAEVLKQVTYWRNRIQNIPKK 472 (473)
Q Consensus 419 ~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGta------------p~~V~~~i~~~r~~L~~~~~~ 472 (473)
|..--++=+|+|||. ...+.+.+.++.++.++++++
T Consensus 219 ------------------p~~Lr~~VtSPGGtTiagl~~le~~g~~~~v~~av~aa~~r~~el~~~ 266 (266)
T COG0345 219 ------------------PAELRDQVTSPGGTTIAGLRVLEEDGFRGAVIEAVEAAYKRSEELGKQ 266 (266)
T ss_pred ------------------HHHHHHHCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf ------------------799998575998408999999988073999999999999999986259
No 51
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=60.11 E-value=12 Score=17.15 Aligned_cols=72 Identities=26% Similarity=0.167 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH----HHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCC
Q ss_conf 4399999999985399979999999999999----998298968989999994001132689996599999962148999
Q gi|254780370|r 374 STATDLADWLVSHAGLPFREAHYITGCTVSL----AEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGG 449 (473)
Q Consensus 374 ~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~----A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GG 449 (473)
..+..+++..+ +.|+|..+|..++...+.= ..+.+. +|...+++=.|+||
T Consensus 179 ~~~eal~~a~v-~~Gl~~~~A~~l~~qt~~G~a~ll~~~~~-------------------------~p~~L~~~V~SpgG 232 (267)
T PRK11880 179 LFIEALADAGV-KLGLPRETARKLAAQTVLGAAKLLLESGE-------------------------HPAELRDNVTSPGG 232 (267)
T ss_pred HHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHCCCCCH
T ss_conf 99999999999-86997999999999999999999987299-------------------------99999983679965
Q ss_pred CC------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99------------89999999999999998561
Q gi|254780370|r 450 TC------------AAEVLKQVTYWRNRIQNIPK 471 (473)
Q Consensus 450 ta------------p~~V~~~i~~~r~~L~~~~~ 471 (473)
|. ...+.+.+..+.+|-+++.|
T Consensus 233 tT~~gl~~Le~~g~~~~i~~Ai~aa~~Rs~el~k 266 (267)
T PRK11880 233 TTIAALRVLEEGGFRAAVIEAVQAAAKRSKELGK 266 (267)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3999999999888499999999999999998767
No 52
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=59.09 E-value=13 Score=17.04 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 579889999998656
Q gi|254780370|r 335 EPVFDALETLQIIIL 349 (473)
Q Consensus 335 ~~l~~ai~~~~~~L~ 349 (473)
..-||.+..+..++.
T Consensus 190 ~A~wd~I~~vKq~v~ 204 (336)
T TIGR00737 190 EANWDIIARVKQAVR 204 (336)
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 760689999999971
No 53
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=54.60 E-value=15 Score=16.56 Aligned_cols=90 Identities=16% Similarity=0.128 Sum_probs=50.8
Q ss_pred CCEECCCHHHHCC---CCC----CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHCCCCHHHCCHHHHHHHHH
Q ss_conf 8666521012112---378----4439999999998539997999999999999----9998298968989999994001
Q gi|254780370|r 357 DLTVNKDRLQEAA---TKS----HSTATDLADWLVSHAGLPFREAHYITGCTVS----LAEKNQCELAKLPLAMLQQISP 425 (473)
Q Consensus 357 ~l~vn~erm~~~~---~~~----~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~----~A~~~g~~l~el~~~~~~~~~~ 425 (473)
...++++.|.... ..| |..+..+++..+ +.|+|.-+|..++...+. ...+.+..
T Consensus 157 ~~~~~E~~~d~~TalsGSgPAy~~~~~eal~~a~v-~~Gl~~~~A~~l~~~~~~G~~~ll~~~~~~-------------- 221 (272)
T PRK12491 157 TEVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAV-LGGMPRKQAYKFAAQAVLGSAKMVLETGIH-------------- 221 (272)
T ss_pred EEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCCC--------------
T ss_conf 99963531101457834759999999999999999-849899999999999999999999864999--------------
Q ss_pred CCCHHHHHHCCHHHHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 13268999659999996214899999------------899999999999999985612
Q gi|254780370|r 426 VITSAVYDILKVESSISSRKSFGGTC------------AAEVLKQVTYWRNRIQNIPKK 472 (473)
Q Consensus 426 ~~~~di~~~ldp~~~v~~R~s~GGta------------p~~V~~~i~~~r~~L~~~~~~ 472 (473)
|..-.++=+|+|||. ...+.+.++.+.+|-+++.++
T Consensus 222 -----------p~~L~~~V~SpgGtT~aGl~~Le~~g~~~~i~~Ai~aA~~Rs~El~~~ 269 (272)
T PRK12491 222 -----------PGELKDMVCSPGGTTIEAVATLEEKGLRTAIISAMKRCTQKSMEMSSL 269 (272)
T ss_pred -----------HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------999998278997879999999998882999999999999999998765
No 54
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase; InterPro: IPR010110 This entry represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.; GO: 0004764 shikimate 5-dehydrogenase activity, 0005737 cytoplasm.
Probab=52.95 E-value=4 Score=20.36 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CHHCCCHH
Q ss_conf 0455456530044433601389987668999752335876740484---00001001
Q gi|254780370|r 278 LSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLP---LAYSKDMQ 331 (473)
Q Consensus 278 l~~~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p---~~~~rDlq 331 (473)
..+.|.|-|-+||-|-|=..+--=-.-.+.++|..++++.+.++-. -|.|-|++
T Consensus 55 ~~~~fgGasVTiPlK~~i~~~~DE~td~A~liGsvNT~~rt~n~Gqy~~kgdNTD~~ 111 (291)
T TIGR01809 55 FGKEFGGASVTIPLKLDILRFLDELTDRASLIGSVNTVLRTQNKGQYKLKGDNTDWD 111 (291)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHHHHHHHHEEHHHHCEECCCCCEEEEECCCCCHH
T ss_conf 786521178863037899998754422121200111101225485267711478388
No 55
>TIGR01793 cit_synth_euk citrate (Si)-synthase, eukaryotic; InterPro: IPR010109 Citrate synthase 2.3.3.1 from EC is a member of a small family of enzymes that can directly form a carbon-carbon bond without the presence of metal ion cofactors. It catalyses the first reaction in the Krebs' cycle, namely the conversion of oxaloacetate and acetyl-coenzyme A into citrate and coenzyme A. This reaction is important for energy generation and for carbon assimilation. The reaction proceeds via a non-covalently bound citryl-coenzyme A intermediate in a 2-step process (aldol-Claisen condensation followed by the hydrolysis of citryl-CoA). Citrate synthase enzymes are found in two distinct structural types: type I enzymes (found in eukaryotes, Gram-positive bacteria and archaea) form homodimers and have shorter sequences than type II enzymes, which are found in Gram-negative bacteria and are hexameric in structure. In both types, the monomer is composed of two domains: a large alpha-helical domain consisting of two structural repeats, where the second repeat is interrupted by a small alpha-helical domain. The cleft between these domains forms the active site, where both citrate and acetyl-coenzyme A bind. The enzyme undergoes a conformational change upon binding of the oxaloacetate ligand, whereby the active site cleft closes over in order to form the acetyl-CoA binding site . The energy required for domain closure comes from the interaction of the enzyme with the substrate. Type II enzymes possess an extra N-terminal beta-sheet domain, and some type II enzymes are allosterically inhibited by NADH . This entry includes both mitochondrial and peroxisomal forms of citrate synthase. Peroxisomal forms of the enzyme, recognized by the C-terminal targeting motif SKL, act in the glyoxylate cycle. Eukaryotic homologs include a Tetrahymena thermophila citrate synthase that doubles as a filament protein, a putative citrate synthase from Plasmodium falciparum (no TCA cycle), and a methylcitrate synthase from Aspergillus nidulans (Emericella nidulans).; GO: 0004108 citrate (Si)-synthase activity, 0044262 cellular carbohydrate metabolic process.
