RPSBLAST alignment of GI: 254780370 and protein with PDBid: 1yfm

>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, multi-subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488

 Score =  194 bits (494), Expect = 4e-50
 Identities = 66/384 (17%), Positives = 129/384 (33%), Gaps = 40/384 (10%)

Query: 55  AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKM-- 112
              G +  + ++ I +    + +  +D  F                   +I + A ++  
Sbjct: 86  ESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG 145

Query: 113 --------------HTARSRNDQVALDLRLWIKEKTLEITND-LKKLLTILLDKAEEHHN 157
                         + ++S ND     + +    +        L  L   L  K++E  +
Sbjct: 146 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDH 205

Query: 158 TIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAA-------ALA 210
            +  G THLQ A P+T G     YV+     I R   S++ L     G            
Sbjct: 206 IVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKP 265

Query: 211 GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILW-S 269
           G    I    + +     +   N  ++++  D I+EC       A  + ++A++I    S
Sbjct: 266 GFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGS 325

Query: 270 TPQFNFVRLSD-AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK 328
            P+  +  L       GSSIMP K NP   E +     ++ G   ++           + 
Sbjct: 326 GPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV 385

Query: 329 DMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS------------HST 375
                   + +++  +     +     +E +  N+ R+ E  TKS            +  
Sbjct: 386 FKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDA 445

Query: 376 ATDLADWLVSHAGLPFREAHYITG 399
           A+ +A       G+  +E+    G
Sbjct: 446 ASKVAKNAHKK-GITLKESALELG 468