RPSBLAST alignment of GI: 254780370 and protein with PDBid: 1vdk

>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus HB8} SCOP: a.127.1.1 Length = 466

 Score =  177 bits (449), Expect = 5e-45
 Identities = 60/392 (15%), Positives = 129/392 (32%), Gaps = 37/392 (9%)

Query: 55  AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSL---------- 104
            + G +  E A+ II+  + +     D  F                +  +          
Sbjct: 61  LELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILG 120

Query: 105 ------IGSIAGKMHTARSRNDQVALDLRLWIKEKTL-EITNDLKKLLTILLDKAEEHHN 157
                        ++  +S ND     + + +       +   ++ L+     KA+    
Sbjct: 121 KPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQ 180

Query: 158 TIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID 217
            +  G THL  A P+T G    ++       ++   +  + L    +G  A+        
Sbjct: 181 IVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHP 240

Query: 218 RH------FTAKELGF-REPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST 270
           R       + A+E G       N   +++  D ++  +      A  + ++  ++   ++
Sbjct: 241 RFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLAS 300

Query: 271 PQFNFVRL--SDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK 328
             +  +      A   GSSIMP K NP   E +     R+ G   ++           + 
Sbjct: 301 GPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNV 360

Query: 329 DMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHA 387
                     +++  L   + +  A + + +  N +R++E   K+   AT L        
Sbjct: 361 YKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNK------ 414

Query: 388 GLPFREAHYITGCTVSLAEKNQCELAKLPLAM 419
            + + +A  I    V  A K +  L +  L +
Sbjct: 415 AIGYDKAAEI----VKKALKEKKTLKQAALEL 442