Probab=52.50 E-value=9.5 Score=17.90 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHCCC------CCC-CCCCHH-----HHHHHCCC-CCC---------------------CCCHHHHCC
Q ss_conf 98745423356532033------566-678998-----96310387-643---------------------478567302
Q gi|254780370|r 194 DSIERLDECPLGAAALA------GTS-FPIDRH-----FTAKELGF-REP---------------------TRNSIDSVS 239 (473)
Q Consensus 194 ~~~~~~~~~pLG~~A~~------GT~-~~idr~-----~~a~~LGf-~~~---------------------~~ns~dav~ 239 (473)
|..+-+.+.|-=||-+| |.+ .+||.. =.|..||| |.| ..|+-+=|+
T Consensus 172 DS~dLiAkLPtvAA~IYRn~ykdG~~v~~id~~kDysaNfa~~LGyaD~p~f~ELMRLYltIHsDHEGGNVSAHT~HLVg 251 (430)
T TIGR01793 172 DSMDLIAKLPTVAAKIYRNLYKDGKAVASIDDKKDYSANFASMLGYADDPSFAELMRLYLTIHSDHEGGNVSAHTSHLVG 251 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCHHHHHHHHHHHEEEECCCCCCCCHHHHHHHH
T ss_conf 47999984369999999866128805773167654012167515756787589886623001201488861024578888
Q ss_pred C--CCCCHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCEECCCC-CCCCCCCCCCCCCCHHHHHHHH------HHHHH-
Q ss_conf 7--88642467776887664899999-999984124561540455-4565300444336013899876------68999-
Q gi|254780370|r 240 D--RDFILECLSHSAICAMHMSRLAE-EIILWSTPQFNFVRLSDA-FSTGSSIMPQKRNPDGAELVRA------KTGRI- 308 (473)
Q Consensus 240 s--Rd~~~e~~~~l~~~~~~l~rla~-Dl~~~ss~e~~~i~l~~~-~~~GSSiMPqKrNP~~~E~ir~------~a~~~- 308 (473)
| -|.++-|+++++.+|.-|--+|+ |+.+|-..=.+ ++.+. ++- |-++- +|++|
T Consensus 252 SALSdPyLSfaAalnGLAGPLHGLANQEVL~wl~~~v~--e~G~~n~t~--------------eqlKdy~WktLnsG~VV 315 (430)
T TIGR01793 252 SALSDPYLSFAAALNGLAGPLHGLANQEVLVWLKEVVK--EVGEDNLTE--------------EQLKDYVWKTLNSGKVV 315 (430)
T ss_pred HHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHCCCCCCH--------------HHHHHHHHHHHCCCCEE
T ss_conf 77316568999986311220113688999999998877--517887747--------------67899999760589542
Q ss_pred HHHHHHHHHHHHCCCCHHCCCHHHHHHHHH--HHHHHHHHHHHHHHHHH------CCCEECCCHHHHCCCCCCCHHHHHH
Q ss_conf 752335876740484000010010055798--89999998656765230------5866652101211237844399999
Q gi|254780370|r 309 NGALLSLLTIMKGLPLAYSKDMQEDKEPVF--DALETLQIIILAISAMI------EDLTVNKDRLQEAATKSHSTATDLA 380 (473)
Q Consensus 309 ~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~--~ai~~~~~~L~l~~~li------~~l~vn~erm~~~~~~~~~~AT~lA 380 (473)
.|.==+ .++++-==|.+--+..-.+++ +.|..+....++...++ ++=-+|-|.=---+-+.| -.||..
T Consensus 316 PGYGHa---VLRkTDPRY~cQREFALk~LPdDplFkLVS~lyki~PgiLtE~GK~KNPwPNVDaHSGVLLqyy-GlTE~~ 391 (430)
T TIGR01793 316 PGYGHA---VLRKTDPRYICQREFALKHLPDDPLFKLVSQLYKIVPGILTELGKVKNPWPNVDAHSGVLLQYY-GLTEAR 391 (430)
T ss_pred CCCCCC---CCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCHHHHHHHHC-CCCCCC
T ss_conf 576652---0268898843128888331789615688641010168500047875786778752011676402-400002
Q ss_pred HHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999853999799999999999
Q gi|254780370|r 381 DWLVSHAGLPFREAHYITGCTV 402 (473)
Q Consensus 381 d~Lv~~~GipFReAH~iVg~lV 402 (473)
+|=|- .|+++ |=-+...+|
T Consensus 392 yYTVL-FGVSR--AlG~lsQLi 410 (430)
T TIGR01793 392 YYTVL-FGVSR--ALGVLSQLI 410 (430)
T ss_pred CHHHH-HHHHH--HHHHHHHHH
T ss_conf 10343-34668--874436899
No 56
>KOG0993 consensus
Probab=48.37 E-value=18 Score=16.15 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCH
Q ss_conf 565300444336013899876689997523358767404840000100
Q gi|254780370|r 283 STGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDM 330 (473)
Q Consensus 283 ~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDl 330 (473)
+|.||.|||-|.-..+|--.-+ .+.|.....+-.+..-|.||--++
T Consensus 245 vga~s~mpq~rk~mtpeqeeta--sLlss~t~~~e~~y~~p~gy~lv~ 290 (542)
T KOG0993 245 VGADSVMPQERKAMTPEQEETA--SLLSSTTKSAEELYSEPIGYPLVL 290 (542)
T ss_pred CCCCCCCCHHHHCCCHHHHHHH--HHHHHCCCCHHHHCCCCCCCCCCH
T ss_conf 5644347143303782478899--997412335254227999987674
No 57
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=47.76 E-value=19 Score=15.87 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=13.4
Q ss_pred HHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 3058666521012112378443999999999853999
Q gi|254780370|r 354 MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLP 390 (473)
Q Consensus 354 li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~Gip 390 (473)
=++|+.++-.|-=+.... . ..+....+. +.|+|
T Consensus 361 ~vDG~v~H~NRSCk~~S~--~-~~e~R~~~e-k~GiP 393 (430)
T TIGR03191 361 NVDGCMLHLNRGCEGLSI--G-IMENRLAIA-KAGIP 393 (430)
T ss_pred CCCEEEEECCCCCCCCCC--C-CHHHHHHHH-HCCCC
T ss_conf 998799947889864321--0-589999998-75998
No 58
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=46.83 E-value=8.8 Score=18.13 Aligned_cols=43 Identities=19% Similarity=0.246 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1441011237887999999999999867788999997447730
Q gi|254780370|r 113 HTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEH 155 (473)
Q Consensus 113 H~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~ 155 (473)
++|+..+..-.+.......-.-..+..++..|...+...|.+.
T Consensus 378 ~~G~p~d~~~~~~~~~K~lv~~~~lage~~rLa~~l~~~a~~~ 420 (889)
T COG3280 378 FSGRPVDEYPALLYQAKLLVLVQNLAGELRRLARLLLRIASAD 420 (889)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6188355529999999999997551689999999999875543
No 59
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=44.81 E-value=22 Score=15.57 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=45.7
Q ss_pred CEECCCHHHH--CC-CCCC----CHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHCCCCHHHCCHHHHHHHHHC
Q ss_conf 6665210121--12-3784----439999999998539997999999999999----99982989689899999940011
Q gi|254780370|r 358 LTVNKDRLQE--AA-TKSH----STATDLADWLVSHAGLPFREAHYITGCTVS----LAEKNQCELAKLPLAMLQQISPV 426 (473)
Q Consensus 358 l~vn~erm~~--~~-~~~~----~~AT~lAd~Lv~~~GipFReAH~iVg~lV~----~A~~~g~~l~el~~~~~~~~~~~ 426 (473)
..++++-|.. .+ ..|. ..+..+++.-+ +.|+|..+|..++...+. ...+.+..
T Consensus 160 ~~v~E~~~d~~TalsGSgPAf~~~~~eal~~a~~-~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~--------------- 223 (279)
T PRK07679 160 SVVEEEDMHAVTALSGSGPAYIYYVVEAMEEAAK-KIGLKEDVAKSLILQTMIGAAEMLKASEKH--------------- 223 (279)
T ss_pred EEECHHHCCCHHHEECCHHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHCCCC---------------
T ss_conf 9954333032100016648999999999999999-839999999999999999999999846999---------------
Q ss_pred CCHHHHHHCCHHHHHHHCCCCCCCC------------HHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3268999659999996214899999------------899999999999999985612
Q gi|254780370|r 427 ITSAVYDILKVESSISSRKSFGGTC------------AAEVLKQVTYWRNRIQNIPKK 472 (473)
Q Consensus 427 ~~~di~~~ldp~~~v~~R~s~GGta------------p~~V~~~i~~~r~~L~~~~~~ 472 (473)
|....+.=+|+|||. ...+.+.+..+.+|-+++.|.
T Consensus 224 ----------p~~L~~~V~SpgGtT~~gl~~Le~~~~~~~i~~Av~aA~~Rs~el~k~ 271 (279)
T PRK07679 224 ----------PSILRKEITSPGGTTEAGIEVLQEHKFQQALISCITQATQRSHNLGKT 271 (279)
T ss_pred ----------HHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------999998468994659999999998881999999999999999999999
No 60
>pfam10372 YojJ Bacterial membrane-spanning protein N-terminus. YojJ is the N-terminus of a family of bacterial proteins some of which are associated with DUF147 pfam02457 towards the C-terminus. It is a putative membrane-spanning protein.
Probab=43.67 E-value=22 Score=15.46 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87999999999999867788999997447730145200166530113344456788888878
Q gi|254780370|r 124 LDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMF 185 (473)
Q Consensus 124 t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l 185 (473)
..++..++..+..+.+++..++.+|-+.-+=-.-.+=--+++++.+|-+.-.+||-+|.+++
T Consensus 9 ~~~K~~~k~~l~~I~~~l~~i~~tl~e~d~CiLc~le~i~~~~~~~qt~AsSyYLqsYLspf 70 (70)
T pfam10372 9 KEFKIQTKQYLEIIEKDLSIILQTLDEKDQCILCELEDLHHLFANMQTLASSYYLQSYLSPF 70 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99899999999999989999999982158656420999999999999999999999961589
No 61
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=42.41 E-value=23 Score=15.34 Aligned_cols=194 Identities=18% Similarity=0.270 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHC----CCCCCEECCCCC---CCCCCCCCCCCCCHHHHHHHH-----HHHH-HHHHHHH-------H
Q ss_conf 648999999999841----245615404554---565300444336013899876-----6899-9752335-------8
Q gi|254780370|r 256 MHMSRLAEEIILWST----PQFNFVRLSDAF---STGSSIMPQKRNPDGAELVRA-----KTGR-INGALLS-------L 315 (473)
Q Consensus 256 ~~l~rla~Dl~~~ss----~e~~~i~l~~~~---~~GSSiMPqKrNP~~~E~ir~-----~a~~-~~g~~~~-------~ 315 (473)
..|.=++||=-+++- .++...++.|+. ..| |.||+=+..|-=|- -+++ ++|.++. +
T Consensus 267 ADLaNl~NEAALlAAR~n~~~i~~~~~eeA~Drv~~G----~ekKsr~is~~eK~~vAYHEaGHAl~G~~~~~~DpV~Kv 342 (505)
T TIGR01241 267 ADLANLLNEAALLAARKNKTEITMNDIEEAVDRVIAG----LEKKSRVISEKEKKIVAYHEAGHALVGLLLKDADPVHKV 342 (505)
T ss_pred HHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHHHHCC----CCCCCCCCCHHHCCEEEEECHHHHHHHHHCCCCCCCCCE
T ss_conf 8899999999999861798656288898787765227----667885326777422201115789999735344752325
Q ss_pred HHHHHCC-CCHHCCCHHHH-HHHHHHHHHHHHHHHHHHH-HHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHH
Q ss_conf 7674048-40000100100-5579889999998656765-2305866652101211237844399999999985399979
Q gi|254780370|r 316 LTIMKGL-PLAYSKDMQED-KEPVFDALETLQIIILAIS-AMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFR 392 (473)
Q Consensus 316 ~~~~~~~-p~~~~rDlq~~-~~~l~~ai~~~~~~L~l~~-~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFR 392 (473)
.-+-+|. -+||.--+-++ -..+..=-+....+.-+|. .+=+-+-|-++..-.-+.+++.-||++|..+|.+.|||=.
