RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780370|ref|YP_003064783.1| argininosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
(473 letters)
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 447 bits (1151), Expect = e-126
Identities = 196/472 (41%), Positives = 295/472 (62%), Gaps = 5/472 (1%)
Query: 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60
M+ + + + ++WGGRFS S IMEK+N SI +D++L E DI GS + L K GI+
Sbjct: 1 MASEARGD---KLWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGIL 57
Query: 61 SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120
+ E +KI+ GL+ I E G FV + EDIH E RL LIG IAGK+HT RSRND
Sbjct: 58 TKTELEKILSGLEKISEEWSKGVFVVKQSDEDIHTANERRLKELIGDIAGKLHTGRSRND 117
Query: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180
QV DL+L++K I+ L +L+ L+++A + I+PG+THLQ AQP+ + ++
Sbjct: 118 QVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLS 177
Query: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240
+ RD R + +R++ PLG+ ALAG IDR EL F + NS+D++S+
Sbjct: 178 HAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISE 237
Query: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300
RDF++E LS + + +H+S++AE++I++ST +F F+ LSDAFSTG+S+MPQK+NPD EL
Sbjct: 238 RDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLEL 297
Query: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360
+R+K GR+ G L S+L ++KGLP Y+KD+QEDKE VFD ++TL ++ + +I L +
Sbjct: 298 IRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQI 357
Query: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420
+K+ +++A T ATDLA +LV G+PFR+AH +G V LAE + KL L L
Sbjct: 358 SKENMEKALTP-EMLATDLALYLVRK-GVPFRQAHTASGKAVHLAETKGITINKLSLEDL 415
Query: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKK 472
+ ISP +S V + +S+ + GGT + V Q+ R ++ ++
Sbjct: 416 KSISPQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKEQ 467
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus HB8}
Length = 462
Score = 381 bits (978), Expect = e-106
Identities = 218/458 (47%), Positives = 307/458 (67%), Gaps = 3/458 (0%)
Query: 11 NQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIE 70
++ WGGRF P + + N S+ FD+ L+ +D+ ++VH ML G++S+EE + I++
Sbjct: 3 HRTWGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILK 62
Query: 71 GLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWI 130
GL I EI G+F + +LED+HMN+EARLT L+G GK+HTARSRNDQVA DLRL++
Sbjct: 63 GLDRIEEEIEAGTFPWREELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYL 122
Query: 131 KEKTLEITNDLKKLLTILLDKAEEH--HNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRD 188
+ E+ L L +L+ +AE+H ++PG+THLQ AQPV H +AY EM RD
Sbjct: 123 RGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRD 182
Query: 189 ISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECL 248
R D+ ERL+E PLGAAALAGT FPIDRHFTA+ELGF+ P RNS+D+V+ RDF LE L
Sbjct: 183 AGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVL 242
Query: 249 SHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRI 308
S I +H+SR+AEE+IL+ST +F FV + DAF+TGSSIMPQK+NPD EL+RAK GR+
Sbjct: 243 SALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRV 302
Query: 309 NGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEA 368
GA + L ++KGLPLAY+KD+QEDKEP+ DAL T + + ++A++ L ++R+ A
Sbjct: 303 LGAFVGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRA 362
Query: 369 ATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVIT 428
A ++ AT+LAD+L GLPFREAH++ G V + L L L LQ P+
Sbjct: 363 AEGGYTLATELADYLAEK-GLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFA 421
Query: 429 SAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRI 466
+L++E++I R+S+GGT V +++ + +
Sbjct: 422 EDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEV 459
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, aspartase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 370 bits (951), Expect = e-103
Identities = 205/455 (45%), Positives = 298/455 (65%), Gaps = 2/455 (0%)
Query: 13 MWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGL 72
+WGGRF+ + ++ N S+ FD +L EQDI+GS + L G++++EE ++ E L
Sbjct: 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEAL 62
Query: 73 KVIRAEIVDGSF-VFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIK 131
V+ ++ + D EDIH +E +L +G + K+HT RSRNDQVA DL+LW K
Sbjct: 63 NVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCK 122
Query: 132 EKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISR 191
+ E+ ++L + L++ A+ + + +MPG+THLQ AQPVTF H C+AYVEM RD SR
Sbjct: 123 DTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESR 182
Query: 192 FFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHS 251
D+++RLD PLG ALAGT++ IDR A LGF TRNS+DSVSDRD +LE LS +
Sbjct: 183 LQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAA 242
Query: 252 AICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGA 311
AI +H+SR AE++I ++T + FV LSD ++GSS+MPQK+NPD EL+R K GR+ GA
Sbjct: 243 AIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGA 302
Query: 312 LLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATK 371
L ++ +KGLPLAY+KDMQEDKE +FDAL+T + + +++ + V + R QEAA +
Sbjct: 303 LTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQ 362
Query: 372 SHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAV 431
++ AT+LAD+LV+ G+PFREAH+I G V A + L LPL+ LQ+ S VI V
Sbjct: 363 GYANATELADYLVAK-GVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDV 421
Query: 432 YDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRI 466
Y IL ++S + R + GG +V + + + + R+
Sbjct: 422 YPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARL 456
>3no9_A Fumarase C, fumarate hydratase class II; APO, structural genomics,
