HHsearch alignment for GI: 254780371 and conserved domain: TIGR01273

>TIGR01273 speA arginine decarboxylase; InterPro: IPR002985 Pyridoxal-dependent decarboxylases that act on ornithine-, lysine-, arginine- and related substrates can be classified into different families on the basis of sequence similarity , . One of these families includes eukaryotic ornithine decarboxylase (ODC), which catalyses the transformation of ornithine into putrescine; prokaryotic diaminopimelic acid decarboxylase (DAPDC), which catalyses the conversion of diaminopimelic acid into lysine, the final step of lysine biosynthesis; Pseudomonas syringae pv. tabaci protein, tabA, which is probably involved in tabtoxin biosynthesis and is similar to DAPDC; and bacterial and plant biosynthetic arginine decarboxylase (ADC), which catalyses the transformation of arginine into agmatine, the first step in putrescine synthesis from arginine. Although these proteins, which are known collectively as group IV decarboxylases , probably share a common evolutionary origin, their levels of sequence similarity are low, being confined to a few short conserved regions. The tomato ADC gene contains an open reading frame encoding a polypeptide of 502 amino acids and a predicted molecular mass of ~55 kD . The predicted amino acid sequence shares 47 and 38 0dentify with oat and Escherichia coli ADCs, respectively. Gel blot hybridisation experiments show that, in tomato, ADC is encoded by a single gene and is expressed as a transcript of ~2.2 kb in the fruit pericarp and leaf tissues .; GO: 0008792 arginine decarboxylase activity, 0006527 arginine catabolic process, 0008295 spermidine biosynthetic process.
Probab=99.83  E-value=2.5e-19  Score=151.45  Aligned_cols=400  Identities=25%  Similarity=0.337  Sum_probs=286.4

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHCCC--------CCCEEEEEEECCCCHHHHHHHHHCC------CCEEEECHHHHHHHH
Q ss_conf             49978997799999999999986144--------7978999641079999999999739------928986899986522
Q gi|254780371|r   25 VQTPFYCYSTTAIEKNYLTFSNAFDG--------MDTMVCYALKANSNQAVIKTLAHLG------SGLDIVSEGELRRAL   90 (431)
Q Consensus        25 ~gTP~yV~d~~~i~~n~~~l~~a~~~--------~~~~i~yAvKaN~~~~il~~l~~~G------~g~dv~S~~El~~al   90 (431)
T Consensus        61 ~~~p~~~~fp~~~~~~~~~~~~~f~~~~~~~~y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gl~~g~~p~~~~~~  140 (657)
T TIGR01273        61 LKLPLLLRFPDILQHRLRSLNDAFDNAIEEYGYPGHYQGVYPIKVNQHRGVVEDLVAFGKGYGLPLGLEAGSKPELLLAL  140 (657)
T ss_pred             CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf             12540010157888998888888877776413676301564132054156899987521014654332357623677876


Q ss_pred             HCCC---CCCCEEECCCCCCCHHHHHHHH---CCCC-CCCCCCCHHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCC
Q ss_conf             1257---8431244477542012444420---6872-3333220246768774113--3442158998723778674433
Q gi|254780371|r   91 AAPV---PAERIVFSGVGKTIDEIDLALQ---SGIY-CFNVESESELKTLNQRAVS--LGKKAPIAFRVNPDINANTHKK  161 (431)
Q Consensus        91 ~~G~---~~~~Ii~~g~~k~~~~l~~ai~---~gv~-~i~vDs~~el~~l~~~a~~--~~~~~~I~lRinp~~~~~~~~~  161 (431)
T Consensus       141 ~~~~~~~~~~~~~c~g-~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~l~~~-~~g~w  218 (657)
T TIGR01273       141 ALATKGNPGAPIVCNG-YKDREYIELALIGRKLGHNVFIVLEKLSELDLVLDEAKKNELGVKPKLGLRARLLSK-GSGKW  218 (657)
T ss_pred             HHHCCCCCCCEEEECC-CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCEEEEHHC-CCCCC
T ss_conf             6621467763478616-541457777765431165148885144667899876521222455443300110000-35522


Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC-CCEEEECCC
Q ss_conf             3223344456887111134577764156322-00233556415644204899999999887653102666-526880687
Q gi|254780371|r  162 ISTGKKEDKFGIPIHQIHSLYAYASTLPGVK-ISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHN-IQHIDVGGG  239 (431)
Q Consensus       162 ~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~-l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~ldiGGG  239 (431)
T Consensus       219 ~~~~g~~~~fgl~~~~~~~~~~~~~~~~~~~~~~~~h~h~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ggg  298 (657)
T TIGR01273       219 GSSGGEKSKFGLSASEVLEVVKLLEENGLLDSLKLLHFHLGSQISNLDDLKKGLREAARLYCELRKLGAPNIDYVDVGGG  298 (657)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             12356532135548999999998764013455666554311100136788888888899999998724553315644765


