HHsearch alignment for GI: 254780371 and conserved domain: COG1166
>COG1166 SpeA Arginine decarboxylase (spermidine biosynthesis) [Amino acid transport and metabolism].
Probab=100.00 E-value=6.4e-42 Score=304.97 Aligned_cols=422 Identities=24% Similarity=0.305 Sum_probs=321.1
Q ss_pred CCCEEEC-CEEEE-------CCCCHHHHHHH-----CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEE
Q ss_conf 8716668-85898-------78429999997-----49978997799999999999986144--------7978999641
Q gi|254780371|r 2 SAFKYFE-GSLHA-------ENVSLEKLAHV-----VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALK 60 (431)
Q Consensus 2 ~~~~~~~-~~l~i-------~~~~l~~La~~-----~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvK 60 (431)
T Consensus 42 ~yF~In~~G~v~V~P~~~~~~~~dL~elV~~l~~~g~~LPlL~rFp~IL~~Rl~~ln~aF~~Ai~ey~Y~g~Y~~VyPIK 121 (652)
T COG1166 42 GYFDINDAGHVTVCPDPDPGARVDLAELVKALRDRGLRLPLLLRFPQILQHRLRSLNAAFARAIEEYGYPGGYFAVYPIK 121 (652)
T ss_pred CCEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 60224478627980699976522099999999965789856985269999999999999999999808898605898766
Q ss_pred CCCCHHHHHHHHHCC----CCEEEECHHHHHHHHHCC-CCCCCEEECCCCCCCHHHHHHH---HCCCC-CCCCCCCHHHH
Q ss_conf 079999999999739----928986899986522125-7843124447754201244442---06872-33332202467
Q gi|254780371|r 61 ANSNQAVIKTLAHLG----SGLDIVSEGELRRALAAP-VPAERIVFSGVGKTIDEIDLAL---QSGIY-CFNVESESELK 131 (431)
Q Consensus 61 aN~~~~il~~l~~~G----~g~dv~S~~El~~al~~G-~~~~~Ii~~g~~k~~~~l~~ai---~~gv~-~i~vDs~~el~ 131 (431)
T Consensus 122 vNQ~r~vVe~Lv~~g~~~~~GLEAGSK~ELm~vLA~~~~~~~~IvCNG-yKDrEyI~lAlig~kLGh~v~ivIEklsEl~ 200 (652)
T COG1166 122 VNQHRRVVESLVASGKGYPLGLEAGSKAELMAVLAHAGNPGSLIVCNG-YKDREYIRLALIGEKLGHKVYIVIEKLSELD 200 (652)
T ss_pred ECCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEECC-CCCHHHHHHHHHHHHHCCCEEEEEECHHHHH
T ss_conf 554188999998636898776667887999999983389997178457-4609999999999982795499992267999
Q ss_pred HHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCHHH
Q ss_conf 6877411334421589987237786744333223344456887111134577764156322-002335564156442048
Q gi|254780371|r 132 TLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVK-ISGVDMHIGSQIDQIESF 210 (431)
Q Consensus 132 ~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~-l~GlH~H~GS~~~~~~~~ 210 (431)
T Consensus 201 ~Vl~eA~~lgvkP~lGvR~RL~s-qGsGkW~~SgG~ksKFGLsa~qvL~~v~~Lre~~~Ld~l~llHFHlGSQisnI~~i 279 (652)
T COG1166 201 LVLEEAKQLGVKPRLGVRARLAS-QGSGKWQSSGGEKSKFGLSATQVLQVVERLREANLLDSLQLLHFHLGSQISNIRDI 279 (652)
T ss_pred HHHHHHHHCCCCCCCEEEEEEEC-CCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 99999997399976336888623-55675000468310148888999999999876265776678764100013456999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCC------CCCHHHHHHHHH-------HHHCCCCCEEEEEECC
Q ss_conf 999999998876531026665268806873000266545------531145655565-------4210245303441011
Q gi|254780371|r 211 HKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR------PPSSSDYASLIH-------QYFGNLQCKIILEPGR 277 (431)
Q Consensus 211 ~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~------~~~~~~~~~~i~-------~~~~~~~~~l~~EPGR 277 (431)