TB structural genomics consortium, tricarboxylic acid
cycle; 2.48A {Mycobacterium tuberculosis}
Length = 475
Score = 280 bits (717), Expect = 6e-76
Identities = 74/398 (18%), Positives = 127/398 (31%), Gaps = 35/398 (8%)
Query: 55 AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR----DLEDIHMNIEARLTSLIGSIAG 110
+ G+++ E+A II I D F +MN + S+
Sbjct: 67 SDLGLLAPEKADAIIAAAAEIADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKGGV 126
Query: 111 KMHTARSRNDQVALDLRLWIKEKTL-------EITNDLKKLLTILLDKAEEHHNTIMPGF 163
+H N + + + L++L L KA + H + G
Sbjct: 127 TLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGR 186
Query: 164 THLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDR----- 218
THL A PVT G Y I R + RL E +G A+ D
Sbjct: 187 THLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRV 246
Query: 219 ---HFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNF 275
L NS ++ + RD ++E A+ ++++A +I +
Sbjct: 247 VAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTG 306
Query: 276 VRLS--DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQED 333
+ GSSIMP K NP E V ++ G ++ + +
Sbjct: 307 LAEIQLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYIPMM 366
Query: 334 KEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFR 392
+ ++ + L + + I LT N + L+ A S S T L + +
Sbjct: 367 ARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNS------AIGYE 420
Query: 393 EAHYI------TGCTVS-LAEKNQCELAKLPLAMLQQI 423
EA + T+ +L + L +
Sbjct: 421 EAAAVAKQALKERKTIRQTVIDRGLIGDRLSIEDLDRR 458
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 271 bits (693), Expect = 3e-73
Identities = 75/404 (18%), Positives = 138/404 (34%), Gaps = 45/404 (11%)
Query: 55 AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF----SRDLEDIHMNIEARLTSLIGSIAG 110
K + + I+ I ++ FV +MN + + G
Sbjct: 81 YKLRQLPEPKYAAIVAACDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRALEHLG 140
Query: 111 KM-------------HTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHN 157
+ + ++S ND +RL + ++ L +L+ K E
Sbjct: 141 RPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFAT 200
Query: 158 TIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID 217
I G T LQ A P+T G A+ D +R + E LG A+
Sbjct: 201 VIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINASH 260
Query: 218 RHFTAKELGFRE-------PTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST 270
+ + + T N +++ D + A+ +S++A ++ L S+
Sbjct: 261 AYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSS 320
Query: 271 PQFNFVRLSD--AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK 328
+ + A GSSIMP K NP E V ++ G L++ + L +
Sbjct: 321 GPRSGLGEIRLPAVQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNA 380
Query: 329 DMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHA 387
+ ++ L + ++ ++ + N +R + A +S S AT L
Sbjct: 381 FEPLIVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPV----- 435
Query: 388 GLPFREAHYI------TGCTVS-LAEKNQCELAKL-----PLAM 419
+ + A I +G TV +A + + L PL M
Sbjct: 436 -VGYARAAEIAKQALASGQTVMEVAISKGLDASALTIMLDPLRM 478
>1j3u_A Aspartase; multi-domains, lyase; 2.50A {Bacillus SP} SCOP:
a.127.1.1
Length = 468
Score = 267 bits (683), Expect = 4e-72
Identities = 76/432 (17%), Positives = 156/432 (36%), Gaps = 47/432 (10%)
Query: 43 DILGSKVHTTML--------------AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSR 88
I G ++H ++ + G++ E Q I++ + + F+
Sbjct: 35 PITGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKAADEVIEGKWNDQFIVDP 94
Query: 89 DLEDIHMNIEARLTSLIGSIA-----------------GKMHTARSRNDQVALDLRLWIK 131
+I +I + A ++ ++S ND + +
Sbjct: 95 IQGGAGTSINMNANEVIANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVL 154
Query: 132 EKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISR 191
++ K + + KA+E I G THLQ A P+ G AY + RDI R
Sbjct: 155 SLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIER 214
Query: 192 FFDSIERLDECPLGAAALAGTSFPIDRH-------FTAKELGFREPTRNSIDSVSDRDFI 244
++ L + +GA A+ + ++ +D+ + D
Sbjct: 215 IANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCY 274
Query: 245 LECLSHSAICAMHMSRLAEEIILWSTPQFNFVR--LSDAFSTGSSIMPQKRNPDGAELVR 302
E S +C ++MS++A ++ L ++ + + A GSSIMP K NP E++
Sbjct: 275 TEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPGKVNPVMPEVMN 334
Query: 303 AKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVN 361
++ G L++ + + + + ++ + + + + ++ + N
Sbjct: 335 QVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKAN 394
Query: 362 KDRLQEAATKSHSTATDLADWLVSH-AGLPFREAHYITGCTVSLAEKNQC----ELAKLP 416
++R++E KS T + + A REA+ L K +L ++
Sbjct: 395 EERMKEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESIRELCIKYGVLTEEQLNEI- 453
Query: 417 LAMLQQISPVIT 428
L + I P I
Sbjct: 454 LNPYEMIHPGIA 465
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 266 bits (680), Expect = 1e-71
Identities = 77/464 (16%), Positives = 160/464 (34%), Gaps = 21/464 (4%)
Query: 11 NQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIE 70
+Q++ F + I D+ L + A+ G+I A I
Sbjct: 5 SQLYASLFYQ-------RDVTEIFSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQR 57
Query: 71 GLKVIRAEIVDGSFVF-SRDLEDIHMNIEARLTSLIGSI----AGKMHTARSRNDQVALD 125
K +I + + +I + +LT+++ A +H + D +
Sbjct: 58 AAKTAIDKIDFDALATATGLAGNIAIPFVKQLTAIVKDADEDAARYVHWGATSQDILDTA 117
Query: 126 LRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMF 185
L ++ + N +++ L +A+ + + +M G T LQ A P+T GH + F
Sbjct: 118 CILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAF 177
Query: 186 GRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGF-REPTRNSIDSVSDRDFI 244
RD+ R R+ LG A + S + + + + +RD I
