HHsearch alignment for GI: 254780371 and conserved domain: cd06815
>cd06815 PLPDE_III_AR_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.
Probab=99.81 E-value=3.8e-17 Score=136.59 Aligned_cols=318 Identities=16% Similarity=0.200 Sum_probs=217.2
Q ss_pred CCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 9789977999999999999861447978999641079-9999999997399-2898689998652212578431244477
Q gi|254780371|r 27 TPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANS-NQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 27 TP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~-~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
T Consensus 1 ~PrleIdL~~l~~N~~~l~~~~~~~gi~~~~VvKa~aG~~~iA~~l~~~G~~~lavari~e~~~LR~~Gi~~pillL~~p 80 (353)
T cd06815 1 YPRLEINLSKIRHNAKVLVELCKSRGIEVTGVTKVVCGDPEIAEALLEGGITHLADSRIENLKKLKDLGISGPKMLLRIP 80 (353)
T ss_pred CCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 97699839999999999999760549889999844689599999999879999997028999999975999978997268
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
T Consensus 81 ~--~se~~~vv~~~dis~-~se~~~i~aLs~~A~~~gk~~~V~l~V------------DtG--m~R~Gv~ped~~~~~~~ 143 (353)
T cd06815 81 M--LSEVEDVVKYADISL-NSELETIKALSEEAKKQGKIHKIILMV------------DLG--DLREGVLPEDLLDFVEE 143 (353)
T ss_pred C--HHHHHHHHHHCEEEE-CCCHHHHHHHHHHHHHCCCEEEEEEEE------------ECC--CCCCCCCHHHHHHHHHH
T ss_conf 8--889999987330420-287999999999999869847899999------------689--99578898999999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCC-CCCHHHH--HHHH
Q ss_conf 64156322002335564156442048999999998876531-026665268806873000266545-5311456--5556
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGLGIAYHSDHR-PPSSSDY--ASLI 260 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf~i~y~~~~~-~~~~~~~--~~~i 260 (431)
T Consensus 144 I~~lp~i~l~GI~ThfaC~~-gv~pt~~~~~~l~~~~~~ie~~~g~~l~~iSgGnS~~l~~~~~~~~~~~IN~lRiGe~i 222 (353)
T cd06815 144 ILKLPGIELVGIGTNLGCYG-GVLPTEENMGKLVELKEEIEKEFGIKLPIISGGNSASLPLLLKGELPGGINQLRIGEAI 222 (353)
T ss_pred HHCCCCCEEEEEEECHHHCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCCCCCCCEE
T ss_conf 86599959999888763578-88999999999999999999984998766970537768988558985432103333158
Q ss_pred HHHHCCCCCEEEEEECCEECCCCCEEEEEEEEECCCCCCCC----------------------EEECCCCCCCCCCHHHC
Q ss_conf 54210245303441011120366325888764034689742----------------------20055300011001110
Q gi|254780371|r 261 HQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTF----------------------VILDVAMNDFMRPTLYD 318 (431)
Q Consensus 261 ~~~~~~~~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~----------------------~~vD~g~~~~~~p~~~~ 318 (431)
T Consensus 223 ~--~G~-~~-~~~~~i~~l~~d~~~L~aeViEik~kps~p~g~~g~~afG~~~~f~d~g~~~rAIl~iG~~D~------- 291 (353)
T cd06815 223 L--LGR-ET-TYNEPIPGLYQDAFTLEAEIIEIKEKPSVPIGEIGLDAFGNKPEFEDRGIRKRAILAIGRQDV------- 291 (353)
T ss_pred E--EEC-CC-CCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEEEECCCCCC-------
T ss_conf 9--612-57-777643000464189999999950467778763122577875224268841799997665557-------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCEEEEEEEC--CCCCCCCEEEEEC-CCCHHHHHHCCCCC
Q ss_conf 246532222346777615899981000566665621005--6688888999967-97023334027788
Q gi|254780371|r 319 AYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKI--ALPRPGDLLYIEK-TGAYGAVQSGTYNS 384 (431)
Q Consensus 319 ~~~~i~~~~~~~~~~~~~~~~i~G~~C~~~D~l~~~~~l--p~l~~GD~l~i~~-~GAY~~s~~s~fn~ 384 (431)
T Consensus 292 ---~~~~l-----~p~~~~i~IlGa---sSDhlivDit~~~~~~kvGD~i~F~l~Y~a~l~~m~s~~v~ 349 (353)
T cd06815 292 ---DPDGL-----TPVDNGIEILGA---SSDHLILDITDSDRDYKVGDEIRFNLDYGALLRAMTSPYVE 349 (353)
T ss_pred ---CHHHC-----EECCCCEEEEEC---CCCEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHCCCCEE
T ss_conf ---77563-----477998099822---57548997767768888898899965999999984589814