T Consensus 343 TIIPRG~~AlG~t~~lP~~~D~~l~~k~~L~~~i~~~lGGRaAEe~~fG~~~vttGA~nD~~~AT~iAr~MVT~~GMS~k 422 (505)
T TIGR01241 343 TIIPRGQGALGYTQFLPEEGDKYLYTKKQLLAKIAVLLGGRAAEEIIFGEEEVTTGASNDLKQATNIARAMVTEWGMSEK 422 (505)
T ss_pred EECCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 63147844155168367744410036889999999873203100223078873236211589999999973153367420
Q ss_pred HHHHHHHHHHHHH-HHCCCCHHHCCHHHHHHHH----HCCCHHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999-9829896898999999400----1132689996599999962148999998999999999999999
Q gi|254780370|r 393 EAHYITGCTVSLA-EKNQCELAKLPLAMLQQIS----PVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQ 467 (473)
Q Consensus 393 eAH~iVg~lV~~A-~~~g~~l~el~~~~~~~~~----~~~~~di~~~ldp~~~v~~R~s~GGtap~~V~~~i~~~r~~L~ 467 (473)
- |- |.+. ..++-.+---....-+.+| ..+|.+|+.+++-.. +.+++-|.+.++.|+
T Consensus 423 l-----G~-v~~~~~~~~~~flg~~~~~~~~~Se~tA~~ID~EV~~i~~~~Y-------------~~A~~iL~e~~~~L~ 483 (505)
T TIGR01241 423 L-----GP-VAYGQSDGGEVFLGRGFAKAKEYSEETAREIDEEVKRIIEEAY-------------KRAKQILTENRDELE 483 (505)
T ss_pred C-----CC-CEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_conf 0-----45-1220234677679876544412218899999999999999999-------------999999986488999
Q ss_pred HHHHC
Q ss_conf 85612
Q gi|254780370|r 468 NIPKK 472 (473)
Q Consensus 468 ~~~~~ 472 (473)
.+-++
T Consensus 484 ~~a~~ 488 (505)
T TIGR01241 484 LLAKE 488 (505)
T ss_pred HHHHH
T ss_conf 99998
No 62
>COG0092 RpsC Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]
Probab=42.15 E-value=24 Score=15.31 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99865676523058666521012112378443999999999853999799999999999999982989
Q gi|254780370|r 344 LQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCE 411 (473)
Q Consensus 344 ~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~ 411 (473)
+...|..+.+.- ...+|-...++-=-+..+.|..+|..| +.|++||-|-..+=.-++.+-.+|+.
T Consensus 76 L~~~l~k~~g~~-~v~I~i~EV~~peL~A~lvA~~IA~qL--Errv~FRRA~k~ai~~~M~aGAkGik 140 (233)
T COG0092 76 LRKELEKLFGKE-NVQINIEEVKKPELDAQLVAESIAQQL--ERRVSFRRAMKRAIQRAMRAGAKGIK 140 (233)
T ss_pred HHHHHHHHHCCC-CCEEEEEECCCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999984999-744999976787849899999999999--74408999999999999973686559
No 63
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II; InterPro: IPR011287 This entry represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids . These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=41.65 E-value=16 Score=16.44 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=22.7
Q ss_pred HHHHHHHHHHCCCEECCC-HHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf 865676523058666521-01211237844399999999985
Q gi|254780370|r 346 IIILAISAMIEDLTVNKD-RLQEAATKSHSTATDLADWLVSH 386 (473)
Q Consensus 346 ~~L~l~~~li~~l~vn~e-rm~~~~~~~~~~AT~lAd~Lv~~ 386 (473)
.+|+-.-++...|+=+++ +|.-+|..| +|.+.|.-.|..+
T Consensus 272 ~AL~~A~~~~~~ItG~~d~Nl~GACaGG-lT~aAL~GHl~~~ 312 (560)
T TIGR01839 272 DALEEAVDAVRAITGSRDLNLLGACAGG-LTVAALLGHLQAK 312 (560)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHCCCHH-HHHHHHHHHHHHH
T ss_conf 9999999998751488760011015147-8999999899997
No 64
>TIGR02814 pfaD_fam PfaD family protein; InterPro: IPR014179 The protein PfaD is part of a four-gene locus, similar to polyketide biosynthesis systems, which is responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the entry are found in loci presumed to act in polyketide biosyntheses per se..
Probab=38.81 E-value=27 Score=14.98 Aligned_cols=63 Identities=14% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHHHHHCCCCCHH-----HHHHHHHHHHHHHHHHHCCC-EECCC--CCCHHHHHHHHHHHHHH-----H--CCCCCCC
Q ss_conf 999999987999989-----99999999999996664598-00156--64637999999997311-----1--0234201
Q gi|254780370|r 49 VHTTMLAKQGIISSE-----EAQKIIEGLKVIRAEIVDGS-FVFSR--DLEDIHMNIEARLTSLI-----G--SIAGKMH 113 (473)
Q Consensus 49 Ah~~~l~~~gii~~~-----~~~~i~~al~~i~~~~~~~~-~~~~~--~~edvh~~iE~~l~~~~-----G--~~~~~lH 113 (473)
=.++.+++.|+|--= ..+++.+|+.+|..+...|. +-+.- +..| ...|..+++.+ - |++.++.
T Consensus 34 eLVialg~aG~lgfFGAGGL~l~~VE~Ai~~Iq~~L~~g~~YgvNL~hs~~~--p~~E~~~vdL~Lr~gV~~vEAsAFm~ 111 (449)
T TIGR02814 34 ELVIALGRAGLLGFFGAGGLSLEEVEQAIHRIQQALQNGPAYGVNLIHSPSD--PELENGLVDLLLRHGVRIVEASAFMQ 111 (449)
T ss_pred HHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--HHHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf 8999997424233212468886899999999998627998606778647778--35689999999736996799872020
No 65
>PTZ00084 40S ribosomal protein S3; Provisional
Probab=38.00 E-value=27 Score=14.89 Aligned_cols=68 Identities=22% Similarity=0.203 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHH-HHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999986567652-305866652101211237844399999999985399979999999999999998298
Q gi|254780370|r 341 LETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQC 410 (473)
Q Consensus 341 i~~~~~~L~l~~~-li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~ 410 (473)
++.+...|.-.-. --..+++|-+...+---+-.+.|..+|..| +.++|||-|-..+=+-++.+-+.|+
T Consensus 66 I~~L~~~l~k~~~~~~~~v~I~V~eV~~p~l~A~lvAe~IA~qL--errv~fRRA~k~ai~~~M~aGAkGi 134 (220)
T PTZ00084 66 IRELTSLIQKRFNYKEGKLQLFAERVEVRGLCAMAQAESLRFKL--LSGLPVRRAAYGIIRQVMESGAKGC 134 (220)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 99999999998489977437999994488849899999999999--7464289999999999997589667
No 66
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=37.99 E-value=6.6 Score=18.96 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCC
Q ss_conf 456530044433601389987668999752335876740484000010
Q gi|254780370|r 282 FSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKD 329 (473)
Q Consensus 282 ~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rD 329 (473)
|.+.|=+||||..-...---....++.+|..+++..- .|.-.|||-|
T Consensus 64 ~~G~nVTiP~K~~~~~~~d~l~~~A~~igAvNTi~~~-~g~l~G~NTD 110 (284)
T PRK12549 64 FNGLNITHPCKQAVIPLLDELSDDARALGAVNTVVFR-DGRRIGHNTD 110 (284)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEE-CCEEEEEECC
T ss_conf 9889981174999999970523789985652148975-9989998066
No 67
>TIGR01008 rpsC_E_A ribosomal protein S3; InterPro: IPR005703 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes ribosomal protein S3 of the eukaryotic cytosol and of the archaea.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=35.97 E-value=29 Score=14.69 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=50.3
Q ss_pred HHHHHHHHHHH-HHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHCCCC
Q ss_conf 99999986567-652305866652101211237844399999999985399979-9999999999999982989
Q gi|254780370|r 340 ALETLQIIILA-ISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFR-EAHYITGCTVSLAEKNQCE 411 (473)
Q Consensus 340 ai~~~~~~L~l-~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFR-eAH~iVg~lV~~A~~~g~~ 411 (473)
-+..+...|.- +.--+++.+++-+...+---+--..|..+|-.| +.|+-|| -||..+ +-|+.+=++|+.