T Consensus 280 k~~~rEA~r~YvEL~klGa~i~~~dVGGGLgVDYdGt~t~~~~S~NY~l~eYA~dVV~~l~d~C~~~~~p~P~IisESGR 359 (652)
T COG1166 280 KTGVREAARFYVELRKLGANIKYFDVGGGLGVDYDGTRTQSDCSKNYGLNEYANDVVWALKDACEEKGLPHPTIISESGR 359 (652)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEECCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCH
T ss_conf 99999999999999982788607851684433216764466323367889999899999999998459999807810442
Q ss_pred EECCCCCEEEEEEEEECCCCCC-CCEEECC------------------------------------------CCCCC---
Q ss_conf 1203663258887640346897-4220055------------------------------------------30001---
Q gi|254780371|r 278 FLVADVGILVTKVISIKKSADK-TFVILDV------------------------------------------AMNDF--- 311 (431)
Q Consensus 278 ~lva~ag~ll~~V~~vK~~~~~-~~~~vD~------------------------------------------g~~~~--- 311 (431)
T Consensus 360 aitAHhaVLI~~Vi~v~~~~~~~~p~~~~~~~~~~l~~~~~e~~~~i~~r~~~E~~hds~~~~~~~~~~f~~G~l~L~~R 439 (652)
T COG1166 360 AITAHHAVLIANVIGVERHEYNDAPLPDAPRNLPPLWRTLQELYESITARNLREWYHDSQDDLEDAHSLFNLGYLSLQER 439 (652)
T ss_pred HHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 32204228986300024578777888888432458999999986345778899999876767999998750353228888
Q ss_pred ------------------------CCC--------------------------HHHCCCCCCCCCCCCCCCCCEEEEEEE
Q ss_conf ------------------------100--------------------------111024653222234677761589998
Q gi|254780371|r 312 ------------------------MRP--------------------------TLYDAYHEINYIVNPAGDRLHIHADIV 341 (431)
Q Consensus 312 ------------------------~~p--------------------------~~~~~~~~i~~~~~~~~~~~~~~~~i~ 341 (431)
T Consensus 440 a~aEqL~~aic~ki~~~~~~~~~~~r~~ldeLqe~ladky~vNfSlFQSlPD~W~IdQlFPI~Pl~r-LdE~PtRravL~ 518 (652)
T COG1166 440 AWAEQLYLAICHKVQQLLRQKNRSHRPILDELQERLADKYYVNFSLFQSLPDAWGIDQLFPILPLHR-LDEEPTRRAVLL 518 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHEEEEHHHHCCCCHHHHCCCCCCCCCCC-CCCCCCCEEEEE
T ss_conf 8799999999999999854530687678999999976674772057505841210023566230223-588755113788
Q ss_pred EEECCCCCEEE---EE------EECCCCCCCC--EEEEECCCCHHHHHHCCCCCCCCCEE--EEEE-CC--EEEEEEECC
Q ss_conf 10005666656---21------0056688888--99996797023334027788986659--9998-89--689998248
Q gi|254780371|r 342 GPICETGDFIA---LN------RKIALPRPGD--LLYIEKTGAYGAVQSGTYNSRLLIPE--IMVN-GS--QFHIIRPRM 405 (431)
Q Consensus 342 G~~C~~~D~l~---~~------~~lp~l~~GD--~l~i~~~GAY~~s~~s~fn~~p~p~~--v~v~-~g--~~~~ir~re 405 (431)
T Consensus 519 DiTCDSDG~Id~yid~~~i~s~Lplh~~~~~epy~lGfFLVGAYQEILG~~HNLFGdt~~v~V~v~~~G~y~ie~~~egd 598 (652)
T COG1166 519 DITCDSDGKIDHYIDGDGIKSTLPLHEYDPGEPYLLGFFLVGAYQEILGNMHNLFGDTTAVHVVVDPKGSYEIEDIVEGD 598 (652)
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCC
T ss_conf 65307988600231376654544478889998756652127579999766665058984589998799867998652356
Q ss_pred CHHHHHH-CCCCCHHHHHCCCC
Q ss_conf 9889973-08885688623432
Q gi|254780371|r 406 TFQELIE-LDSIPAWLQKTPKQ 426 (431)
Q Consensus 406 t~ed~~~-~~~~p~~~~~~~~~ 426 (431)
T Consensus 599 Ti~dmL~yv~yd~~~l~~~~r~ 620 (652)
T COG1166 599 TVADMLEYVQYDPKELLTLYRQ 620 (652)
T ss_pred CHHHHHHHHCCCHHHHHHHHHH
T ss_conf 0999998735699999999999