Sbjct: 178 KRDLDRINAIKARVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACTWHGERDRI 237
Query: 245 LECLSHSAICAMHMSRLAEEII-LWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRA 303
+E S I ++ ++A + + T + GSS MP KRNP A V A
Sbjct: 238 VEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLA 297
Query: 304 KTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKD 363
R+ + S+ M + + + + + +++ + VN +
Sbjct: 298 AANRVPALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGMEVNAE 357
Query: 364 RLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQI 423
+ + +H A + + AH++ A Q L + ++ + ++
Sbjct: 358 NMHQNIECTHGLIMAEAVMMALAPHMGRLNAHHVVEAACKTAVAEQKHLKDI-ISQVDEV 416
Query: 424 SPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQ 467
+ D I +S+ G ++ + + +
Sbjct: 417 KQYFNPSQLD------EIFKPESYLGNIQDQIDAVLQEAKGEAK 454
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli B} SCOP: a.127.1.1
Length = 478
Score = 261 bits (667), Expect = 3e-70
Identities = 68/421 (16%), Positives = 136/421 (32%), Gaps = 39/421 (9%)
Query: 55 AKQGIISSEEAQKIIEGLK-VIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIA---- 109
+ I A II V+ F ++ ++ +I
Sbjct: 63 KELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELM 122
Query: 110 -------------GKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHH 156
++ +S ND R+ + +++ + + +L KA E
Sbjct: 123 GHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQ 182
Query: 157 NTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPI 216
+ + G T LQ A P+T G A+ + ++ + E L E LGA A+
Sbjct: 183 DILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTP 242
Query: 217 DRHFTAKELGFREPT-------RNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWS 269
+ E T + I++ SD + A+ MS++ ++ L S
Sbjct: 243 KEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLS 302
Query: 270 TPQFNFVRLSD--AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYS 327
+ + + GSSIMP K NP E+V ++ G ++ + L +
Sbjct: 303 SGPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLN 362
Query: 328 KDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSH 386
+ +F+++ L + I +T NK+ + S T L
Sbjct: 363 VMEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLN------ 416
Query: 387 AGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKS 446
PF H + + + ++ L ++ ++ + + K
Sbjct: 417 ---PFIGHH-NGDIVGKICAETGKSVREVVLE-RGLLTEAELDDIFSVQNLMHPAYKAKR 471
Query: 447 F 447
+
Sbjct: 472 Y 472
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, cytoplasm, lyase, tricarboxylic acid cycle;
2.40A {Rickettsia prowazekii}
Length = 482
Score = 249 bits (638), Expect = 8e-67
Identities = 67/385 (17%), Positives = 129/385 (33%), Gaps = 41/385 (10%)
Query: 55 AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF----SRDLEDIHMNIEARLTSLIGSIAG 110
+ G + + A I + + I A + +F + +MN+ + S+
Sbjct: 81 YEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELT 140
Query: 111 -------------KMHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLTILLDKAEEHH 156
++ +S ND + + T + + L LLT L DK+++
Sbjct: 141 GKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWD 200
Query: 157 NTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPI 216
I G THLQ A P+T Y+ + R D+++++ G A+
Sbjct: 201 KIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSK 260
Query: 217 DRHFTAKELGFRE-------PTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWS 269
E N +S++ D ++E A+ + ++A +I L
Sbjct: 261 IGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLG 320
Query: 270 TPQFNFVRLSD--AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYS 327
+ + GSSIMP K NP E + ++ G +++ L +
Sbjct: 321 SGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELN 380
Query: 328 KDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS------------HS 374
+ ++E L + + ++ L N R+ KS +
Sbjct: 381 VFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYD 440
Query: 375 TATDLADWLVSHAGLPFREAHYITG 399
A +A G+ +EA
Sbjct: 441 NAAKIAKEAH-KYGITLKEAAKKLN 464
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumarate hydratase; 1.95A {Escherichia coli}
SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A*
1fup_A* 2fus_A*
Length = 467
Score = 228 bits (582), Expect = 2e-60
Identities = 67/428 (15%), Positives = 146/428 (34%), Gaps = 44/428 (10%)
Query: 48 KVHTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVF--------SRDLEDIHMNIEA 99
+ + G++S E+A I + + A D F ++ +++ +
Sbjct: 53 RAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQSNMNMNEVLAN 112
Query: 100 RLTSLIGSIAGK---------MHTARSRNDQVALDLRLWIKEKTLEIT-NDLKKLLTILL 149
R + L+G + G ++ ++S ND + + + LK L L
Sbjct: 113 RASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLN 172
Query: 150 DKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAAL 209
+K+ + + G T+LQ A P+T G +V M ++ S+ + E LG A+
Sbjct: 173 EKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHVAELALGGTAV 232
Query: 210 AGTSFPIDRHFTAKELGFRE-------PTRNSIDSVSDRDFILECLSHSAICAMHMSRLA 262
+ N ++++ D +++ A + ++A
Sbjct: 233 GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIA 292
Query: 263 EEIILWSTPQFNFVR--LSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMK 320
++ ++ + GSSIMP K NP E + ++ G +++
Sbjct: 293 NDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGA 352
Query: 321 GLPLAYSKDMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDL 379
+ ++ L + + + + N++R+ + +S T L
Sbjct: 353 SGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTAL 412
Query: 380 ADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYD-ILKVE 438
+ + +A I A K L L ++ A +D ++ E
Sbjct: 413 NTH------IGYDKAAEI----AKKAHKE-----GLTLKAAALALGYLSEAEFDSWVRPE 457
Query: 439 SSISSRKS 446
+ S K+
Sbjct: 458 QMVGSMKA 465
