HHsearch alignment for GI: 254780371 and conserved domain: cd06839
>cd06839 PLPDE_III_Btrk_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Btrk Decarboxylase. This subfamily is composed of Bacillus circulans BtrK decarboxylase and similar proteins. These proteins are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases, eukaryotic ornithine decarboxylases and diaminopimelate decarboxylases. BtrK is presumed to function as a PLP-dependent decarboxylase involved in the biosynthesis of the aminoglycoside antibiotic butirosin. Homodimer formation and the presence of the PLP cofactor may be required for catalytic activity.
Probab=100.00 E-value=0 Score=697.28 Aligned_cols=370 Identities=31% Similarity=0.535 Sum_probs=339.5
Q ss_pred HHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCEE
Q ss_conf 99974997899779999999999998614479789996410799999999997399289868999865221257843124
Q gi|254780371|r 21 LAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIV 100 (431)
Q Consensus 21 La~~~gTP~yV~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN~~~~il~~l~~~G~g~dv~S~~El~~al~~G~~~~~Ii 100 (431)
T Consensus 1 La~~~GTP~yv~d~~~i~~~~~~l~~alp~-~~~i~YAvKaN~~~~vl~~l~~~G~g~DvaS~~El~~al~~G~~~~~Ii 79 (382)
T cd06839 1 LADAYGTPFYVYDRDRVRERYAALRAALPP-AIEIYYSLKANPNPALVAHLRQLGDGAEVASAGELALALEAGVPPEKIL 79 (382)
T ss_pred CCHHHCCCEEEEEHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHCCCCCCCEE
T ss_conf 932009988998799999999999985899-9759999704899999999997499099989999999998599953107
Q ss_pred ECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 44775420124444206872333322024676877411334421589987237786744333223344456887111134
Q gi|254780371|r 101 FSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHS 180 (431)
Q Consensus 101 ~~g~~k~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~ 180 (431)
T Consensus 80 ~~gp~K~~~~l~~a~~~gv~~i~~Ds~~El~~i~~~a~~~~~~~~v~lRinp~~~~~~~-~~~~~g~~skFGi~~~~~~~ 158 (382)
T cd06839 80 FAGPGKSDAELRRAIEAGIGTINVESLEELERIDALAEEHGVVARVALRINPDFELKGS-GMKMGGGPSQFGIDVEELPA 158 (382)
T ss_pred EECCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC-CCCCCCCCCCCCCCHHHHHH
T ss_conf 61687888999999983995764386799999999998639974699998158877877-61447885445899999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-CCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 577764156322002335564156442048999999998876531-0266652688068730002665455311456555
Q gi|254780371|r 181 LYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLR-SNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYASL 259 (431)
Q Consensus 181 ~~~~~~~~~~l~l~GlH~H~GS~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ldiGGGf~i~y~~~~~~~~~~~~~~~ 259 (431)
T Consensus 159 ~~~~~~~~~~l~~~Glh~H~GS~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~idiGGGf~v~y~~~~~~~d~~~~~~~ 238 (382)
T cd06839 159 VLARIAALPNLRFVGLHIYPGTQILDADALIEAFRQTLALALRLAEELGLPLEFLDLGGGFGIPYFPGETPLDLEALGAA 238 (382)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999846898378889835777789799999999999999998986598851775058737678898999899999999
Q ss_pred HHHHHCCC-----CCEEEEEECCEECCCCCEEEEEEEEECCCCCCCCEEECCCCCCCCCCHHHCCC-----CCCCCCCCC
Q ss_conf 65421024-----53034410111203663258887640346897422005530001100111024-----653222234
Q gi|254780371|r 260 IHQYFGNL-----QCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAY-----HEINYIVNP 329 (431)
Q Consensus 260 i~~~~~~~-----~~~l~~EPGR~lva~ag~ll~~V~~vK~~~~~~~~~vD~g~~~~~~p~~~~~~-----~~i~~~~~~ 329 (431)
T Consensus 239 i~~~~~~~~~~~~~~~l~~EPGR~lva~ag~lv~~V~~~K~~~~~~~~~~D~g~~~~~~~~~~~~~~~~~~~p~~~~-~~ 317 (382)
T cd06839 239 LAALLAELGDRLPGTRVVLELGRYLVGEAGVYVTRVLDRKVSRGETFLVTDGGMHHHLAASGNFGQVLRRNYPLAIL-NR 317 (382)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCEEECCCEEEEEEEEEEEECCCCEEEEEECCCCCCCHHHCCHHHHHCCCCCEEEC-CC
T ss_conf 99999986420589689991350032157179999999983599579999075334412322325653147607824-78
Q ss_pred CCCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHH-CCCCCCCCCEEEEE
Q ss_conf 67776158999810005666656210056688888999967970233340-27788986659999
Q gi|254780371|r 330 AGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS-GTYNSRLLIPEIMV 393 (431)
Q Consensus 330 ~~~~~~~~~~i~G~~C~~~D~l~~~~~lp~l~~GD~l~i~~~GAY~~s~~-s~fn~~p~p~~v~v 393 (431)
T Consensus 318 ~~~~~~~~~~v~Gp~C~s~D~l~~~~~lp~l~~GD~L~i~~~GAY~~s~s~~~fn~~p~PaeVlV 382 (382)
T cd06839 318 MGGEERETVTVVGPLCTPLDLLGRNVELPPLEPGDLVAVLQSGAYGLSASPLAFLSHPAPAEVLV 382 (382)
T ss_pred CCCCCEEEEEEECCCCCCCCEECCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 88898169999898888877987054678899999999959866177750301369999888879