HHsearch alignment for GI: 254780371 and conserved domain: COG3457
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism].
Probab=99.37 E-value=5.2e-11 Score=94.89 Aligned_cols=305 Identities=15% Similarity=0.199 Sum_probs=192.4
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHCCCCEEE-ECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 9789977999999999999861447978999641079-99999999973992898-689998652212578431244477
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS-NQAVIKTLAHLGSGLDI-VSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~-~~~il~~l~~~G~g~dv-~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
T Consensus 3 ~p~l~Idl~~ieeNak~~~~~a~~~gI~~~~vtK~~~g~~~iae~l~~~Gi~~iaesr~~n~~~lr~~g~~~~~~Llr~P 82 (353)
T COG3457 3 NPGLIIDLDKIEENAKVLQETAARYGIELYGVTKQFGGDPFIAEALLALGIEGIAESRIDNAIRLREAGCTIPGHLLRSP 82 (353)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCCEEEECC
T ss_conf 87178768998876899999998739779998752058818999999658543430227889999975999675476265
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
T Consensus 83 ~~--sei~~vv~~-~Dvs~~sel~~arqlse~A~~~Gk~h~VlLmVd~~D-------l----reG~~~~~~~~l~~~V~e 148 (353)
T COG3457 83 CM--SEIEDVVRK-VDVSTVSELDTARQLSEAAVRMGKVHDVLLMVDYGD-------L----REGQWGFLIEDLEETVEE 148 (353)
T ss_pred CH--HHHHHHHHH-CCEEEEECHHHHHHHHHHHHHHCCCEEEEEEEECCC-------C----CCCCHHHHHHHHHHHHHH
T ss_conf 28--899999873-576897258999999999998275216999998356-------6----674024478888999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 641563220023355641564420489999999988765310-2666526880687300026654553114565556542
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQY 263 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~ 263 (431)
T Consensus 149 I~~lkGi~~vGlgTnF~Cf-g~v~PTp~n~~~ll~~~~~lE~~~Gi~l~~vsagnats--~----~~L~~~~~~~-inh- 219 (353)
T COG3457 149 IQQLKGIHLVGLGTNFPCF-GDVLPTPENLESLLQGKKKLEASSGIQLKQVSAGNATS--L----TLLPMGSLPG-INH- 219 (353)
T ss_pred HHCCCCCEEEEEECCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCC--H----HHHHCCCCCC-CCC-
T ss_conf 9669983598631166545-67678840489999999998773295058812798620--3----3201455225-555-
Q ss_pred HCCCCCEEEEEECCEE--------------CCCCCEEEEEEEEECCCCCCCCE--------EECCCCCCCCCCHHHCCCC
Q ss_conf 1024530344101112--------------03663258887640346897422--------0055300011001110246
Q gi|254780371|r 264 FGNLQCKIILEPGRFL--------------VADVGILVTKVISIKKSADKTFV--------ILDVAMNDFMRPTLYDAYH 321 (431)
Q Consensus 264 ~~~~~~~l~~EPGR~l--------------va~ag~ll~~V~~vK~~~~~~~~--------~vD~g~~~~~~p~~~~~~~ 321 (431)
T Consensus 220 ---------lriG~al~~g~~~~n~~~~~~e~da~~lesEIie~k~k~s~~ige~f~~~~~f~d~g~~~rAi~ai-g-~~ 288 (353)
T COG3457 220 ---------LRIGEALTGGVTPTNQYIDWLEQDAMLLESEIIEVKDKPSYPIGEGFYRRSGFVDAGIRLRAIAAI-G-EQ 288 (353)
T ss_pred ---------CCCCCEEECCCCCCHHCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHH-H-HH
T ss_conf ---------444521453610201102300352210112455215788612054213566654420347887776-5-52
Q ss_pred CCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEC-CCCCCCCEEEEECC
Q ss_conf 532222346777615899981000566665621005-66888889999679
Q gi|254780371|r 322 EINYIVNPAGDRLHIHADIVGPICETGDFIALNRKI-ALPRPGDLLYIEKT 371 (431)
Q Consensus 322 ~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~l-p~l~~GD~l~i~~~ 371 (431)
T Consensus 289 dv-~~~~--~spiD~~i~ilgas---SDhvvld~~~q~~v~vgDvv~fr~~ 333 (353)
T COG3457 289 DV-DVVN--LSPIDYGIDILGAS---SDHVVLDFRDQIFVTVGDVVRFRLI 333 (353)
T ss_pred CC-CCCC--CCCHHHHHHHHCCC---CCCEEEEECCCCCCEEEEEEEEEEC
T ss_conf 47-7678--86276654453246---7718999605643224028999842