T Consensus 59 rIr~LT~~l~~Rf~Fg~enPqi~V~~v~~P~L~A~v~A~~iA~~L--eRG~hFRRaAY~~~-rriM~aGAkGvE 129 (204)
T TIGR01008 59 RIRELTEKLQKRFKFGLENPQIDVEEVENPELNAKVQAEKIARSL--ERGLHFRRAAYTAV-RRIMEAGAKGVE 129 (204)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH--HCCHHHHHHHHHHH-HHHHHCCCCEEE
T ss_conf 188999999875205899965876417898988889999999998--45347789999999-999825695279
No 68
>PRK04191 rps3p 30S ribosomal protein S3P; Reviewed
Probab=35.94 E-value=29 Score=14.69 Aligned_cols=53 Identities=17% Similarity=0.181 Sum_probs=28.5
Q ss_pred CCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5866652101211237844399999999985399979999999999999998298
Q gi|254780370|r 356 EDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQC 410 (473)
Q Consensus 356 ~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~ 410 (473)
++..+|-....+--.+-.+.|..+|..| ++++|||-|-..+=+-++.+-..|+
T Consensus 76 ~~~~I~V~EV~~P~l~A~lvAe~IA~qL--Err~~fRRa~k~ai~~~m~aGAkGi 128 (225)
T PRK04191 76 ENPQIDVKEVENPELNARVVAFRIANAL--ERGWHFRRAAHSAIRRIMEAGAKGV 128 (225)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 9744999995187748899999999998--6242899999999999997489768
No 69
>TIGR01009 rpsC_bact ribosomal protein S3; InterPro: IPR005704 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. This family describes the bacterial type of ribosomal protein S3 and also and many chloroplast forms. Chloroplast and mitochondrial forms have large, variable inserts between conserved N-terminal and C-terminal domains. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0015935 small ribosomal subunit.
Probab=34.93 E-value=30 Score=14.58 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999986567652305866652101211237844399999999985399979999999999999998298
Q gi|254780370|r 340 ALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQC 410 (473)
Q Consensus 340 ai~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~ 410 (473)
-++.+...|.-+......+.+|=.-.++--.+-.+.|.++|.-| +.-+|||.|=.-.=..++.+-.+|.
T Consensus 87 ~iE~l~~~l~k~~~~~k~v~i~I~EVk~p~ldA~LvA~~IA~Ql--E~RVSFRrAmK~A~~~~~k~GakGi 155 (217)
T TIGR01009 87 EIEKLKKALQKLTGSVKEVQINIKEVKRPELDAQLVAQNIARQL--ENRVSFRRAMKKAIQSAMKAGAKGI 155 (217)
T ss_pred HHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCHHHHHHHHHHHH--HHHCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 58999999998847835899989874885738788998999998--6202046899999999862689888
No 70
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=33.42 E-value=32 Score=14.42 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999989999999999999998
Q gi|254780370|r 447 FGGTCAAEVLKQVTYWRNRIQN 468 (473)
Q Consensus 447 ~GGtap~~V~~~i~~~r~~L~~ 468 (473)
.+||+|.+|+.-+..+...+++
T Consensus 78 iaGp~PaeVrsGL~a~~d~iEn 99 (103)
T cd07049 78 LAGPSPAEVRSGLNAAIDFIEN 99 (103)
T ss_pred EECCCHHHHHHHHHHHHHHHHC
T ss_conf 7079979999899999999873
No 71
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=31.47 E-value=5.7 Score=19.37 Aligned_cols=50 Identities=22% Similarity=0.138 Sum_probs=32.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHH
Q ss_conf 545653004443360138998766899975233587674048400001001
Q gi|254780370|r 281 AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQ 331 (473)
Q Consensus 281 ~~~~GSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq 331 (473)
.|.|-|=+||||..-..+=--..-.++.+|..+++..- .|--.|||-|..
T Consensus 268 ~f~G~sVTiP~K~~i~~~lDeld~~A~~iGAVNTiv~~-~gkl~G~NTD~~ 317 (477)
T PRK09310 268 PFLGLSVTMPLKTAVLDFLDKLDPSVKLCGSCNTLVFR-NGKILGYNTDGE 317 (477)
T ss_pred CCCEEEECCCCHHHHHHHHCCCCHHHHHHCCEEEEEEE-CCEEEEEECCHH
T ss_conf 99889988077999998715289889973766589988-998999825789
No 72
>TIGR02290 M3_fam_3 oligoendopeptidase, pepF/M3 family; InterPro: IPR011977 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This family consists of probable oligoendopeptidases belonging to MEROPS peptidase family M3, subfamily M3B (clan MA(E)). It is related to lactococcal PepF and group B streptococcal PepB (IPR004438 from INTERPRO) but in a distinct clade with considerable sequence differences not only to IPR004438 from INTERPRO but also to IPR011976 from INTERPRO. Members are not characterised with respect to their substrates and the activity profile may differ..
Probab=30.76 E-value=36 Score=14.14 Aligned_cols=148 Identities=14% Similarity=0.224 Sum_probs=76.8
Q ss_pred CCCCC-CCHH---HHHHHCCCCCCCCCHHHH-CCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCEECCC
Q ss_conf 56667-8998---963103876434785673-02788---6424677768876648999999999841245--6154045
Q gi|254780370|r 211 GTSFP-IDRH---FTAKELGFREPTRNSIDS-VSDRD---FILECLSHSAICAMHMSRLAEEIILWSTPQF--NFVRLSD 280 (473)
Q Consensus 211 GT~~~-idr~---~~a~~LGf~~~~~ns~da-v~sRd---~~~e~~~~l~~~~~~l~rla~Dl~~~ss~e~--~~i~l~~ 280 (473)
..++| .-|. ..|++||.....+.-+.| +..-+ ...-+--+...|--+.++|+-++--+...=| +||+..+
T Consensus 275 ~en~pR~~~rY~~~KAklLG~~~L~~~D~~AP~~~~~~e~~~~~f~EA~~lvl~~F~~fsP~~A~~A~~af~~~WIDa~p 354 (600)
T TIGR02290 275 KENYPRLFRRYLKLKAKLLGKEKLDFYDLLAPLGDSDSEAKTYTFDEAKELVLEAFGKFSPEMADFAEKAFEEGWIDAEP 354 (600)
T ss_pred HHHCCCHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 98528058999999888718201763165467888777766075898999999998763578999999997579620347
Q ss_pred --CCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCHHHHHHHHHHH-HHHHHHHHHHHHH--
Q ss_conf --54565--3004443360138998766899975233587674048400001001005579889-9999986567652--
Q gi|254780370|r 281 --AFSTG--SSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDA-LETLQIIILAISA-- 353 (473)
Q Consensus 281 --~~~~G--SSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~p~~~~rDlq~~~~~l~~a-i~~~~~~L~l~~~-- 353 (473)
+=.+| ..-+|-+|-|.++-.-.| ....++++.|=++.+||.-+-.+++.+-.. =-.+..+-.++.+
T Consensus 355 RpGK~gGAFC~~~~~~~~P~vl~Ny~G-------~~~dV~TLAHELGHA~H~~~~~d~p~l~~~yPmtlAETASiF~E~l 427 (600)
T TIGR02290 355 RPGKRGGAFCTGFPPSKEPRVLMNYDG-------SFSDVSTLAHELGHAYHSELAKDQPLLNARYPMTLAETASIFAEML 427 (600)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCC-------CHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHH
T ss_conf 833889853368888766614624588-------8415899989865589999874137254058873367899976899
Q ss_pred ----HHCCCEECCCHH
Q ss_conf ----305866652101
Q gi|254780370|r 354 ----MIEDLTVNKDRL 365 (473)
Q Consensus 354 ----li~~l~vn~erm 365 (473)
++..++-.+++.
T Consensus 428 ~~d~ll~~ak~~eeK~ 443 (600)
T TIGR02290 428 LFDALLKEAKTEEEKL 443 (600)
T ss_pred HHHHHHHHHCHHHHHH
T ss_conf 9999988308088989
No 73
>TIGR02867 spore_II_P stage II sporulation protein P; InterPro: IPR010897 This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation . SpoIIP is one of the three genes (spoIID, spoIIM and spoIIP, , , ), under the control of sigma E, that have been shown to be essential for the engulfment of the forespore by the mother cell. Their products are involved in degradation of the septal peptidoglycan and mutations in spoIID, spoIIM or spoIIP block sporulation at morphological stage II, prior to the stage of engulfment. These three genes are absolutely conserved (sometimes even duplicated) in all endospore formers ..
Probab=30.56 E-value=36 Score=14.12 Aligned_cols=36 Identities=33% Similarity=0.371 Sum_probs=27.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 9999999985399979999999999999998298968
Q gi|254780370|r 377 TDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELA 413 (473)
Q Consensus 377 T~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~ 413 (473)
||+-..|+ +.++.+-.||+..++.|..++++.+++.