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis; 2.00A {Bacillus
anthracis} PDB: 1f1o_A
Length = 444
Score = 219 bits (559), Expect = 1e-57
Identities = 84/401 (20%), Positives = 148/401 (36%), Gaps = 13/401 (3%)
Query: 50 HTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSL--IGS 107
A+ G I E+ +KI E I + D+ + ++ +G
Sbjct: 39 ACEAWAELGDIPKEDVKKIREHASFDIDRIYEIEKETRHDV----VAFTRAVSETPALGE 94
Query: 108 IAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167
+H + D V L +K+ I DL+ ++IL +KA+EH TIM G TH
Sbjct: 95 ERKWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGV 154
Query: 168 TAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELG- 226
A+P TFG + E R++ RF + + L A GT ID
Sbjct: 155 HAEPTTFGLKLGLWYEEMKRNVERFKQAANTVRVGKLSGAV--GTYANIDPFVEKYVCEN 212
Query: 227 FREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILW-STPQFNFVRLSDAFSTG 285
RD +S A+ A + ++A EI + G
Sbjct: 213 LGLEAAPISTQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEAFAKGQKG 272
Query: 286 SSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQ 345
SS MP KRNP G+E + I G +++ + ++ + DA L
Sbjct: 273 SSAMPHKRNPIGSENMTGLARVIRGYMMTAYENVPLWHERDISHSSAERVILPDATIALN 332
Query: 346 IIILAISAMIEDLTVNKDRLQEAATKSHS--TATDLADWLVSHAGLPFREAHYITGCTVS 403
++ ++++LTV + ++ T+++ + + L+ G+ EA+ I
Sbjct: 333 YMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDK-GMVREEAYDIVQPKAM 391
Query: 404 LAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSR 444
A + Q + +L A + S + + + E +
Sbjct: 392 EAWETQVQFKELVEADERITSKLTQEEINECFNYEHHMQHV 432
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
multi-subunit active site; 2.60A {Saccharomyces
cerevisiae} SCOP: a.127.1.1
Length = 488
Score = 194 bits (494), Expect = 4e-50
Identities = 66/384 (17%), Positives = 129/384 (33%), Gaps = 40/384 (10%)
Query: 55 AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKM-- 112
G + + ++ I + + + +D F +I + A ++
Sbjct: 86 ESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG 145
Query: 113 --------------HTARSRNDQVALDLRLWIKEKTLEITND-LKKLLTILLDKAEEHHN 157
+ ++S ND + + + L L L K++E +
Sbjct: 146 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDH 205
Query: 158 TIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAA-------ALA 210
+ G THLQ A P+T G YV+ I R S++ L G
Sbjct: 206 IVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKP 265
Query: 211 GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILW-S 269
G I + + + N ++++ D I+EC A + ++A++I S
Sbjct: 266 GFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGS 325
Query: 270 TPQFNFVRLSD-AFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK 328
P+ + L GSSIMP K NP E + ++ G ++ +
Sbjct: 326 GPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV 385
Query: 329 DMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKS------------HST 375
+ +++ + + +E + N+ R+ E TKS +
Sbjct: 386 FKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDA 445
Query: 376 ATDLADWLVSHAGLPFREAHYITG 399
A+ +A G+ +E+ G
Sbjct: 446 ASKVAKNAHKK-GITLKESALELG 468
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 192 bits (488), Expect = 1e-49
Identities = 72/398 (18%), Positives = 146/398 (36%), Gaps = 15/398 (3%)
Query: 50 HTTMLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIA 109
T + G+I ++I K+ + D+ +E + S+IG +
Sbjct: 29 VTRAYEELGMIPKGVTERIRNNAKIDVELFKKIE---EKTNHDVVAFVEG-IGSMIGEDS 84
Query: 110 GKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTA 169
H + +D + L + E + LK+ +L + A + +T G TH A
Sbjct: 85 RFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHA 144
Query: 170 QPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFRE 229
+P +FG + + R++ R +IE + + A + P + A +
Sbjct: 145 EPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLK 204
Query: 230 PTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRL-SDAFSTGSSI 288
P S V RD LS AI A + R+A EI + V GSS
Sbjct: 205 PEPVS-TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSA 263
Query: 289 MPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIII 348
MP K+NP E + + + + ++ + L + +D+ + + Q +
Sbjct: 264 MPHKKNPITCERLTGLSRMMRA---YVDPSLENIALWHERDISHSSVERYVFPDATQTLY 320
Query: 349 LAIS---AMIEDLTVNKDRLQEAATKSH--STATDLADWLVSHAGLPFREAHYITGCTVS 403
I ++ ++ VN++R+++ + + + L+ GL +EA+ I
Sbjct: 321 YMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEK-GLTRKEAYDIVQRNAL 379
Query: 404 LAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSI 441
++ + L + V + ++ + +
Sbjct: 380 KTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYL 417
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, acetylation, alternative initiation,
anti-oncogene, cell cycle, cytoplasm; 1.95A {Homo
sapiens}
Length = 490
Score = 189 bits (482), Expect = 9e-49
Identities = 57/355 (16%), Positives = 118/355 (33%), Gaps = 34/355 (9%)
Query: 60 ISSEEAQKIIEGLKVIRAEIVDGSFVF----SRDLEDIHMNIEARLTSLIGSIAGK---- 111
+ + A I++ + ++ F + +MN+ +++ + G
Sbjct: 92 LDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAIEMLGGELGS 151
Query: 112 -------MHTARSRNDQVALDLRLWI------KEKTLEITNDLKKLLTILLDKAEEHHNT 158
H +S++ + I E L L L K++E
Sbjct: 152 KIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHD---ALDAKSKEFAQI 208
Query: 159 IMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDR 218
I G TH Q A P+T G YV+ ++R ++ R+ E G A+
Sbjct: 209 IKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIG 268
Query: 219 HF------TAKELGF-REPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTP 271
A G N ++++ D ++E A + ++A +I +
Sbjct: 269 FAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSG 328
Query: 272 QFNFVR--LSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKD 329
