HHsearch alignment for GI: 254780371 and conserved domain: cd06824
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=98.88 E-value=7.7e-08 Score=73.34 Aligned_cols=189 Identities=17% Similarity=0.169 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHCCC--CCCEEEEEEECCCCHHHHHHHHHCCCC-EEEECHHHHHH-HHHC-CCCCCCEEECCCCCCC
Q ss_conf 99999999999986144--797899964107999999999973992-89868999865-2212-5784312444775420
Q gi|254780371|r 34 TTAIEKNYLTFSNAFDG--MDTMVCYALKANSNQAVIKTLAHLGSG-LDIVSEGELRR-ALAA-PVPAERIVFSGVGKTI 108 (431)
Q Consensus 34 ~~~i~~n~~~l~~a~~~--~~~~i~yAvKaN~~~~il~~l~~~G~g-~dv~S~~El~~-al~~-G~~~~~Ii~~g~~k~~ 108 (431)
T Consensus 6 l~~i~~~I~~a~~~~gR~~~~V~LiaVSK~~~~e~I-~~a~~~G~~~fGENrvQE~~~K~~~l~~~~~i~wHfIG~LQsN 84 (224)
T cd06824 6 LAQVKQRIAQAAKQAGRDPSSVQLLAVSKTKPADAI-REAYAAGQRHFGENYVQEALEKIEALRDLQDIEWHFIGPIQSN 84 (224)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHH-HHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCHH
T ss_conf 999999999999983879576599998899899999-9999869952478709999999998533789559997755201
Q ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 12444420687233332202467687741133442158998723778674433322334445688711113457776415
Q gi|254780371|r 109 DEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTL 188 (431)
Q Consensus 109 ~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~~~ 188 (431)
T Consensus 85 K-vk~i~~~~~~IhSvDs~kla~~l~~~~~~~~~~~~vliQVN~------------s~E~~K~G~~~~e~~~~~~~i~~~ 151 (224)
T cd06824 85 K-TKLIAENFDWVHSVDRLKIAKRLNDQRPAGLPPLNVCIQVNI------------SGEDSKSGVAPEDAAELAEAISQL 151 (224)
T ss_pred H-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEC------------CCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 6-799998521897645099999999999972998628999853------------785002698999999999999956
Q ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 6322002335564156442048999999998876531026665268806
Q gi|254780371|r 189 PGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVG 237 (431)
Q Consensus 189 ~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiG 237 (431)
T Consensus 152 ~~l~i~GLMt-i~p~~~d~~~~r~~F~~l~~l~~~l~~~~~~~~~LSMG 199 (224)
T cd06824 152 PNLRLRGLMA-IPAPTDDEAAQRAAFKRLRQLFDQLKKQYPDLDTLSMG 199 (224)
T ss_pred CCCCEEEEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCC
T ss_conf 9984266776-57999885789999999999999998517998957770