BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780370|ref|YP_003064783.1| argininosuccinate lyase
[Candidatus Liberibacter asiaticus str. psy62]
(473 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780370|ref|YP_003064783.1| argininosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 473
Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60
MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII
Sbjct: 1 MSKKIKSNEVNQMWGGRFSSSPSWIMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60
Query: 61 SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120
SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND
Sbjct: 61 SSEEAQKIIEGLKVIRAEIVDGSFVFSRDLEDIHMNIEARLTSLIGSIAGKMHTARSRND 120
Query: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180
QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA
Sbjct: 121 QVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMA 180
Query: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240
YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD
Sbjct: 181 YVEMFGRDISRFFDSIERLDECPLGAAALAGTSFPIDRHFTAKELGFREPTRNSIDSVSD 240
Query: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300
RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL
Sbjct: 241 RDFILECLSHSAICAMHMSRLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAEL 300
Query: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360
VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV
Sbjct: 301 VRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAMIEDLTV 360
Query: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420
NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML
Sbjct: 361 NKDRLQEAATKSHSTATDLADWLVSHAGLPFREAHYITGCTVSLAEKNQCELAKLPLAML 420
Query: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI 473
QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI
Sbjct: 421 QQISPVITSAVYDILKVESSISSRKSFGGTCAAEVLKQVTYWRNRIQNIPKKI 473
>gi|254780974|ref|YP_003065387.1| adenylosuccinate lyase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 435
Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/358 (26%), Positives = 147/358 (41%), Gaps = 32/358 (8%)
Query: 54 LAKQGIISSEEAQKIIEGLKVIRAEIVDGSFVFSRDLE---DIHMNIEARLTSL---IGS 107
LAK G+I + ++ I E + + F R +E I ++ A LT L IG
Sbjct: 34 LAKLGVIPEKSSKNIWEKGR-------NAVFNVDRIMELDSIIKHDVIAFLTHLAEIIGP 86
Query: 108 IAGKMHTARSRNDQVALDLRLWIKEKTLEITNDLKKLLTILLDKAEEHHNTIMPGFTHLQ 167
A +H + +D + + + T + D+ +LL L +A E+ +T+ G +H
Sbjct: 87 DARFIHQGMTSSDILDTCFSIQLMRSTDILLEDIDQLLESLKKRAFEYKDTLTIGRSHGI 146
Query: 168 TAQPVTFG-HHCMAYVEMFGRDISRFFDSIERLDECPL-GAAALAGTSFPIDRHFTAKEL 225
A+P TFG MAY E F R R + E + C + G+ P A +
Sbjct: 147 HAEPTTFGLKLAMAYAE-FSRSRKRLLTAREEIAVCAISGSVGTFSNIHPYVEQHVADAM 205
Query: 226 GFREPTRNSIDSVSDRDFILECLSHSAICAMHMSRLAEEII-LWSTPQFNFVRLSDAFST 284
G + +S V RD S + A + R+A EI L T
Sbjct: 206 GLKTDPISS--QVIARDRHAMYFSVLGVIASSIERVATEIRHLQRTEILEVEEFFHPGQK 263
Query: 285 GSSIMPQKRNPDGAELVRAKTGRINGALLSLLTIMKGLPLAYSKDMQEDK-EPVF--DAL 341
GSS MP KRNP E + + I ++ M+ + L + +D+ E V DA
Sbjct: 264 GSSSMPHKRNPILTENLTGLSRLIRS---HVIPAMENVALWHERDISHSSVERVIGPDAT 320
Query: 342 ETLQIIILAISAMIEDLTVN----KDRLQEAATKSHSTATDLADWLVSHAGLPFREAH 395
L + + +IE+L V KD L++ HS LA ++ AG+ EA+