+ + + GSSIMP K NP E + ++ G +++ +
Sbjct: 329 PRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVF 388
Query: 330 MQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWL 383
+ V + L ++ + + + N +R+ + +S T L +
Sbjct: 389 KPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHI 443
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, lyase; 1.80A {Thermus thermophilus
HB8} SCOP: a.127.1.1
Length = 466
Score = 177 bits (449), Expect = 5e-45
Identities = 60/392 (15%), Positives = 129/392 (32%), Gaps = 37/392 (9%)
Query: 55 AKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSL---------- 104
+ G + E A+ II+ + + D F + +
Sbjct: 61 LELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSGTQTNMNVNEVIANRASEILG 120
Query: 105 ------IGSIAGKMHTARSRNDQVALDLRLWIKEKTL-EITNDLKKLLTILLDKAEEHHN 157
++ +S ND + + + + ++ L+ KA+
Sbjct: 121 KPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQ 180
Query: 158 TIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPID 217
+ G THL A P+T G ++ ++ + + L +G A+
Sbjct: 181 IVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHP 240
Query: 218 RH------FTAKELGF-REPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWST 270
R + A+E G N +++ D ++ + A + ++ ++ ++
Sbjct: 241 RFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLAS 300
Query: 271 PQFNFVRL--SDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK 328
+ + A GSSIMP K NP E + R+ G ++ +
Sbjct: 301 GPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNV 360
Query: 329 DMQEDKEPVFDALETLQIIILAISA-MIEDLTVNKDRLQEAATKSHSTATDLADWLVSHA 387
+++ L + + A + + + N +R++E K+ AT L
Sbjct: 361 YKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNK------ 414
Query: 388 GLPFREAHYITGCTVSLAEKNQCELAKLPLAM 419
+ + +A I V A K + L + L +
Sbjct: 415 AIGYDKAAEI----VKKALKEKKTLKQAALEL 442
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 168 bits (426), Expect = 2e-42
Identities = 96/438 (21%), Positives = 167/438 (38%), Gaps = 20/438 (4%)
Query: 11 NQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIE 70
+ ++G F+ M ++ + F + E ++ ++ A+ GII + A I
Sbjct: 5 SPLYGRSFADDK---MRELFSAQSFISRCVETEVALAR----AQARLGIIPEDAAAGITA 57
Query: 71 GLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWI 130
+ E+ I +E L++ G +H + D + L I
Sbjct: 58 AARTFAPEMERLRDDTEIVGYPILPLVEQ-LSAHAGEAGKYLHWGATTQDIMDTATVLQI 116
Query: 131 KEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDIS 190
++ I+ ++ + L A H +T M G THLQ A PVTFG+ ++ F R +
Sbjct: 117 RDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAA 176
Query: 191 RFFDSIERLDECP----LGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILE 246
R + R+ G A GT + A+EL P+ I S RD + E
Sbjct: 177 RLEEISPRVLVVEFSGASGTLASLGTRGLDVQRELARELNLGVPS---ITWHSARDAVAE 233
Query: 247 CLSHSAICAMHMSRLAEEIILWSTPQFNFVRL-SDAFSTGSSIMPQKRNPDGAELVRAKT 305
+ A+ + + +LA +I + T + V SS MPQK+NP EL+ A
Sbjct: 234 TVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGA 293
Query: 306 GRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRL 365
+ S+L M + + V + I+ M+ L V DR+
Sbjct: 294 RIVRNHATSMLDAMIHDFERATGPWHLEWSAVPEGFAVASGILYQAEFMLGGLQVFPDRM 353
Query: 366 QEAATKSHS--TATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQI 423
+E S A + L H +EAH I A +++ L ++ M +
Sbjct: 354 RENLDHSRGLIVAEAVMMALAPH--TGRKEAHDIVYLGCRRAVEDKTGLFEVLRTMPEVA 411
Query: 424 SPVITSAVYDILKVESSI 441
P+ A+ D+ + +
Sbjct: 412 KPLGEEALRDLTDPRNYL 429
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular evolution; HET: CIT;
2.60A {Pseudomonas putida KT2440} SCOP: a.127.1.1
Length = 450
Score = 161 bits (408), Expect = 3e-40
Identities = 85/461 (18%), Positives = 155/461 (33%), Gaps = 25/461 (5%)
Query: 11 NQMWGGRFSSSPSWIMEKINVSIDF-DKKLFEQDILGSKVHTTMLAKQGIISSEEAQKII 69
NQ++ F++ M +I F D+ + + A G++ I
Sbjct: 3 NQLFDAYFTAPA---MREI-----FSDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIE 54
Query: 70 EGLKVIR---AEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDL 126
+ R + + + + + + + +H + D + L
Sbjct: 55 AACQAERYDTGALANAIATAGNSAIPLVKALGKVIATGVPEAERYVHLGATSQDAMDTGL 114
Query: 127 RLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFG 186
L +++ I DL KL L +A +H +T + G T LQ A PVT G +
Sbjct: 115 VLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALT 174
Query: 187 RDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREP-TRNSIDSVSDRDFIL 245
R R + RL G A+ + + A+ L + T + RD ++
Sbjct: 175 RHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLV 234
Query: 246 ECLSHSAICAMHMSRLAEEIILWSTPQFNFV-RLSDAFSTGSSIMPQKRNPDGAELVRAK 304
E S + A + + +I L + V S GSS MP KRNP GA ++
Sbjct: 235 EFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGA 294
Query: 305 TGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDR 364
R+ G L +L M + E + D + + + E + V+ R
Sbjct: 295 ATRVPGLLSTLFAAMPQEHERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAAR 354
Query: 365 LQEAATKSHS--TATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAMLQQ 422
++ + A ++ L L AH++ A Q L + Q
Sbjct: 355 MRRNLDLTQGLVLAEAVSIVLAQR--LGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQV 412
Query: 423 ISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWR 463
+ + + +L + G V + V+ +
Sbjct: 413 SAELSGEELDRLLDPA-------HYLGQARVWVARAVSEHQ 446
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate, cycloisomerase; 2.20A
{Agrobacterium tumefaciens} PDB: 2fen_A
Length = 359
Score = 155 bits (392), Expect = 2e-38
Identities = 66/355 (18%), Positives = 122/355 (34%), Gaps = 13/355 (3%)
Query: 11 NQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIE 70
+ G F S I+E + D D + A+ I + +EA+ I+
