HHsearch alignment for GI: 254780371 and conserved domain: cd06836
>cd06836 PLPDE_III_ODC_DapDC_like_1 Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Uncharacterized Proteins with similarity to Ornithine and Diaminopimelate Decarboxylases. This subfamily contains uncharacterized proteins with similarity to ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC). ODC and DapDC are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. DapDC participates in the last step of lysine biosynthesis, the conversion of meso-2,6-diaminoheptanedioate to L-lysine. Proteins in this subfamily may function as PLP-dependent decarbo
Probab=100.00 E-value=0 Score=649.74 Aligned_cols=365 Identities=27% Similarity=0.426 Sum_probs=328.0
Q ss_pred CCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEEECCCC
Q ss_conf 99789977999999999999861447978999641079999999999739928986899986522125784312444775
Q gi|254780371|r 26 QTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105 (431)
Q Consensus 26 gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii~~g~~ 105 (431)
T Consensus 2 ~~~~~vyD~~~i~~~~~~~~~afp~-~~~~~YAvKaN~~p~il~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii~~gp~ 80 (379)
T cd06836 2 HPAVGLYDLDGFRALVARLTAAFPA-PVLHTFAVKANPLVPVLRLLAEAGAGAEVASPGELELALAAGFPPERIVFDSPA 80 (379)
T ss_pred CCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHEEECCCC
T ss_conf 9858996299999999999985899-861899983389999999999849978973999999999859998998988998
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCH--HHH
Q ss_conf 42012444420687233332202467687741133-442158998723778674433322334445688711113--457
Q gi|254780371|r 106 KTIDEIDLALQSGIYCFNVESESELKTLNQRAVSL-GKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIH--SLY 182 (431)
Q Consensus 106 k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~-~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~--~~~ 182 (431)
T Consensus 81 K~~~~l~~A~~~Gv-~i~vDs~~El~~i~~l~~~~~~~~~~i~lRinp~~~~~~~~~~~~~~~~sKFG~~~~~~~~~~~~ 159 (379)
T cd06836 81 KTRAELREALELGV-AINIDNFQELERIDALVAEFKEASSRIGLRVNPQVGAGKIGALSTATATSKFGVALEDGARDEII 159 (379)
T ss_pred CCHHHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999997399-20348989999999999862997525899971687766754344689989858881477899999
Q ss_pred HHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHC-CC-CCCCEEEECCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 77641563220023355641564420489999999988765310-26-66526880687300026654553114565556
Q gi|254780371|r 183 AYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRS-NG-HNIQHIDVGGGLGIAYHSDHRPPSSSDYASLI 260 (431)
Q Consensus 183 ~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~~-~g-~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~i 260 (431)
T Consensus 160 ~~~~--~~~~l~GlhfHvGSq~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ldiGGGf~v~y~~~~~~~~~~~~~~~i 237 (379)
T cd06836 160 DAFA--RRPWLNGLHVHVGSQGCELSLLAEGIRRVVDLAEEINRRVGRRQITRIDIGGGLPVNFESEDITPTFADYAAAL 237 (379)
T ss_pred HHHH--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 9982--67970068987788888989999999999999999988608776326503787454678888898999999999
Q ss_pred HHHHCCC---CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCCCC----CCCCC
Q ss_conf 5421024---5303441011120366325888764034689742200553000110011102465322223----46777
Q gi|254780371|r 261 HQYFGNL---QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVN----PAGDR 333 (431)
Q Consensus 261 ~~~~~~~---~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~~~i~~~~~----~~~~~ 333 (431)
T Consensus 238 ~~~l~~~f~~~~~li~EPGR~lva~ag~ll~~V~~vK~~~~~~~~i~d~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T cd06836 238 KAAVPELFDGRYQLVTEFGRSLLAKCGTIVSRVEYTKSSGGRRIAITHAGAQVATRTAYAPDDWPLRVTVFDANGEPKTG 317 (379)
T ss_pred HHHHHHHCCCCCEEEECCCCEEECCCEEEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 99999751668568860553230461599999999997398689999516655531002433374467840677786789
Q ss_pred CEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHCCCCCCCCCEEEEEE
Q ss_conf 6158999810005666656210056688888999967970233340277889866599998
Q gi|254780371|r 334 LHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVN 394 (431)
Q Consensus 334 ~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~s~fn~~p~p~~v~v~ 394 (431)
T Consensus 318 ~~~~~~v~Gp~C~~~D~l~~~~~lP~l~~GD~l~i~~~GAY~~s~~s~fN~~prPav~~v~ 378 (379)
T cd06836 318 PEVVTDVAGPCCFAGDVLAKERALPPLEPGDYVAVHDTGAYYFSSHSSYNSLPRPAVYGVR 378 (379)
T ss_pred CEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCHHHHHCCCCCCCCCCEEEEE
T ss_conf 8349999866878587986364888899999999879770506561888799888289972