HHsearch alignment for GI: 254780371 and conserved domain: TIGR01273
>TIGR01273 speA arginine decarboxylase; InterPro: IPR002985 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes eukaryotic ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of ~55 kD . The predicted amino acid sequence shares 47 and 38 0dentify with oat and Escherichia coli ADCs, respectively. Gel blot hybridisation experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of ~2.2 kb in the fruit pericarp and leaf tissues .; GO: 0008792 arginine decarboxylase activity, 0006527 arginine catabolic process, 0008295 spermidine biosynthetic process.
Probab=99.83 E-value=2.5e-19 Score=151.45 Aligned_cols=400 Identities=25% Similarity=0.337 Sum_probs=286.4
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEECCCCHHHHHHHHHCC------CCEEEECHHHHHHHH
Q ss_conf 49978997799999999999986144--------7978999641079999999999739------928986899986522
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALKANSNQAVIKTLAHLG------SGLDIVSEGELRRAL 90 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvKaN~~~~il~~l~~~G------~g~dv~S~~El~~al 90 (431)
T Consensus 61 ~~~p~~~~fp~~~~~~~~~~~~~f~~~~~~~~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gl~~g~~p~~~~~~ 140 (657)
T TIGR01273 61 LKLPLLLRFPDILQHRLRSLNDAFDNAIEEYGYPGHYQGVYPIKVNQHRGVVEDLVAFGKGYGLPLGLEAGSKPELLLAL 140 (657)
T ss_pred CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 12540010157888998888888877776413676301564132054156899987521014654332357623677876
Q ss_pred HCCC---CCCCEEECCCCCCCHHHHHHHH---CCCC-CCCCCCCHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCC
Q ss_conf 1257---8431244477542012444420---6872-3333220246768774113--3442158998723778674433
Q gi|254780371|r 91 AAPV---PAERIVFSGVGKTIDEIDLALQ---SGIY-CFNVESESELKTLNQRAVS--LGKKAPIAFRVNPDINANTHKK 161 (431)
Q Consensus 91 ~~G~---~~~~Ii~~g~~k~~~~l~~ai~---~gv~-~i~vDs~~el~~l~~~a~~--~~~~~~I~lRinp~~~~~~~~~ 161 (431)
T Consensus 141 ~~~~~~~~~~~~~c~g-~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~-~~g~w 218 (657)
T TIGR01273 141 ALATKGNPGAPIVCNG-YKDREYIELALIGRKLGHNVFIVLEKLSELDLVLDEAKKNELGVKPKLGLRARLLSK-GSGKW 218 (657)
T ss_pred HHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHC-CCCCC
T ss_conf 6621467763478616-541457777765431165148885144667899876521222455443300110000-35522
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCC
Q ss_conf 3223344456887111134577764156322-00233556415644204899999999887653102666-526880687
Q gi|254780371|r 162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVK-ISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHN-IQHIDVGGG 239 (431)
Q Consensus 162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~-l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~ldiGGG 239 (431)
T Consensus 219 ~~~~g~~~~fgl~~~~~~~~~~~~~~~~~~~~~~~~h~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ggg 298 (657)
T TIGR01273 219 GSSGGEKSKFGLSASEVLEVVKLLEENGLLDSLKLLHFHLGSQISNLDDLKKGLREAARLYCELRKLGAPNIDYVDVGGG 298 (657)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 12356532135548999999998764013455666554311100136788888888899999998724553315644765
Q ss_pred CCCCCCCC-CC------CCCHHHHHHHHHHHH-------CCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCC-C-EE
Q ss_conf 30002665-45------531145655565421-------024530344101112036632588876403468974-2-20
Q gi|254780371|r 240 LGIAYHSD-HR------PPSSSDYASLIHQYF-------GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKT-F-VI 303 (431)
Q Consensus 240 f~i~y~~~-~~------~~~~~~~~~~i~~~~-------~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~-~-~~ 303 (431)
T Consensus 299 lg~~y~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~c~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (657)
T TIGR01273 299 LGVDYDGTKSSSSDCSVNYGLEEYASDVVGALREVCDDKGLPHPVIITESGRALTAHHAVLVTNVLGVEAHPEDPPDPEP 378 (657)
T ss_pred CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 32244543234320011023678888999999988874077676233026630000002111133311234556542000
Q ss_pred EC-C----------CCCCC-------------------------------------------------------------
Q ss_conf 05-5----------30001-------------------------------------------------------------
Q gi|254780371|r 304 LD-V----------AMNDF------------------------------------------------------------- 311 (431)
Q Consensus 304 vD-~----------g~~~~------------------------------------------------------------- 311 (431)
T Consensus 379 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (657)
T TIGR01273 379 LDEDAPPLVRGLWETLEDLYGPLDRRSLLELLHDALHLLEEAVEGFALGYLDLEERAWAEQLYLAILRKLHGKLSAKNKD 458 (657)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 13430268888889999874000024678888888888877776553010014666667899999998887766642144
Q ss_pred CCCHH--------------------------HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE-------EE--EE
Q ss_conf 10011--------------------------102465322223467776158999810005666656-------21--00
Q gi|254780371|r 312 MRPTL--------------------------YDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIA-------LN--RK 356 (431)
Q Consensus 312 ~~p~~--------------------------~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~-------~~--~~ 356 (431)
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~f~~~pd~w~~~~~~p~~p~~-~l~~~p~~~~~~~d~~cd~dg~~~~~~~~~~~~~~~p 537 (657)
T TIGR01273 459 HRPVLDELQERLADKYLVNFSLFQSLPDAWGIDQLFPILPLE-RLDEKPDRRAVLLDLTCDSDGKVDKFVGGQGLESTLP 537 (657)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH-HCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf 215788766666666653124443143111010101222200-0243200111010001477520344412355422133
Q ss_pred CC--CC---CCC-CEEEEECCCCHHHHHHCCCCCCCCCEE--EEEE-CC---EEEEEEECCCHHHHHH-CCCCCHHHHHC
Q ss_conf 56--68---888-899996797023334027788986659--9998-89---6899982489889973-08885688623
Q gi|254780371|r 357 IA--LP---RPG-DLLYIEKTGAYGAVQSGTYNSRLLIPE--IMVN-GS---QFHIIRPRMTFQELIE-LDSIPAWLQKT 423 (431)
Q Consensus 357 lp--~l---~~G-D~l~i~~~GAY~~s~~s~fn~~p~p~~--v~v~-~g---~~~~ir~ret~ed~~~-~~~~p~~~~~~ 423 (431)
T Consensus 538 ~~~~~~~gc~~~~~~~g~~~~g~y~~~lg~~h~lfg~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 617 (657)
T TIGR01273 538 LHELDPNGCDEGGYLLGFFLVGAYQEILGDLHNLFGDTDAVEVVLDGDGGGYEVELVLEGDTTEDLLRYVSYDPEELLTL 617 (657)
T ss_pred CCCCCCCCCCCCCCEEEEEEHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCEEHHHHHHCCHHHHHHHHHCCCHHHHHHH
T ss_conf 45556667776640564210223687631122204885147887627875300123430202788888631466899999
Q ss_pred CCCC
Q ss_conf 4321
Q gi|254780371|r 424 PKQS 427 (431)
Q Consensus 424 ~~~~ 427 (431)
T Consensus 618 ~~~~ 621 (657)
T TIGR01273 618 LRDL 621 (657)
T ss_pred HHHH
T ss_conf 9886