Sbjct: 8 HPFLSGLFGDSE--IIELFSAKADIDAMI-----RFETALAQAEAEASIFADDEAEAIVS 60
Query: 71 GLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWI 130
GL A++ ++D + I ++ G A K+H + D + L L +
Sbjct: 61 GLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHFGATSQDVIDTSLMLRL 120
Query: 131 KEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDIS 190
K I L L+ L D A + + G+T +Q A +T ++ R +
Sbjct: 121 KMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLL 180
Query: 191 RFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFILECLSH 250
R + G AA + +L R + + RD I E +
Sbjct: 181 RLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRPQWHNQRDGIAEFANL 240
Query: 251 SAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRING 310
++ + + ++I L + + GSS MP K+NP AE +
Sbjct: 241 LSLVTGTLGKFGQDIALMAEIGSEI---RLSGGGGSSAMPHKQNPVNAETLVTLARFNAV 297
Query: 311 ALLSLLTIMKG---LPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTVNK 362
+ +L + A + A T ++ ++A I+ L ++
Sbjct: 298 QISALHQSLVQEQERSGAGWMLEWLTLPQMVTATGTSLLVAERLAAQIDRLGADE 352
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 146 bits (370), Expect = 8e-36
Identities = 58/431 (13%), Positives = 130/431 (30%), Gaps = 31/431 (7%)
Query: 54 LAKQGI--ISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIH--MNIEARLTSLIGSIA 109
+ G+ ++ + ++ V + S + + H M L + A
Sbjct: 45 EKELGLKQVTQDAIDEMKSNRDVFDWPFIR-----SEERKLKHDVMAHNHAFGKLCPTAA 99
Query: 110 GKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTA 169
G +H + + ++ I ++ L + ++ + G TH QTA
Sbjct: 100 GIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTA 159
Query: 170 QPVTFGHHCMAYVEMFGRDISRFFDSIER----LDECPLGAAALAGTSFPIDRHFTAKEL 225
VT G + + + + ++ + G T F D
Sbjct: 160 SLVTVGKRGVLWAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALD 219
Query: 226 GF------REPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLS 279
R + + ++ ++ +I +
Sbjct: 220 ELVTKKANFSNRFLITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAFGELLEPFE 279
Query: 280 DAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVF- 338
GSS MP K+NP +E A + ++ A LTI+ L + D + +
Sbjct: 280 K-DQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRMLIP 338
Query: 339 DALETLQIIILAISAMIEDLTVNKDRLQE--AATKSHSTATDLADWLVSHAGLPFREAHY 396
D L T + ++ + + E L+V D +++ + L G+ ++AH
Sbjct: 339 DVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEE-GVDRQQAHA 397
Query: 397 ITG-CTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEV 455
+ + + + + M + V ++ + +F G C ++
Sbjct: 398 VIRKTALEAKQLQATQKVDIRQTMADPFFDSVRDRVVGLVN------NPINFTGRCVSQT 451
Query: 456 LKQVTYWRNRI 466
+
Sbjct: 452 ESFIAKELKPT 462
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 133 bits (334), Expect = 9e-32
Identities = 63/367 (17%), Positives = 126/367 (34%), Gaps = 16/367 (4%)
Query: 53 MLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGK- 111
L + G+ +K+ + V V+ + E H +I + + L +
Sbjct: 38 ALEELGVAERGCCEKVNKAS-------VSADEVYRLERETGH-DILSLVLLLEQKSGCRY 89
Query: 112 MHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQP 171
+H + ND + L I+ + + + L A ++ M G TH Q A+P
Sbjct: 90 VHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEP 149
Query: 172 VTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPT 231
+T G Y + + E + GA + + +
Sbjct: 150 ITLGFKFANYYYELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLP 209
Query: 232 RNSI-DSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMP 290
+ I V+ R+ S A+ A RLA EI S P+ V GSS MP
Sbjct: 210 HHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEV---VEGGGGSSAMP 266
Query: 291 QKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILA 350
K NP +E + + + + + ++ + +AL L I+ +
Sbjct: 267 HKANPTASERIVSLARYVRALTHVAFENVALWHERDLTNSANERVWIPEALLALDEILTS 326
Query: 351 ISAMIEDLTVNKDRLQE--AATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKN 408
+++++ ++++R+ E + + ++ G EA+ +L +
Sbjct: 327 ALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKE-GASRAEAYKKAKEVKALTFEY 385
Query: 409 QCELAKL 415
Q +
Sbjct: 386 QKWPVER 392
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purine biosynthesis, alternative splicing;
HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Length = 503
Score = 130 bits (326), Expect = 1e-30
Identities = 69/418 (16%), Positives = 132/418 (31%), Gaps = 26/418 (6%)
Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIH--MNIEARLTSLIGSIAGK 111
G+ ++E + ++ E +D + H M AG
Sbjct: 72 EQTLGLPITDEQIREMKS----NLENIDFKMAAEEEKRLRHDVMAHVHTFGHCCPKAAGI 127
Query: 112 MHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQP 171
+H + + ++ + L ++++ L D A+E + GFTH Q AQ
Sbjct: 128 IHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQL 187
Query: 172 VTFGHHCMAYVEMFGRDISRFFDSIERLD----ECPLGAAALAGTSFPIDRHFTAK---- 223
T G C +++ D+ + L + G A F D H +
Sbjct: 188 TTVGKRCCLWIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKM 247
Query: 224 --ELGFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDA 281
E + R +E LS A + ++ +I L + + +
Sbjct: 248 VTEKAGFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEE-PFEK 306
Query: 282 FSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSK-DMQEDKEPVFDA 340
GSS MP KRNP +E + + ++ L + D + + +A
Sbjct: 307 QQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDDSANRRICLAEA 366
Query: 341 LETLQIIILAISAMIEDLTVNKDRLQE--AATKSHSTATDLADWLVSHAGLPFREAH-YI 397
T I+ + + E L V ++ ++ +V G ++ H I
Sbjct: 367 FLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKA-GGSRQDCHEKI 425
Query: 398 TGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILKVESSISSRKSFGGTCAAEV 455
+ A + E L Q+ + + + SF G + +V
Sbjct: 426 RVLSQQAASVVKQEGGDNDLIERIQVDAYFSPIHSQLDH----LLDPSSFTGRASQQV 479