T Consensus 63 tD~~~~L~-h~~~~Y~~SY~~SR~tv~~~l~~~~d~~ 98 (221)
T TIGR02867 63 TDIQSKLV-HDGLNYEQSYERSRETVKKALKENKDLK 98 (221)
T ss_pred CCHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 04355421-0365866888999999999984089904
No 74
>TIGR01267 Phe4hydrox_mono phenylalanine-4-hydroxylase; InterPro: IPR005960 This entry represents the small, monomeric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in a certain Gram-negative bacteria. The enzyme is biopterin and metal dependent, and acts to irreversibly convert phenylalanine to tyrosine, the rate-limiting step in phenylalanine catabolism in some systems: L-phenylalanine + tetrahydrobiopterin + O2 = L-tyrosine + dihydrobiopterin + H2O The structure of PAH from Colwellia psychrerythraea (strain 34H / ATCC BAA-681), which binds tetrahydrobiopterin (BH4) as cofactor, is a cold-active form of the enzyme that has increased stability and flexibility around the active site . More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=30.17 E-value=26 Score=15.04 Aligned_cols=82 Identities=21% Similarity=0.315 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-H---HHHHCCCCCCEECCCC-C-CCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 6424677768876648999999-9---9984124561540455-4-5653004443360138-99876689997523358
Q gi|254780370|r 243 FILECLSHSAICAMHMSRLAEE-I---ILWSTPQFNFVRLSDA-F-STGSSIMPQKRNPDGA-ELVRAKTGRINGALLSL 315 (473)
Q Consensus 243 ~~~e~~~~l~~~~~~l~rla~D-l---~~~ss~e~~~i~l~~~-~-~~GSSiMPqKrNP~~~-E~ir~~a~~~~g~~~~~ 315 (473)
.++++...-.=.++..+++..+ . .-|.|-|||+|+-+.+ . .-|.-||--|+--+.+ + ++...-++. .+
T Consensus 126 vFAdf~~~YGK~g~ka~alg~~e~laRLYWyT~EfGLv~t~~gP~riyGaGilSS~~E~~y~~~---s~~p~hv~F--dl 200 (251)
T TIGR01267 126 VFADFLEAYGKKGVKAKALGAAEFLARLYWYTVEFGLVETDAGPLRIYGAGILSSKKELVYALE---SDEPLHVAF--DL 200 (251)
T ss_pred CHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHCEECCCCCEEEECCCCCCCCCCEEEEEC---CCCCCCCCC--CH
T ss_conf 0468887516420000111112567777776654200007998646302520116110145431---788555577--86
Q ss_pred HHHHHCCCCHHCCC-HHH
Q ss_conf 76740484000010-010
Q gi|254780370|r 316 LTIMKGLPLAYSKD-MQE 332 (473)
Q Consensus 316 ~~~~~~~p~~~~rD-lq~ 332 (473)
+.+|+ ++|.-| +|.
T Consensus 201 ~~~Mr---T~YrID~fQ~ 215 (251)
T TIGR01267 201 LEVMR---TRYRIDKFQK 215 (251)
T ss_pred HHHHC---CCCCCCCCCC
T ss_conf 87604---8650102033
No 75
>KOG0042 consensus
Probab=28.59 E-value=39 Score=13.90 Aligned_cols=81 Identities=19% Similarity=0.102 Sum_probs=47.8
Q ss_pred HHHHHHHCCCCHHHHHHHH-------HHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHH------CCHHHHHHHCCC
Q ss_conf 9999985399979999999-------999999998298968989999994001132689996------599999962148
Q gi|254780370|r 380 ADWLVSHAGLPFREAHYIT-------GCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDI------LKVESSISSRKS 446 (473)
Q Consensus 380 Ad~Lv~~~GipFReAH~iV-------g~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~------ldp~~~v~~R~s 446 (473)
--.|+.+.|++-+-|.|.. -++...|...|+.+. +....+....|.++++++.. ..|...+++|..
T Consensus 476 ~~~LvQdyg~e~~vA~hLs~tYG~rA~~Va~~~k~tgkk~P-ivg~rl~~~fpyleAEv~y~v~~e~a~~~~Dv~arr~r 554 (680)
T KOG0042 476 YIRLVQDYGMESDVAQHLSQTYGDRAFRVAKMAKSTGKKWP-IVGKRLHPEFPYLEAEVRYGVVREYACTPVDVIARRLR 554 (680)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999981872899999987644128999999986187476-31210467887349998855667652238899998877
Q ss_pred CCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999989999999999999998
Q gi|254780370|r 447 FGGTCAAEVLKQVTYWRNRIQN 468 (473)
Q Consensus 447 ~GGtap~~V~~~i~~~r~~L~~ 468 (473)
+.+.|++++|+.|.+
T Consensus 555 -------~~~~q~~~ar~fl~~ 569 (680)
T KOG0042 555 -------EKKKQIEYARTFLNS 569 (680)
T ss_pred -------HHHHHHHHHHHHHHH
T ss_conf -------888889999876666
No 76
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=27.73 E-value=40 Score=13.80 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHCCHHHHHHHCCCCCCCCHHHH
Q ss_conf 99999999985399979999999999999998298968989999994001132689996599999962148999998999
Q gi|254780370|r 376 ATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEV 455 (473)
Q Consensus 376 AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~ldp~~~v~~R~s~GGtap~~V 455 (473)
+.++.|-||.+.-+.--+|-.+|..+.+.+..+...+.+= +...+..+++-.+.. |. +--.+.
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K-----------~~r~i~~ml~~~~~~--r~----~~~~~l 88 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEK-----------IPRKIEEMLSDLEVA--RQ----SEMDEL 88 (108)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHCCCC--CC----CHHHHH
T ss_conf 9999999998278789999999999999989876027776-----------368999998450200--00----248888
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999856129
Q gi|254780370|r 456 LKQVTYWRNRIQNIPKKI 473 (473)
Q Consensus 456 ~~~i~~~r~~L~~~~~~l 473 (473)
..-|..++.++..++.++
T Consensus 89 ~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 89 TERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 989999999999999876
No 77
>PRK06131 dihydroxy-acid dehydratase; Validated
Probab=27.54 E-value=30 Score=14.62 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=44.3
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 0145200166530113344456788888878620698999874542335-653203356667899896310387643478
Q gi|254780370|r 155 HHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECP-LGAAALAGTSFPIDRHFTAKELGFREPTRN 233 (473)
Q Consensus 155 ~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~p-LG~~A~~GT~~~idr~~~a~~LGf~~~~~n 233 (473)
+..+.+||+-++++.-.+|--+...+.+..=.-+.+.|.+.... .|| -|+|++.||.-- -..+++-||+.-|.-.
T Consensus 148 ~gGpm~~G~~~g~~~~~~~dv~e~~g~~~~G~is~~el~~~e~~--acp~~GsC~gmgTANT--M~~~~EaLGlsLPGsa 223 (577)
T PRK06131 148 SGGPMLNGKHKGERLGSGTDVWKYWEELRAGEIDLAEFLEAEAG--MARSAGTCNTMGTAST--MACMAEALGMSLPGNA 223 (577)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHH--HCCCCCCCCCEEEHHH--HHHHHHHHCCCCCCCC
T ss_conf 46988878667766775305999899987588789999999986--1899986575230999--9999999648887777
Q ss_pred HHHHCC
Q ss_conf 567302
Q gi|254780370|r 234 SIDSVS 239 (473)
Q Consensus 234 s~dav~ 239 (473)
+.-|+.
T Consensus 224 ~~PA~~ 229 (577)
T PRK06131 224 AIPAVD 229 (577)
T ss_pred CCCCCC
T ss_conf 889988
No 78
>KOG0625 consensus
Probab=27.43 E-value=41 Score=13.77 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHH-----HCCCCCHHHHHHHHHH
Q ss_conf 999999999999-----8799998999999999
Q gi|254780370|r 44 ILGSKVHTTMLA-----KQGIISSEEAQKIIEG 71 (473)
Q Consensus 44 i~~~~Ah~~~l~-----~~gii~~~~~~~i~~a 71 (473)
+.+.+|.+.... .-||++--++..|.+-
T Consensus 73 ~I~~iaAaNGv~rlivGqnG~LSTPAvS~iIRk 105 (558)
T KOG0625 73 IIAKIAAANGVGRLIVGQNGILSTPAVSCIIRK 105 (558)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 999998526851588635870365678889876
No 79
>PRK13017 dihydroxy-acid dehydratase; Provisional
Probab=26.81 E-value=31 Score=14.56 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=44.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 0145200166530113344456788888878620698999874542335-653203356667899896310387643478
Q gi|254780370|r 155 HHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECP-LGAAALAGTSFPIDRHFTAKELGFREPTRN 233 (473)
Q Consensus 155 ~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~p-LG~~A~~GT~~~idr~~~a~~LGf~~~~~n 233 (473)
+..+.+||.-.+++....|--+...+....=.-+.+-|.+... +-|| -|+|++.||.-- -..++|-||+.-|.-.
T Consensus 151 ~gGpm~~G~~~g~~~~~~~~~~e~~g~~~~G~is~~el~~~e~--~a~p~~GsC~gmgTANT--M~~~~EaLGmsLPGsa 226 (595)
T PRK13017 151 SGGPMLDGWHEGERVGSGTVIWKARELLAAGEIDYEEFMELVA--SSAPSVGHCNTMGTAST--MNALAEALGMSLPGCA 226 (595)
T ss_pred ECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHH--HCCCCCCCCCCCCCHHH--HHHHHHHHCCCCCCCC
T ss_conf 6788678887884235541378888887758877999999997--32899985444212888--9999999668877776
Q ss_pred HHHHCCC
Q ss_conf 5673027
Q gi|254780370|r 234 SIDSVSD 240 (473)
Q Consensus 234 s~dav~s 240 (473)
++-|+.+
T Consensus 227 ~~PA~~~ 233 (595)
T PRK13017 227 AIPAPYR 233 (595)
T ss_pred CCCCCCH
T ss_conf 8899988
No 80
>pfam12037 DUF3523 Domain of unknown function (DUF3523). This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with pfam00004. This domain has a conserved LER sequence motif.
