HHsearch alignment for GI: 254780371 and conserved domain: cd06828
>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00 E-value=0 Score=721.85 Aligned_cols=368 Identities=48% Similarity=0.780 Sum_probs=351.7
Q ss_pred CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf 49978997799999999999986144797899964107999999999973992898689998652212578431244477
Q gi|254780371|r 25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV 104 (431)
Q Consensus 25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~ 104 (431)
T Consensus 1 yGTP~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp 80 (373)
T cd06828 1 YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGN 80 (373)
T ss_pred CCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf 99988998899999999999986045897899986227999999999985991899799999999984999545998176
Q ss_pred CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r 105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184 (431)
Q Consensus 105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~ 184 (431)
T Consensus 81 ~K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~ 160 (373)
T cd06828 81 GKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRR 160 (373)
T ss_pred CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 41137899999739856762999999999986276199854999988898877776231377532138999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 64156322002335564156442048999999998876531026665268806873000266545531145655565421
Q gi|254780371|r 185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF 264 (431)
Q Consensus 185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~ 264 (431)
T Consensus 161 ~~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~~l 240 (373)
T cd06828 161 AKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEAL 240 (373)
T ss_pred HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 98579984688788647666887999999999999999999749986577436874645788889989999999999999
Q ss_pred CCC-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 024-----530344101112036632588876403468974220055300011001110246532222346777615899
Q gi|254780371|r 265 GNL-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHAD 339 (431)
Q Consensus 265 ~~~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~ 339 (431)
T Consensus 241 ~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~D~g~~~~~rP~ly~~~~~i~~~~~~-~~~~~~~~~ 319 (373)
T cd06828 241 KELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKP-GEGETEKVD 319 (373)
T ss_pred HHHHCCCCCCEEEEECCHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEECCCC-CCCCCEEEE
T ss_conf 9974248986799904268650675699999999964980899977863445565651775611764888-889824899
Q ss_pred EEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf 981000566665621005668888899996797023334027788986659999
Q gi|254780371|r 340 IVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393 (431)
Q Consensus 340 i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v 393 (431)
T Consensus 320 v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FNg~p~p~~V~v 373 (373)
T cd06828 320 VVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV 373 (373)
T ss_pred EECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf 983698988788846427899999999992986223755487779999978979