>3bhg_A Adenylosuccinate lyase; structural genomics, PSI-2, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Length = 459
Score = 129 bits (325), Expect = 1e-30
Identities = 54/380 (14%), Positives = 111/380 (29%), Gaps = 20/380 (5%)
Query: 53 MLAKQGIISSEEA--QKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAG 110
LA I A K + L + + + ++ E + + +
Sbjct: 49 SLAANDTIPEVPALDNKARKFLSDLISNFNESEAEKIKEFEKQTNHDVKAVEYYLQDKFQ 108
Query: 111 K----------MHTARSRNDQVALDLRLWIKEKTLEITNDLKKLL-TILLDKAEEHHNTI 159
+ +H A + D L L IK+ ++ + + ++H +
Sbjct: 109 ENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVA 168
Query: 160 MPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH 219
M TH Q A P T G + +V R + + + A + +
Sbjct: 169 MLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVD 228
Query: 220 FTAKELGFREPTRNSIDSVSDR----DFILECLSHSAICAMHMSRLAEEIILWSTPQFNF 275
+ F S ++ + + D I E + ++I + + +
Sbjct: 229 WRKHCANFVTSLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFK 288
Query: 276 VRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKE 335
+ A GSS MP K NP E G N + + +
Sbjct: 289 QKT-IAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKLTQSRMQRDLSDSTVLR 347
Query: 336 PVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAH 395
+ A I +++ + L +NK LQ+ +++ + ++ A+
Sbjct: 348 NLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVM--RRYNEPNAY 405
Query: 396 YITGCTVSLAEKNQCELAKL 415
+ L K
Sbjct: 406 EQLKELTRGQMIDAENLKKF 425
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural genomics
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 127 bits (320), Expect = 5e-30
Identities = 57/403 (14%), Positives = 118/403 (29%), Gaps = 27/403 (6%)
Query: 53 MLAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDI------------HMNIEAR 100
L ++ + + +E L I I D + +E+ ++
Sbjct: 45 FLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEETNHDVKAVEYFVKEKLKNS 104
Query: 101 LTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTLEIT-NDLKKLLTILLDKAEEHHNTI 159
+ I +H + D + +K ++ L+K++ L D A E+ +
Sbjct: 105 KREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVP 164
Query: 160 MPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRH 219
+ TH Q A TFG + + A D
Sbjct: 165 LLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVKVCAKFNGAVGNFNAHKVASKDTD 224
Query: 220 FTAKELGFR-----EPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFN 274
+ F + D D+I E A + L +I L+ +
Sbjct: 225 WVNTIGLFLKKHFNLTYSIYCTQIQDHDYICELCDGLARANGTLIDLCVDIWLYISNNLL 284
Query: 275 FVRLSDAFSTGSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDK 334
+++ + SS MP K NP E N + + L
Sbjct: 285 KLKVKEKEVG-SSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKLPTSRLQRDLSDSTVL 343
Query: 335 EPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHST-ATDLADWLVSHAGLPFRE 393
+ +L I ++ + + +++ L+E ++ ST A + + + +
Sbjct: 344 RNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVM---KRHNYVD 400
Query: 394 AHYITGCTVSLAEKNQCELAKLPLAMLQQISPVITSAVYDILK 436
A+ +Q + + ++ + V D L
Sbjct: 401 AYEELKQFTRGKVIDQKIMQEF----IKTKCAFLPQDVVDQLL 439
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 124 bits (312), Expect = 4e-29
Identities = 61/400 (15%), Positives = 119/400 (29%), Gaps = 31/400 (7%)
Query: 16 GRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIIS--SEEAQKIIEGLK 73
GR+ S + + + L + + LA I A I L
Sbjct: 14 GRYGDKVSALRGIFS-----EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLD 68
Query: 74 VIRAEIVDGSFVFSRDLEDI----------HMNIEARLTSLIGSIAGKMHTARSRNDQVA 123
I A + + +E + + + +++ +H A + D
Sbjct: 69 AIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINN 128
Query: 124 LDLRLWIKEKTLEITNDL-KKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYV 182
L L +K E+ ++L+ L D A ++ + + T Q A P T G
Sbjct: 129 LSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVA 188
Query: 183 EMFGRDISRF--FDSIERLDECPLGAAALAGTSFPIDRHFTAKEL-----GFREPTRNSI 235
R + + + +++ A +D H ++E P I
Sbjct: 189 YRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQI 248
Query: 236 DSVSDRDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNP 295
+ + +C++ + R I + + A GSS MP K NP
Sbjct: 249 EPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKT----IAGEIGSSTMPHKVNP 304
Query: 296 DGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMI 355
E G N L L + + + + I + +
Sbjct: 305 IDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGV 364
Query: 356 EDLTVNKDRLQEAATKSHSTATDLADWLVSHAGLPFREAH 395
L VN+D L + + + ++ G+ + +
Sbjct: 365 SKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIE--KPY 402
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 58.4 bits (141), Expect = 3e-09
Identities = 52/346 (15%), Positives = 101/346 (29%), Gaps = 97/346 (28%)
Query: 163 FTH--LQTAQPVTFGHHCMAYV--EMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDR 218
+H L+ V +A E F + + + DE P A L G F +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDE-PTTPAELVG-KF-LG- 66
Query: 219 HFTAKELGFREPTRNSIDSVSD---RDFILECLSHSAICAMHM--SRLAEEIILWSTPQF 273
+ + + D V + +F L + I H ++L +E
Sbjct: 67 -YVSSLV--EPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKTK 120
Query: 274 NFVRLSDAFSTGSSIM--PQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQ 331
++ + T + P + + A G L+ I G Q
Sbjct: 121 ELIK---NYITARIMAKRPFDKKSNSALFRAVGEGNA-----QLVAIFGG---------Q 163
Query: 332 EDKEPVFDALETL--------QIIILAISAMIEDLTVNKDRLQEAATKSHSTATDLADWL 383
+ + F+ L L +I + + +L R A K + ++ +WL
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI----RTTLDAEKVFTQGLNILEWL 219
Query: 384 ----------------VSHAGLP----FREAHYITGCTVSLAEKNQCELAKLPLAMLQQI 423