Probab=25.34 E-value=44 Score=13.52 Aligned_cols=74 Identities=20% Similarity=0.237 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCCCCCHHHHH
Q ss_conf 999997447730145200166530113344456788888878620698999874542335653-2033566678998963
Q gi|254780370|r 144 LLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA-AALAGTSFPIDRHFTA 222 (473)
Q Consensus 144 l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~l~~~~~~l~rd~~rL~~~~~~~~~~pLG~-~A~~GT~~~idr~~~a 222 (473)
.++.|..+|.++++|+| .+.-+||++ +..=...|.-|.++|..+...+-...+|- +|=.||.+. ..++-
T Consensus 193 ~~~~l~~ka~e~R~t~l-------e~I~t~f~~-ig~G~~~ll~D~~Kl~~~vgglT~LA~GvYtar~gt~V~--~~yiE 262 (272)
T pfam12037 193 NRRMLKEKANEERETWL-------ESINTTFSH-IGGGFRALLTDKNKLTMAVGGLTALAAGIYTTKEGTRVT--WRYIE 262 (272)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_conf 99999999988899999-------999999999-989999998488999999999999999987751223899--99999
Q ss_pred HHCCC
Q ss_conf 10387
Q gi|254780370|r 223 KELGF 227 (473)
Q Consensus 223 ~~LGf 227 (473)
..||=
T Consensus 263 ~rLGK 267 (272)
T pfam12037 263 RILGK 267 (272)
T ss_pred HHCCC
T ss_conf 98389
No 81
>PRK10963 hypothetical protein; Provisional
Probab=25.30 E-value=44 Score=13.52 Aligned_cols=18 Identities=6% Similarity=0.189 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999867788999
Q gi|254780370|r 129 WIKEKTLEITNDLKKLLT 146 (473)
Q Consensus 129 ~lr~~l~~l~~~l~~l~~ 146 (473)
.+|++...+..++..|++
T Consensus 48 ~LRer~~~L~~~L~~Li~ 65 (223)
T PRK10963 48 RQRNHIHVLEEEMTLLME 65 (223)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999
No 82
>TIGR00906 2A0303 cationic amino acid transport permease; InterPro: IPR004755 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Some proteins in this family are low-affinity, high capacity permeases involved in the transport of arginine, lysine and ornithine, the cationinc amino acids.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=24.40 E-value=46 Score=13.41 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999999853999799999999999
Q gi|254780370|r 378 DLADWLVSHAGLPFREAHYITGCTV 402 (473)
Q Consensus 378 ~lAd~Lv~~~GipFReAH~iVg~lV 402 (473)
+|+|.|-. |-= =||..|+-||
T Consensus 412 ~LvDllSi--gTL--laYslVA~cv 432 (616)
T TIGR00906 412 ALVDLLSI--GTL--LAYSLVAACV 432 (616)
T ss_pred HHHHHHHH--HHH--HHHHHHHHHH
T ss_conf 99999889--999--9999999999
No 83
>PRK13775 formimidoylglutamase; Provisional
Probab=24.25 E-value=33 Score=14.38 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=14.5
Q ss_pred CCCCCCCCHHHHHCCCCCCC
Q ss_conf 96422320233320332384
Q gi|254780370|r 1 MSKKIKSNEVNQMWGGRFSS 20 (473)
Q Consensus 1 m~~~~~~~~~~~lW~grf~~ 20 (473)
|.|-|+.+++. +|.||...
T Consensus 1 ~~~~y~~~~~~-~w~gr~dd 19 (328)
T PRK13775 1 MLEDYYPSTTS-YYHGGIDD 19 (328)
T ss_pred CCCCCCCCCHH-HCCCCCCC
T ss_conf 96555689835-40777677
No 84
>pfam11348 DUF3150 Protein of unknown function (DUF3150). This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=24.16 E-value=46 Score=13.38 Aligned_cols=46 Identities=17% Similarity=0.112 Sum_probs=21.8
Q ss_pred CHHHHHHHCCCCC------CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989631038764------347856730278864246777688766489999999
Q gi|254780370|r 217 DRHFTAKELGFRE------PTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEI 265 (473)
Q Consensus 217 dr~~~a~~LGf~~------~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla~Dl 265 (473)
+++.+++.++|+= |..++ ........+.-+....+...+.+-|.++
T Consensus 132 ~~e~v~~~l~F~~~~~~v~~~~~~---~~~~gl~~~v~gL~~~L~~Eva~~a~~~ 183 (257)
T pfam11348 132 SKEDVDKRLSFDYQAIRVQPPEFS---GADDGLDEEVNGLGGQLFQEIAKEARKS 183 (257)
T ss_pred CHHHHHHHCCCEEEEEEEECCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989999741761489862076533---2000179999878899999999999999
No 85
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=23.94 E-value=47 Score=13.35 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHHCCCEECCCHHHHCC---CC----CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 76523058666521012112---37----84439999999998539997999999999999
Q gi|254780370|r 350 AISAMIEDLTVNKDRLQEAA---TK----SHSTATDLADWLVSHAGLPFREAHYITGCTVS 403 (473)
Q Consensus 350 l~~~li~~l~vn~erm~~~~---~~----~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~ 403 (473)
++..+=..++++.|.+-... .. .|.....++++.+ +.|+|..+|++++...+.
T Consensus 139 lf~~~G~~~~v~~E~~~d~~ta~~g~~~~~f~~ieal~~a~v-~~Gl~~~~A~~l~~~~~~ 198 (255)
T PRK06476 139 LFDALGTAVECESEEEFDLLAAASALMATYFGILETATQWLV-EQGLERQKARAYLAPLFA 198 (255)
T ss_pred HHHHCCCEEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHH
T ss_conf 998389989989578888999973451899999999999999-849999999999999999
No 86
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB; InterPro: IPR014132 This entry describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reduced sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterised polysaccharide deacetylase; the exact function this protein family is unknown..
Probab=23.71 E-value=47 Score=13.34 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHCCCCCC------------
Q ss_conf 8786206989998745-------423356532033566678998963103876434785673027886------------
Q gi|254780370|r 183 EMFGRDISRFFDSIER-------LDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDF------------ 243 (473)
Q Consensus 183 ~~l~rd~~rL~~~~~~-------~~~~pLG~~A~~GT~~~idr~~~a~~LGf~~~~~ns~dav~sRd~------------ 243 (473)
+.+.+|+.+=.++... +.++|-|+ . .-.-=.+|+.|||..+.|| + -|-|+||
T Consensus 81 E~ikkd~~~a~~~i~~~~g~~p~LlRpP~G~--f-----n~~~~~~ae~~GY~~V~Ws-W-HvdS~DWkNPG~e~iv~~V 151 (198)
T TIGR02764 81 EKIKKDLLRAQEIIEKLTGKKPTLLRPPNGA--F-----NKAVLKLAESLGYTVVHWS-W-HVDSLDWKNPGVESIVDRV 151 (198)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCCCC--C-----CHHHHHHHHHCCCCEEEEE-C-CCCCCCCCCCCEEHHHHHH
T ss_conf 4899999998888865105550165688986--0-----4689999997399189862-4-5588354578610001113
Q ss_pred ----------CHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCC
Q ss_conf ----------424-6777688766489999999998412456154045
Q gi|254780370|r 244 ----------ILE-CLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSD 280 (473)
Q Consensus 244 ----------~~e-~~~~l~~~~~~l~rla~Dl~~~ss~e~~~i~l~~ 280 (473)
++. ....+.....+|.+|-.+|. ...|-||.++|
T Consensus 152 ~~~~~~GdIiL~HDASd~~KqT~~ALp~Ii~~LK---~~GY~fv~ise 196 (198)
T TIGR02764 152 VKNTKPGDIILLHDASDSAKQTVKALPEIIKKLK---EKGYEFVTISE 196 (198)
T ss_pred HCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH---HCCCEEEEHHC
T ss_conf 3127998569876348797441778999989987---54953434220
No 87
>PRK08727 hypothetical protein; Validated
Probab=23.48 E-value=48 Score=13.30 Aligned_cols=52 Identities=12% Similarity=0.180 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHH
Q ss_conf 1237844399999999985399979999999999999998298968989999994
Q gi|254780370|r 368 AATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQ 422 (473)
Q Consensus 368 ~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~el~~~~~~~ 422 (473)
....|+....++++||+.+..-+|++.-.++-++-+.+.++++++ ++...++
T Consensus 175 a~~rgl~l~~~V~~Yll~r~~R~~~~l~~~l~~LD~~SL~~kr~i---Tip~vk~ 226 (233)
T PRK08727 175 AQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRI---TVPFLRR 226 (233)
T ss_pred HHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC---CHHHHHH
T ss_conf 998699999899999998568899999999999999999808988---8999999
No 88
>pfam10925 DUF2680 Protein of unknown function (DUF2680). Members in this family of proteins are annotated as yckD however currently no function is known.
Probab=23.26 E-value=48 Score=13.27 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCE
Q ss_conf 99999999999987999989999999999999966645980
Q gi|254780370|r 44 ILGSKVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSF 84 (473)
Q Consensus 44 i~~~~Ah~~~l~~~gii~~~~~~~i~~al~~i~~~~~~~~~ 84 (473)
...-+-.+.-+++.|+||++-++.|.+.++.-........|
T Consensus 17 ~el~Kqii~KyVe~G~iT~eQa~~i~~~id~r~~~~~qNgf 57 (59)
T pfam10925 17 AELRKQVIDKYVEAGVITKEQADHIKKNIDKRVEYMKQNGF 57 (59)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999982756499999999999999999998689
No 89
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit; InterPro: IPR008703 This family consists of several bacterial Na^+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na^+-translocating NADH: ubiquinone oxidoreductase (Na^+-NQR) generates an electrochemical Na^+ potential driven by aerobic respiration .; GO: 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006814 sodium ion transport.