Q ss_pred             CCCCCCCC-CC------CCCHHHHHHHHHHHH-------CCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCC-C-EE
Q ss_conf             30002665-45------531145655565421-------024530344101112036632588876403468974-2-20
Q gi|254780371|r  240 LGIAYHSD-HR------PPSSSDYASLIHQYF-------GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKT-F-VI  303 (431)
Q Consensus       240 f~i~y~~~-~~------~~~~~~~~~~i~~~~-------~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~-~-~~  303 (431)
T Consensus       299 lg~~y~g~~~~~~~~~~~y~~~~~~~~~~~~~~~~c~~~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (657)
T TIGR01273       299 LGVDYDGTKSSSSDCSVNYGLEEYASDVVGALREVCDDKGLPHPVIITESGRALTAHHAVLVTNVLGVEAHPEDPPDPEP  378 (657)
T ss_pred             CCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCHHCCHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             32244543234320011023678888999999988874077676233026630000002111133311234556542000


Q ss_pred             EC-C----------CCCCC-------------------------------------------------------------
Q ss_conf             05-5----------30001-------------------------------------------------------------
Q gi|254780371|r  304 LD-V----------AMNDF-------------------------------------------------------------  311 (431)
Q Consensus       304 vD-~----------g~~~~-------------------------------------------------------------  311 (431)
T Consensus       379 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  458 (657)
T TIGR01273       379 LDEDAPPLVRGLWETLEDLYGPLDRRSLLELLHDALHLLEEAVEGFALGYLDLEERAWAEQLYLAILRKLHGKLSAKNKD  458 (657)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             13430268888889999874000024678888888888877776553010014666667899999998887766642144


Q ss_pred             CCCHH--------------------------HCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEE-------EE--EE
Q ss_conf             10011--------------------------102465322223467776158999810005666656-------21--00
Q gi|254780371|r  312 MRPTL--------------------------YDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIA-------LN--RK  356 (431)
Q Consensus       312 ~~p~~--------------------------~~~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~-------~~--~~  356 (431)
T Consensus       459 ~~~~~~~~~~~~~~~~~~~~~~f~~~pd~w~~~~~~p~~p~~-~l~~~p~~~~~~~d~~cd~dg~~~~~~~~~~~~~~~p  537 (657)
T TIGR01273       459 HRPVLDELQERLADKYLVNFSLFQSLPDAWGIDQLFPILPLE-RLDEKPDRRAVLLDLTCDSDGKVDKFVGGQGLESTLP  537 (657)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHH-HCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf             215788766666666653124443143111010101222200-0243200111010001477520344412355422133


Q ss_pred             CC--CC---CCC-CEEEEECCCCHHHHHHCCCCCCCCCEE--EEEE-CC---EEEEEEECCCHHHHHH-CCCCCHHHHHC
Q ss_conf             56--68---888-899996797023334027788986659--9998-89---6899982489889973-08885688623
Q gi|254780371|r  357 IA--LP---RPG-DLLYIEKTGAYGAVQSGTYNSRLLIPE--IMVN-GS---QFHIIRPRMTFQELIE-LDSIPAWLQKT  423 (431)
Q Consensus       357 lp--~l---~~G-D~l~i~~~GAY~~s~~s~fn~~p~p~~--v~v~-~g---~~~~ir~ret~ed~~~-~~~~p~~~~~~  423 (431)
T Consensus       538 ~~~~~~~gc~~~~~~~g~~~~g~y~~~lg~~h~lfg~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  617 (657)
T TIGR01273       538 LHELDPNGCDEGGYLLGFFLVGAYQEILGDLHNLFGDTDAVEVVLDGDGGGYEVELVLEGDTTEDLLRYVSYDPEELLTL  617 (657)
T ss_pred             CCCCCCCCCCCCCCEEEEEEHHHHHHHHCCHHHHCCCCCEEEEEECCCCCCEEHHHHHHCCHHHHHHHHHCCCHHHHHHH
T ss_conf             45556667776640564210223687631122204885147887627875300123430202788888631466899999


Q ss_pred             CCCC
Q ss_conf             4321
Q gi|254780371|r  424 PKQS  427 (431)
Q Consensus       424 ~~~~  427 (431)
T Consensus       618 ~~~~  621 (657)
T TIGR01273       618 LRDL  621 (657)
T ss_pred             HHHH
T ss_conf             9886