HHsearch alignment for GI: 254780371 and conserved domain: cd06818
>cd06818 PLPDE_III_cryptic_DSD Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties
Probab=99.91 E-value=2.4e-21 Score=165.12 Aligned_cols=329 Identities=15% Similarity=0.177 Sum_probs=211.5
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 997899779999999999998614479789996410799999999997399-2898689998652212578431244477
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
T Consensus 2 ~TPaLvvD~~~le~Ni~~M~~~~~~~gv~lRPH~KTHKs~eia~~Q~~~Ga~git~at~~EAe~~~~~G~~--dilia~~ 79 (382)
T cd06818 2 SLPLLVLDASALAHNLAWMQAFAAAHGVKLAPHGKTTMAPQLFRRQLEAGAWGITVATVAQARVALAFGVR--RVLLANQ 79 (382)
T ss_pred CCCEEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCC--CEEEECC
T ss_conf 99779970999999999999999866983520401004799999999689983896779999999976986--4799426
Q ss_pred CCCCHHHHHH---HHC--CCC-CCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCC-CCCC
Q ss_conf 5420124444---206--872-33332202467687741133442158998723778674433322334445688-7111
Q gi|254780371|r 105 GKTIDEIDLA---LQS--GIY-CFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGI-PIHQ 177 (431)
Q Consensus 105 ~k~~~~l~~a---i~~--gv~-~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi-~~~~ 177 (431)
T Consensus 80 iv~~~~~~rl~~l~~~~~~~~i~~~vD~~~~~~~l~~~~~~~~~~~~V~ievd~G--------------~~R~Gv~~~~~ 145 (382)
T cd06818 80 LVGKANLRRLAALLAADPDFEFFCLVDSVDNVRALAAFFAALERPLNVLIELGVP--------------GGRTGVRTEAE 145 (382)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCC--------------CCCCCCCCHHH
T ss_conf 5798899999999850899789999629999999999998559945899997889--------------88789998699
Q ss_pred CHHHHHHHHHCCCCCHHHHHHHHHHCC--CC---CHHHHHHHHHHHHHHHHHHCCCCCC-C--EEEECCCCCCCCCCCCC
Q ss_conf 134577764156322002335564156--44---2048999999998876531026665-2--68806873000266545
Q gi|254780371|r 178 IHSLYAYASTLPGVKISGVDMHIGSQI--DQ---IESFHKAFKLLRDLTQQLRSNGHNI-Q--HIDVGGGLGIAYHSDHR 249 (431)
Q Consensus 178 ~~~~~~~~~~~~~l~l~GlH~H~GS~~--~~---~~~~~~~~~~~~~~~~~l~~~g~~~-~--~ldiGGGf~i~y~~~~~ 249 (431)
T Consensus 146 a~~l~~~i~~~~~L~~~Gl~~y~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivs-~GgT--------- 215 (382)
T cd06818 146 ALALADAIAASPALRLAGVEGYEGVAAHDDSEETLAAVRAFLARAVDLARRLAERGLFPDRELILT-AGGS--------- 215 (382)
T ss_pred HHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE-EECC---------
T ss_conf 999999997299965946885467566788668999999999999999999997067888970899-8289---------
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEECCEECCC-------------------------CCEEEEEEEEECCCCCCCCEEE
Q ss_conf 531145655565421024530344101112036-------------------------6325888764034689742200
Q gi|254780371|r 250 PPSSSDYASLIHQYFGNLQCKIILEPGRFLVAD-------------------------VGILVTKVISIKKSADKTFVIL 304 (431)
Q Consensus 250 ~~~~~~~~~~i~~~~~~~~~~l~~EPGR~lva~-------------------------ag~ll~~V~~vK~~~~~~~~~v 304 (431)
T Consensus 216 -~~f~~~~~~~~~~~~~~~~~~elrpG~Yvf~D~g~Y~~~~~~~~~~~~~~~~~~f~~Al~VlttViS~---p~~~~ail 291 (382)
T cd06818 216 -AWFDLVAEALAALALDGPVTLVLRSGCYVTHDHGIYRRAQQALRARDPLSLAGALRPALEIWAYVQSR---PEPGLAIL 291 (382)
T ss_pred -CCHHHHHHHHCCCCCCCCCEEEECCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEECC---CCCCEEEE
T ss_conf -55433345541445687732798671699745278764324443036655332221215999999642---46996998
Q ss_pred CCCCCCCCCCHHHCCCCCCCCC-CCCC-CC-CCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCC
Q ss_conf 5530001100111024653222-2346-77-7615899981000566665621005668888899996797023334027
Q gi|254780371|r 305 DVAMNDFMRPTLYDAYHEINYI-VNPA-GD-RLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGT 381 (431)
Q Consensus 305 D~g~~~~~~p~~~~~~~~i~~~-~~~~-~~-~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~ 381 (431)
T Consensus 292 DaG~K~ls~D~----g~P~~~~~~~~g~~~~~~~~~~~v~-~~seEHgil~~~-~~~~l~vGd~v~iiP~H~-C----~T 360 (382)
T cd06818 292 GMGKRDVAFDA----GLPVPLRVFRPGGGVVRLPDGWEVT-ALNDQHAFLRLP-PESPLAVGDVIAFGISHP-C----TT 360 (382)
T ss_pred CCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCEEEE-CCCCCEEEEECC-CCCCCCCCCEEEEECCCC-C----CC
T ss_conf 88651200246----9986532015885323589970780-113632478779-989999977899979964-7----39
Q ss_pred CCCCCCCEEEEEECCE
Q ss_conf 7889866599998896
Q gi|254780371|r 382 YNSRLLIPEIMVNGSQ 397 (431)
Q Consensus 382 fn~~p~p~~v~v~~g~ 397 (431)
T Consensus 361 ~n~~~--~~~vVd~~~ 374 (382)
T cd06818 361 FDKWR--VILLVDDDY 374 (382)
T ss_pred HHHCC--EEEEEECCC
T ss_conf 11088--899997988