HHsearch alignment for GI: 254780371 and conserved domain: cd06828

>cd06828 PLPDE_III_DapDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.
Probab=100.00  E-value=0  Score=721.85  Aligned_cols=368  Identities=48%  Similarity=0.780  Sum_probs=351.7

Q ss_pred             CCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCC
Q ss_conf             49978997799999999999986144797899964107999999999973992898689998652212578431244477
Q gi|254780371|r   25 VQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGV  104 (431)
Q Consensus        25 ~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~  104 (431)
T Consensus         1 yGTP~yv~d~~~l~~~~~~l~~~~~~~~~~i~yAvKaN~~~~il~~l~~~g~g~dvaS~~El~~al~~G~~~~~Ii~~gp   80 (373)
T cd06828           1 YGTPLYVYDEATIRENYRRLKEAFSGPGFKICYAVKANSNLAILKLLAEEGLGADVVSGGELYRALKAGFPPERIVFTGN   80 (373)
T ss_pred             CCCCEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHCCEEEEECHHHHHHHHHCCCCHHHEEECCC
T ss_conf             99988998899999999999986045897899986227999999999985991899799999999984999545998176


Q ss_pred             CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             54201244442068723333220246768774113344215899872377867443332233444568871111345777
Q gi|254780371|r  105 GKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY  184 (431)
Q Consensus       105 ~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~  184 (431)
T Consensus        81 ~K~~~~i~~A~~~gv~~i~~Ds~~El~~i~~~~~~~~~~~~v~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~  160 (373)
T cd06828          81 GKSDEELELALELGILRINVDSLSELERLGEIAPELGKGAPVALRVNPGVDAGTHPYISTGGKDSKFGIPLEQALEAYRR  160 (373)
T ss_pred             CCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHH
T ss_conf             41137899999739856762999999999986276199854999988898877776231377532138999999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             64156322002335564156442048999999998876531026665268806873000266545531145655565421
Q gi|254780371|r  185 ASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASLIHQYF  264 (431)
Q Consensus       185 ~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i~~~~  264 (431)
T Consensus       161 ~~~~~~l~~~GlhfHvGS~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i~~~l  240 (373)
T cd06828         161 AKELPGLKLVGLHCHIGSQILDLEPFVEAAEKLLDLAAELRELGIDLEFLDLGGGLGIPYRDEDEPLDIEEYAEAIAEAL  240 (373)
T ss_pred             HHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             98579984688788647666887999999999999999999749986577436874645788889989999999999999


Q ss_pred             CCC-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf             024-----530344101112036632588876403468974220055300011001110246532222346777615899
Q gi|254780371|r  265 GNL-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHAD  339 (431)
Q Consensus       265 ~~~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~~~~~~~~~~~~  339 (431)
T Consensus       241 ~~~~~~~~~~~li~EPGR~lva~ag~lvt~V~~~k~~~~~~~~~~D~g~~~~~rP~ly~~~~~i~~~~~~-~~~~~~~~~  319 (373)
T cd06828         241 KELCEGGPDLKLIIEPGRYIVANAGVLLTRVGYVKETGGKTFVGVDAGMNDLIRPALYGAYHEIVPVNKP-GEGETEKVD  319 (373)
T ss_pred             HHHHCCCCCCEEEEECCHHHHCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCHHHCCCCCCEEECCCC-CCCCCEEEE
T ss_conf             9974248986799904268650675699999999964980899977863445565651775611764888-889824899


Q ss_pred             EEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEE
Q ss_conf             981000566665621005668888899996797023334027788986659999
Q gi|254780371|r  340 IVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV  393 (431)
Q Consensus       340 i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v  393 (431)
T Consensus       320 v~Gp~C~s~D~l~~~~~lp~l~~GD~l~~~~~GAY~~s~ss~FNg~p~p~~V~v  373 (373)
T cd06828         320 VVGPICESGDVFAKDRELPEVEEGDLLAIHDAGAYGYSMSSNYNSRPRPAEVLV  373 (373)
T ss_pred             EECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHCCCCCCCCCCCEEEC
T ss_conf             983698988788846427899999999992986223755487779999978979