Sbjct: 321 IHLDFALNRLKNVIEELVVYPENMKDNLEQLKGLIHSQRILLA---LTQAGVSREEAY 375
>gi|254780190|ref|YP_003064603.1| fumarate hydratase [Candidatus Liberibacter asiaticus str. psy62]
Length = 463
Score = 52.4 bits (124), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 128/335 (38%), Gaps = 49/335 (14%)
Query: 97 IEARLTSLIGSIAGK---------MHTARSRNDQVALDLRLWIKEKTLE-ITNDLKKLLT 146
I R ++G + G ++ +S ND + + E+ + + L+ L
Sbjct: 110 ISNRAIEILGGVMGSKSPVHPNDHVNLCQSSNDTYPTAIHIACAERIVHRLLPTLRNLHV 169
Query: 147 ILLDKAEEHHNTIMPGFTHLQTAQPVTFGHHCMAYVEMFGRDISRFFDSIERLDECPLGA 206
L K + + I G TH Q A P+T G Y I R +++ L E G
Sbjct: 170 ALTKKISDFQDIIKIGRTHTQDATPLTLGQEFSGYATQVKNSIKRIEMTLDGLYELAQGG 229
Query: 207 AALA-GTSFPIDRHFTAKELGFREPTRNSIDSVSDRDFI--------LECLSHSAIC--- 254
A+ G + P+ GF E +I ++ FI L C A C
Sbjct: 230 TAVGTGLNTPV---------GFAEKVAQNIRDITGLPFITAPNKFEALACHDAIAFCHGA 280
Query: 255 ----AMHMSRLAEEI-ILWSTPQFNFVRLS-DAFSTGSSIMPQKRNPDGAELVRAKTGRI 308
A + ++A +I L S P+ L GSSIMP K NP E + I
Sbjct: 281 INTSATALFKIANDIRFLGSGPRSGLGELMLPENEPGSSIMPGKVNPTQCEAITQVCAHI 340
Query: 309 --NGALLSLLTIMKGLPLAYSKDMQEDKEPVFDALETLQIIILAISAM----IEDLTVNK 362
N A ++ L K M ++ L+++Q++ +I + IE + K
Sbjct: 341 FGNHAAITFANSQGHFELNVYKPMI-----AYNVLQSIQLLSDSIDSFTINCIEGIQARK 395
Query: 363 DRLQEAATKSHSTATDLADWL-VSHAGLPFREAHY 396
+ +Q + +S T L + +A + ++AH+
Sbjct: 396 ENIQLSLNRSLMLVTALTSKIGYDNASMIAKKAHH 430
>537021.9.peg.409_1
Length = 242
Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 8/61 (13%)
Query: 245 LECLSHSAICAMHMS-RLAEEIILWSTPQFNFVRLSDAFSTGSSIMPQKRNPDGAELVRA 303
L CL+H+ A MS R+ E I WS LSD + Q + P+ +++ +A
Sbjct: 65 LLCLTHTKAAAAEMSHRVLEIITAWS-------HLSDEILSAEITKIQGKKPNKSDMSKA 117
Query: 304 K 304
+
Sbjct: 118 R 118
>gi|254780723|ref|YP_003065136.1| hypothetical protein CLIBASIA_03050 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 137
Score = 24.6 bits (52), Expect = 3.5, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 359 TVNKDRLQEAATK---SHSTA---TDLADWLVSHAGLPFREAHYITGCTV 402
T + L+EA K +H T D L+S +GLP + HY G V
Sbjct: 54 TKRRKELREAIQKIELNHKAKIGNTKSIDSLISCSGLPISKQHYYIGSCV 103
>gi|254780524|ref|YP_003064937.1| flagellar hook-associated protein FlgK [Candidatus Liberibacter
asiaticus str. psy62]
Length = 480
Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 18 FSSSPSWIMEKINVSIDFDKKLFEQDILGSKV--HTTMLAKQGIISSEEAQKI 68
+++SP+ + K+ S++ K +DILG V + + + S+ E QKI
Sbjct: 96 YNNSPTHYISKLRDSLESYSKNLSEDILGKTVIDNAEEVVQNFNTSAREVQKI 148
>gi|254780821|ref|YP_003065234.1| FolC bifunctional protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 23.1 bits (48), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 25 IMEKINVSIDFDKKLFEQDILGSKVHTTMLAKQGII 60
I+EK+ VS+ L + ILG+ V K GII
Sbjct: 138 IIEKVAVSVITSISLDHEKILGNTVSAIAKDKSGII 173
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 282,054
Number of Sequences: 1233
Number of extensions: 11113
Number of successful extensions: 35
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 8
length of query: 473
length of database: 328,796
effective HSP length: 77
effective length of query: 396
effective length of database: 233,855
effective search space: 92606580
effective search space used: 92606580
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)