RPSBLAST alignment of GI: 254780370 and protein with PDBid: 1j3u

 Score =  267 bits (683), Expect = 4e-72
 Identities = 76/432 (17%), Positives = 156/432 (36%), Gaps = 47/432 (10%)

Query: 43  DILGSKVHTTML--------------AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR 88
            I G ++H  ++               + G++  E  Q I++    +     +  F+   
Sbjct: 35  PITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDP 94

Query: 89  DLEDIHMNIEARLTSLIGSIA-----------------GKMHTARSRNDQVALDLRLWIK 131
                  +I      +I + A                   ++ ++S ND       + + 
Sbjct: 95  IQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVL 154

Query: 132 EKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISR 191
               ++    K +    + KA+E    I  G THLQ A P+  G    AY  +  RDI R
Sbjct: 155 SLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIER 214

Query: 192 FFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKELGFREPTRNSIDSVSDRDFI 244
             ++   L +  +GA A+         +                   ++ +D+  + D  
Sbjct: 215 IANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCY 274

Query: 245 LECLSHSAICAMHMSRLAEEIILWSTPQFNFVR--LSDAFSTGSSIMPQKRNPDGAELVR 302
            E  S   +C ++MS++A ++ L ++     +   +  A   GSSIMP K NP   E++ 
Sbjct: 275 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMN 334

Query: 303 AKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVN 361
               ++ G  L++ +  +      +         +  ++  +  +  + +   ++ +  N
Sbjct: 335 QVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN 394

Query: 362 KDRLQEAATKSHSTATDLADWLVSH-AGLPFREAHYITGCTVSLAEKNQC----ELAKLP 416
           ++R++E   KS    T +   +    A    REA+        L  K       +L ++ 
Sbjct: 395 EERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEI- 453

Query: 417 LAMLQQISPVIT 428
           L   + I P I 
Sbjct: 454 LNPYEMIHPGIA 465