HHsearch alignment for GI: 254780371 and conserved domain: cd06808
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=100.00 E-value=1.6e-42 Score=309.05 Aligned_cols=211 Identities=31% Similarity=0.518 Sum_probs=194.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCCCCCHHHHHHHH
Q ss_conf 99999999986144797899964107999999999973992898689998652212578431244477542012444420
Q gi|254780371|r 37 IEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQ 116 (431)
Q Consensus 37 i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~k~~~~l~~ai~ 116 (431)
T Consensus 1 ir~N~~~lk~~l~~-~~~i~~avKAn~~~~v~~~l~~~g~g~~vas~~E~~~~~~~G~~~~~Il~~g~~~~~~~~~~a~~ 79 (211)
T cd06808 1 IRHNYRRLREAAPA-GITLFAVVKANANPEVARTLAALGTGFDVASLGEALLLRAAGIPPEPILFLGPCKQVSELEDAAE 79 (211)
T ss_pred CHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHH
T ss_conf 97999999986899-98899998308829999999973890789609999999975997556101566476689999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 68723333220246768774113344215899872377867443332233444568871111345777641563220023
Q gi|254780371|r 117 SGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGV 196 (431)
Q Consensus 117 ~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~~~l~l~Gl 196 (431)
T Consensus 80 ~~~~~~~vds~~~l~~l~~~a~~~~~~~~v~lrintg------------~~~~rfG~~~~e~~~~~~~~~~~~~l~l~Gi 147 (211)
T cd06808 80 QGVIVVTVDSLEELEKLEEAALKAGPPARVLLRIDTG------------DENGKFGVRPEELKALLERAKELPHLRLVGL 147 (211)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC------------CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf 6122401067788877899888538885147767227------------7767778899999999999996898666114
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 35564156442048999999998876531026665268806873000266545531145655565421024530344101
Q gi|254780371|r 197 DMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYFGNLQCKIILEPG 276 (431)
Q Consensus 197 H~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~~~~~~~l~~EPG 276 (431)
T Consensus 148 ~~H~gs~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~i~iGgg~gv~y~~e~-----------------p~~~~~~vrpG 210 (211)
T cd06808 148 HTHFGSADEDYSPFVEALSRFVAALDQLGELGIDLEQLSIGGSFAILYLQEL-----------------PLGTFIIVEPG 210 (211)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC-----------------CHHHEEEECCC
T ss_conf 6654344389899999999999999999975969798996998243789889-----------------82670463479
Q ss_pred C
Q ss_conf 1
Q gi|254780371|r 277 R 277 (431)
Q Consensus 277 R 277 (431)
T Consensus 211 ~ 211 (211)
T cd06808 211 R 211 (211)
T ss_pred C
T ss_conf 9