Probab=22.81 E-value=33 Score=14.36 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=12.6
Q ss_pred HCCCCCCHH---HHHHHHHHHHHHH
Q ss_conf 014520016---6530113344456
Q gi|254780370|r 155 HHNTIMPGF---THLQTAQPVTFGH 176 (473)
Q Consensus 155 ~~~t~mpg~---TH~Q~A~P~T~g~ 176 (473)
..+-|.|+= ||.-+-.|++-++
T Consensus 221 ~~~GPhPaG~~g~hIh~~~Pi~~~~ 245 (466)
T TIGR01936 221 TVSGPHPAGLPGTHIHFIAPIGAEK 245 (466)
T ss_pred EEECCCCCCCCCEEEEEECCCCCCC
T ss_conf 9526658986230345304325886
No 90
>PRK00208 thiG thiazole synthase; Reviewed
Probab=22.75 E-value=49 Score=13.20 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9631038764347856730278864246777688766489999
Q gi|254780370|r 220 FTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLA 262 (473)
Q Consensus 220 ~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla 262 (473)
-.|=+||++.+..|| |++.-..-+..+.++.. ++.-+|+|
T Consensus 192 a~AMElG~DaVL~NT--AIA~A~dPv~MA~A~~~-AV~AGR~A 231 (256)
T PRK00208 192 AQAMELGADAVLLNT--AIAVAGDPVAMARAFKL-AVEAGRLA 231 (256)
T ss_pred HHHHHCCCCEEEHHH--HHHCCCCHHHHHHHHHH-HHHHHHHH
T ss_conf 999862554323556--87726998999999999-99999999
No 91
>cd01785 PDZ_GEF_RA PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=22.34 E-value=50 Score=13.15 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCCCCEECCCCCC------CCCCCCCCCCCCHHHHHHH
Q ss_conf 99999998412456154045545------6530044433601389987
Q gi|254780370|r 261 LAEEIILWSTPQFNFVRLSDAFS------TGSSIMPQKRNPDGAELVR 302 (473)
Q Consensus 261 la~Dl~~~ss~e~~~i~l~~~~~------~GSSiMPqKrNP~~~E~ir 302 (473)
-|.+++.++-.|||+-.-++.|+ +.+-+.-|+|=|+.+..+-
T Consensus 24 tA~evv~lal~eFgi~~~s~~ysLceVtV~~~g~IKQrRLPdql~~LA 71 (85)
T cd01785 24 TAHEVVMLALQEFGITAPSSNFSLCEVSVTPGGVIKQRRLPDQLQNLA 71 (85)
T ss_pred CHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCEEEECCCCHHHHHHH
T ss_conf 099999999998289888444079999963787267511886888898
No 92
>pfam00417 Ribosomal_S3_N Ribosomal protein S3, N-terminal domain. This family contains a central domain pfam00013, hence the amino and carboxyl-terminal domains are stored separately.
Probab=22.16 E-value=26 Score=15.03 Aligned_cols=11 Identities=55% Similarity=0.573 Sum_probs=8.0
Q ss_pred CCCCCCCHHHH
Q ss_conf 44433601389
Q gi|254780370|r 289 MPQKRNPDGAE 299 (473)
Q Consensus 289 MPqKrNP~~~E 299 (473)
|-||.||..+-
T Consensus 1 MGQKvnP~gfR 11 (62)
T pfam00417 1 MGQKVNPIGFR 11 (62)
T ss_pred CCCCCCCEEEE
T ss_conf 98876975032
No 93
>PRK06620 hypothetical protein; Validated
Probab=22.05 E-value=51 Score=13.11 Aligned_cols=43 Identities=12% Similarity=0.101 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 3784439999999998539997999999999999999829896
Q gi|254780370|r 370 TKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCEL 412 (473)
Q Consensus 370 ~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l 412 (473)
.++.....++.+||+.+..-+|+....+|.++=+.+.+++++.
T Consensus 162 ~r~i~i~~~vi~yl~~ri~Rs~~~l~~~v~~ld~~sl~~kr~I 204 (214)
T PRK06620 162 ISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKI 204 (214)
T ss_pred HCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8699887559999999851789999999999999999839998
No 94
>KOG1510 consensus
Probab=22.02 E-value=51 Score=13.11 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 04554565300444336013899----87668999752335876740484
Q gi|254780370|r 278 LSDAFSTGSSIMPQKRNPDGAEL----VRAKTGRINGALLSLLTIMKGLP 323 (473)
Q Consensus 278 l~~~~~~GSSiMPqKrNP~~~E~----ir~~a~~~~g~~~~~~~~~~~~p 323 (473)
.|..|..-+-.||.|.||+.+|= .+-.|.-+.-..-.+-..+..+|
T Consensus 31 pp~~l~~~e~~~~~~~~~~pa~p~~~~~~~laa~i~~~akqId~LIdsLP 80 (139)
T KOG1510 31 PPVPLPNNEPESPDKVNPIPAEPFEEYAQLLAADIAKKAKQIDTLIDSLP 80 (139)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 96458877778887778899883278999999999999988999998487
No 95
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=21.86 E-value=12 Score=17.22 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=8.5
Q ss_pred HCCCEECCCHHHHCC
Q ss_conf 058666521012112
Q gi|254780370|r 355 IEDLTVNKDRLQEAA 369 (473)
Q Consensus 355 i~~l~vn~erm~~~~ 369 (473)
..|.+++.|.||+++
T Consensus 253 wTG~~p~~e~mr~A~ 267 (272)
T PRK12550 253 YTGVRPTDELFAEAA 267 (272)
T ss_pred HHCCCCCHHHHHHHH
T ss_conf 709999999999999
No 96
>TIGR01399 hrcV type III secretion protein, HrcV family; InterPro: IPR006302 Members of this family are closely homologous to the flagellar biosynthesis protein FlhA and should all participate in type III secretion systems. Examples include InvA (Salmonella enterica), LcrD (Yersinia enterocolitica), HrcV (Xanthomonas), etc. Type III secretion systems resemble flagellar biogenesis systems, and may share the property of translocating special classes of peptides through the membrane. ; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=21.65 E-value=52 Score=13.06 Aligned_cols=110 Identities=15% Similarity=0.244 Sum_probs=62.6
Q ss_pred HHCCCEECCCHHHHCCCCCCCHH---HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCC--HHHCCHHHHHH-HH---
Q ss_conf 30586665210121123784439---99999999853999799999999999999982989--68989999994-00---
Q gi|254780370|r 354 MIEDLTVNKDRLQEAATKSHSTA---TDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCE--LAKLPLAMLQQ-IS--- 424 (473)
Q Consensus 354 li~~l~vn~erm~~~~~~~~~~A---T~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~--l~el~~~~~~~-~~--- 424 (473)
+++-|+-+---+-+.+.+- .+- +|+=-.|| ..++|=|+=--|-..++..|.+++=. |.|---..++. ++
T Consensus 528 ll~~mE~~ypeLvKEvqR~-lpl~ri~evLqRLv-~E~vSIRn~R~I~E~Li~W~~~EKDvv~LTEYVR~aLkR~I~~ry 605 (709)
T TIGR01399 528 LLDQMEREYPELVKEVQRV-LPLQRIAEVLQRLV-SEQVSIRNLRLILEALIEWAQKEKDVVLLTEYVRIALKRYICHRY 605 (709)
T ss_pred HHHHHHCCCCCHHHHHHHC-CCHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHH
T ss_conf 9999630448078999740-79024899999871-279858899999999987601014500224778998999999998
Q ss_pred ---------HCCCHHHHHHCCHHHHHHHCCCCCCC----CHHHHHHHHHHHHHHHHHH
Q ss_conf ---------11326899965999999621489999----9899999999999999985
Q gi|254780370|r 425 ---------PVITSAVYDILKVESSISSRKSFGGT----CAAEVLKQVTYWRNRIQNI 469 (473)
Q Consensus 425 ---------~~~~~di~~~ldp~~~v~~R~s~GGt----ap~~V~~~i~~~r~~L~~~ 469 (473)
-.++.|+.+. .+.+| |.+.+|| .|+....-++..++.+...
T Consensus 606 a~~~~~L~~~l~~~e~E~~--iR~~i--RQTs~G~yLaL~p~~~~~ll~~~~~~~~~~ 659 (709)
T TIGR01399 606 ANGGRVLSAYLIDPEIEEL--IREAI--RQTSTGTYLALDPEASEQLLDQIRQILGDL 659 (709)
T ss_pred HCCCCEEEEEECCCHHHHH--HHHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 3589647999717205788--76030--017897742489899999999999986311
No 97
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=21.33 E-value=9.1 Score=18.05 Aligned_cols=14 Identities=14% Similarity=0.093 Sum_probs=6.3
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 45653004443360
Q gi|254780370|r 282 FSTGSSIMPQKRNP 295 (473)
Q Consensus 282 ~~~GSSiMPqKrNP 295 (473)
|.|.|=+||||..-
T Consensus 59 ~~G~nVT~P~K~~v 72 (275)
T PRK00258 59 GKGANVTVPFKEAA 72 (275)
T ss_pred CCEEEECHHHHHHH
T ss_conf 87799668989999
No 98
>KOG3124 consensus
Probab=21.31 E-value=53 Score=13.02 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HHHHHCCCCHH
Q ss_conf 443999999999853999799999999999----99998298968
Q gi|254780370|r 373 HSTATDLADWLVSHAGLPFREAHYITGCTV----SLAEKNQCELA 413 (473)
Q Consensus 373 ~~~AT~lAd~Lv~~~GipFReAH~iVg~lV----~~A~~~g~~l~ 413 (473)
|.....|||-=|+ .|+|+|.||+.....+ +.-+..+..+.