+S P + AHY+ + L P + +
Sbjct: 220 ENPSNTPDKDYLLSIPIS---CPLIGVIQLAHYVVTAKL---------LGFTPGELRSYL 267
Query: 424 SP-------VITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYW 462
++T+ I + S +SF + + V ++
Sbjct: 268 KGATGHSQGLVTAVA--I----AETDSWESF-FVSVRKAIT-VLFF 305
Score = 54.6 bits (131), Expect = 5e-08
Identities = 76/481 (15%), Positives = 133/481 (27%), Gaps = 217/481 (45%)
Query: 40 FEQDIL-GSKVH-----------TTMLAKQGII---------SSEEAQKIIE-GLKVIRA 77
FE L G+ +H TT++ + +I + K L RA
Sbjct: 91 FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL--FRA 148
Query: 78 EIVDGSF----VFS---------RDLEDIHMNIEARLTSLIGSIAGKMHTAR-SRNDQVA 123
+ +G+ +F +L D++ + LI A + R A
Sbjct: 149 -VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSA--ETLSELIRTTLDA 205
Query: 124 -------LDLRLWIKEKTLEITNDLKKLLTI--------LLDKAEEHHNTIM-------P 161
L++ W++ T D LL+I ++ A H + P
Sbjct: 206 EKVFTQGLNILEWLE--NPSNTPDKDYLLSIPISCPLIGVIQLA---HYVVTAKLLGFTP 260
Query: 162 G-F-THLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLG---AAALAGT---- 212
G ++L+ A T GH S+ G A A+A T
Sbjct: 261 GELRSYLKGA---T-GH-------------SQ-------------GLVTAVAIAETDSWE 290
Query: 213 SFPIDRHF-TAKEL----GFRE----PTRNSI------DSV-----------SDRDFILE 246
SF A + G R P S+ DS+ S +
Sbjct: 291 SF--FVSVRKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISN---- 343
Query: 247 CLSHSAICAMHM----SRLAEE----IILWSTPQFNFV-------------RLSDA-FST 284
L+ + ++ S L I L + + N V L A +
Sbjct: 344 -LTQEQV-QDYVNKTNSHLPAGKQVEISLVNGAK-NLVVSGPPQSLYGLNLTLRKAKAPS 400
Query: 285 G---SSIMP-QKRNP-------------------DGAELVRAKTGRINGALLSLLTIMKG 321
G S I P +R ++L+ + N ++
Sbjct: 401 GLDQSRI-PFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN------VSF-NA 452
Query: 322 LPLA---YS----KDMQEDKEPVFDALETLQIIILAISAMIEDLTVNKDRLQEAATKSHS 374
+ Y D++ + + + + +I V E T+ +
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSISERI---------VDCIIRL-PVK----WETTTQFKA 498
Query: 375 T 375
T
Sbjct: 499 T 499
Score = 33.4 bits (76), Expect = 0.12
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 33/113 (29%)
Query: 3 KKIK-SNEVNQMWGGR--FSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGI 59
+K K + ++Q R FS K+ S F L + S H+ +L
Sbjct: 394 RKAKAPSGLDQ---SRIPFSE------RKLKFSNRF---LP----VASPFHSHLLVPA-- 435
Query: 60 ISSEEAQKIIEGLKVIRAEIVDGSF---VFS----RDLEDIHMNIEARLTSLI 105
+ I + L V+ DL + +I R+ I
Sbjct: 436 -----SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCI 483
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.9 bits (71), Expect = 0.30
Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 19/46 (41%)
Query: 311 ALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIE 356
AL L +K L Y+ +D P LAI A +E
Sbjct: 21 ALKKLQASLK---L-YA----DDSAPA-----------LAIKATME 47
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics,
structure 2 function project, S2F, unknown function;
2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Length = 163
Score = 29.4 bits (66), Expect = 1.8
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 26 MEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGIISSEEAQKIIEGLK 73
K + E + G + KQG I +E A+KI + +K
Sbjct: 69 CIKRGIEHSSLDIPAESEHHGKLYSKEIKLKQG-IETEMAKKITKLVK 115
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA
binding, cell cycle; 2.79A {Caenorhabditis elegans}
Length = 376
Score = 28.3 bits (62), Expect = 3.6
Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 9/145 (6%)
Query: 25 IMEKINVSIDFDKKLFEQDILGSKVHTTML---------AKQGIISSEEAQKIIEGLKVI 75
IM + N I + + A+ + + + K+
Sbjct: 57 IMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCHFTVFMALSKMK 116
Query: 76 RAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRNDQVALDLRLWIKEKTL 135
+ V ++++ M+ TAR +N ++ + E
Sbjct: 117 MPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILF 176
Query: 136 EITNDLKKLLTILLDKAEEHHNTIM 160
+ + T+ + + + ++
Sbjct: 177 RESPAPENNFTLHFTLSTYYVDQVL 201
>2bf1_A SIV GP120, exterior membrane glycoprotein GP120; virus protein,
envelope glycoprotein, AIDS, coat protein; HET: NAG BMA
NDG FUC MAN; 4.0A {Simian immunodeficiency virus} PDB:
3fus_A*
Length = 316
Score = 28.2 bits (63), Expect = 4.2
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 155 HHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIE 197
+NT T + P E ++ F + +E
Sbjct: 183 TNNTDKINLTAPRGGDPEVTFMWTNCRGEFLYCKMNWFLNWVE 225
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase;
2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB:
1ksl_A 1ksv_A*
Length = 234
Score = 27.0 bits (59), Expect = 9.2
Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 18/150 (12%)
Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFV----FSRDLEDIHMNIEARLTSLIGSI- 108
+A+Q +S A + I G +V VDG V F E L G
Sbjct: 10 IAQQLGVSRAIAGREIRGNRV----TVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRY 65
Query: 109 ------AGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILL---DKAEEHHNTI 159
G + + + L L L T L+ D + H
Sbjct: 66 FMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRIT 125
Query: 160 MPGFTHLQTAQPVTFGHHCMAYVEMFGRDI 189
P +T E F + +
Sbjct: 126 SPRHHCEKTYLVTLESPVADDTAEQFAKGV 155
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.133 0.382
Gapped
Lambda K H
0.267 0.0562 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,967,989
Number of extensions: 181712
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 38
Length of query: 473
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 377
Effective length of database: 3,365,806
Effective search space: 1268908862
Effective search space used: 1268908862
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.5 bits)