T Consensus 178 f~~ieaLadGgVk-mGlPr~lA~~laaqtllGAakMVl~s~qHP~ 221 (267)
T KOG3124 178 FVAIEALADGGVK-MGLPRQLAYRLAAQTLLGAAKMVLASGQHPA 221 (267)
T ss_pred HHHHHHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 9999987444500-3999899999888998718989986168918
No 99
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=20.88 E-value=26 Score=15.01 Aligned_cols=19 Identities=42% Similarity=0.625 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHCCCCCCCC
Q ss_conf 4542335653203356667
Q gi|254780370|r 197 ERLDECPLGAAALAGTSFP 215 (473)
Q Consensus 197 ~~~~~~pLG~~A~~GT~~~ 215 (473)
+-+..+.||-+|++||.+|
T Consensus 5 KvILAgALGiAALaGTNlP 23 (213)
T PRK06763 5 KVILAGALGIAALSGTNLP 23 (213)
T ss_pred EEEEECHHHHHHHHCCCCC
T ss_conf 3888130333545348887
No 100
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=20.66 E-value=54 Score=12.93 Aligned_cols=40 Identities=23% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHHCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9631038764347856730278864246777688766489999
Q gi|254780370|r 220 FTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLA 262 (473)
Q Consensus 220 ~~a~~LGf~~~~~ns~dav~sRd~~~e~~~~l~~~~~~l~rla 262 (473)
-.|=+||++.+..|| |++.-..-+..+.++.. ++.-+|++
T Consensus 190 a~aMElG~DaVLvNT--AIA~A~dPv~MA~A~~~-Av~AGR~a 229 (246)
T pfam05690 190 AQAMELGADAVLLNT--AIARAKDPVAMARAFKL-AVEAGRLA 229 (246)
T ss_pred HHHHHCCCCEEEHHH--HHHCCCCHHHHHHHHHH-HHHHHHHH
T ss_conf 999974567777306--77737998999999999-99999999
No 101
>TIGR00625 tfb2 Transcription factor tfb2; InterPro: IPR004598 Members of this family are part of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. The core-TFIIH basal transcription factor complex has six subunits, this is the p52 subunit.; GO: 0003702 RNA polymerase II transcription factor activity, 0006281 DNA repair, 0006355 regulation of transcription DNA-dependent, 0005634 nucleus.
Probab=20.45 E-value=34 Score=14.25 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHCCCEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 99999865676523058666521012112378443999999999853999799999999999999982989689
Q gi|254780370|r 341 LETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAK 414 (473)
Q Consensus 341 i~~~~~~L~l~~~li~~l~vn~erm~~~~~~~~~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g~~l~e 414 (473)
+.........+..++=+ +|-+|-+++++.+| ++|.-+..||-.+ ||-...++..+-.+++..+.-
T Consensus 357 i~LF~~l~aRF~NmVvg-~iTReSirrAl~nG-ItA~QII~yL~Th-------AHP~MrrlaeekleKkleldP 421 (507)
T TIGR00625 357 IALFAELKARFSNMVVG-QITRESIRRALANG-ITAEQIIAYLETH-------AHPQMRRLAEEKLEKKLELDP 421 (507)
T ss_pred HHHHHHHHCCCCCEEEE-EECHHHHHHHHHCC-CCHHHHHHHHCCC-------CCHHHHHHHHHHHHHHCCCCC
T ss_conf 99998764025542788-65467899987416-5488899974247-------877778877876542103588
No 102
>KOG2528 consensus
Probab=20.43 E-value=55 Score=12.90 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 439999999998539997999999999999999829
Q gi|254780370|r 374 STATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQ 409 (473)
Q Consensus 374 ~~AT~lAd~Lv~~~GipFReAH~iVg~lV~~A~~~g 409 (473)
..++.|.+.+.. .| .+|+-||+++..-.++.
T Consensus 388 ~~s~~L~~ai~~-~g----~~y~~Ig~lfa~qpk~D 418 (490)
T KOG2528 388 VDSRPLNEAIGL-TG----DAYHEIGELFAEQPKQD 418 (490)
T ss_pred CCCCCHHHHHHH-HH----HHHHHHHHHHHCCCCCC
T ss_conf 234334665413-15----77899999860364010
No 103
>TIGR01229 rocF_arginase arginase; InterPro: IPR014033 L-Arginine is converted to nitric oxide and citrulline by the enzyme nitric oxide synthase and by the enzyme arginase as a part of the hepatic urea cycle. Arginase is a manganese metalloenzyme containing a metal-activated hydroxide ion, a critical nucleophile in metalloenzymes that catalyze hydrolysis or hydration reactions. A hydrogen bond formed by the metal-bound hydroxide holds the enzyme in the proper orientation for catalysis however non-metal substrate-binding sites are also implicated in the enzyme mechanism. Regeneration of metal-bound hydroxide ion from a metal-bound water molecule requires proton transfer to bulk solvent mediated by a histidine proton shuttle residue. .
Probab=20.42 E-value=55 Score=12.90 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=43.2
Q ss_pred CCCCH--HHHHHHHHHHH-HHHHHH------HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH--HHHHH
Q ss_conf 44101--12378879999-999999------998677889999974477301452001665301133444567--88888
Q gi|254780370|r 114 TARSR--NDQVALDLRLW-IKEKTL------EITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHH--CMAYV 182 (473)
Q Consensus 114 ~grSr--ND~~~t~~rl~-lr~~l~------~l~~~l~~l~~~L~~~A~~~~~t~mpg~TH~Q~A~P~T~g~~--l~~~~ 182 (473)
.|.+| -|..++.+|-. |-+.+. ++...+.++...= ..+...++-+--|-.-+.+++ -+--+ ...|.
T Consensus 9 ~Gq~r~Gvd~GP~~lr~AGL~~~l~dlGWs~dl~~~~~~~g~~~-~~~~~~~~~~~~Gssvm~~~~--K~~~~dlv~~~~ 85 (337)
T TIGR01229 9 LGQGRRGVDKGPSRLREAGLLEKLRDLGWSDDLEYDVEDLGQVP-TAAEREKESPTNGSSVMREAV--KALRYDLVLAAT 85 (337)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCH-HHHCCCCCCCCCHHHHHHHHH--CCCCHHHHHHHH
T ss_conf 78899870214489998638888863377310135611000341-132025667985468999864--466615788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 878620698999874542335653
Q gi|254780370|r 183 EMFGRDISRFFDSIERLDECPLGA 206 (473)
Q Consensus 183 ~~l~rd~~rL~~~~~~~~~~pLG~ 206 (473)
+.|.+...+-.+.-+ .-.-||+
T Consensus 86 e~l~~~v~~v~~~~r--fpL~LGG 107 (337)
T TIGR01229 86 EQLAEKVYKVVEEGR--FPLVLGG 107 (337)
T ss_pred HHHHHHHHHHHHHCC--EEEEECH
T ss_conf 999999999997197--2366454
No 104
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=20.08 E-value=56 Score=12.85 Aligned_cols=51 Identities=10% Similarity=-0.016 Sum_probs=27.4
Q ss_pred HHHHHHHHCCCCHHHCCHHHHHHHHHCCCHHHHHHC-------CHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 999999982989689899999940011326899965-------99999962148999998999999999
Q gi|254780370|r 400 CTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDIL-------KVESSISSRKSFGGTCAAEVLKQVTY 461 (473)
Q Consensus 400 ~lV~~A~~~g~~l~el~~~~~~~~~~~~~~di~~~l-------dp~~~v~~R~s~GGtap~~V~~~i~~ 461 (473)
+.|+++++=|..=-.+ ..||+.. |...++++| ||+.++ -|+.+.+++.+.+
T Consensus 214 e~v~~~IeLGi~KvNV-ATeLKiA---FS~AlK~Yf~enp~AnDPR~Ym-------~~ak~AMk~vv~~ 271 (282)
T TIGR01858 214 EDVRRTIELGICKVNV-ATELKIA---FSGALKAYFLENPEANDPRKYM-------RPAKEAMKKVVEK 271 (282)
T ss_pred HHHHHHHHHCCCEEEC-CHHCCHH---HHHHHHHHHHHCCCCCCCHHHH-------HHHHHHHHHHHHH
T ss_conf 7899998707413411-1110036---8999999997488999832523-------6679999999886
No 105
>COG1429 CobN Cobalamin biosynthesis protein CobN and related Mg-chelatases [Coenzyme metabolism]
Probab=20.07 E-value=56 Score=12.85 Aligned_cols=41 Identities=17% Similarity=0.087 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 441011237887999999999999867788999997447730
Q gi|254780370|r 114 TARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEH 155 (473)
Q Consensus 114 ~grSrND~~~t~~rl~lr~~l~~l~~~l~~l~~~L~~~A~~~ 155 (473)
+||-|-|++.+..-+ .||..-..+.-+.+..+..+.+.+..
T Consensus 940 L~RPRIDV~v~~SG~-fRD~fp~~i~lld~Av~~va~ldE~~ 980 (1388)
T COG1429 940 LGRPRIDVVVRISGL-FRDAFPNQIELLDEAVRLAAALDEPP 980 (1388)
T ss_pred CCCCCEEEEEEEECC-CCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 299841389984011-20014789999999999986078986
Done!