HHsearch alignment for GI: 254780371 and conserved domain: pfam01168

>pfam01168 Ala_racemase_N Alanine racemase, N-terminal domain.
Probab=99.53  E-value=8.9e-13  Score=106.92  Aligned_cols=183  Identities=21%  Similarity=0.364  Sum_probs=137.6

Q ss_pred             EEHHHHHHHHHHHHHHCCCCCCEEEEEEECC-CCHH---HHHHHHHCCC-CEEEECHHHHHHHHHCCCCCCCEEECCCCC
Q ss_conf             7799999999999986144797899964107-9999---9999997399-289868999865221257843124447754
Q gi|254780371|r   32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKAN-SNQA---VIKTLAHLGS-GLDIVSEGELRRALAAPVPAERIVFSGVGK  106 (431)
Q Consensus        32 ~d~~~i~~n~~~l~~a~~~~~~~i~yAvKaN-~~~~---il~~l~~~G~-g~dv~S~~El~~al~~G~~~~~Ii~~g~~k  106 (431)
T Consensus         1 Idl~~l~~Ni~~i~~~~~~-~~~l~aVvK~nayG~g~~~i~~~~-~~g~~~f~v~~~~Ea~~lr~~~~~~-~Il~l~~~-   76 (216)
T pfam01168         1 IDLDALRHNIRALRERAGR-PVKLMAVVKANAYGHGAVRVARAL-AAGADGFGVATLQEALELREAGITA-PILVLGFF-   76 (216)
T ss_pred             CCHHHHHHHHHHHHHHCCC-CCEEEEEECCCCCCCCHHHHHHHH-HHCCCCEEEEEHHHHHHHHHHCCCC-CEEEECCC-
T ss_conf             9779999999999985699-998999977777786699999999-8089855980099999999818987-07773689-


Q ss_pred             CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             20124444206872333322024676877411334421589987237786744333223344456887111134577764
Q gi|254780371|r  107 TIDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS  186 (431)
Q Consensus       107 ~~~~l~~ai~~gv~~i~vDs~~el~~l~~~a~~~~~~~~I~lRinp~~~~~~~~~~~tg~~~sKFGi~~~~~~~~~~~~~  186 (431)
T Consensus        77 ~~~~~~~~~~~~~-~~~v~s~~~l~~l~~~~~~~~~~~~v~l~vd------------tGm--~R~G~~~~~~~~~~~~i~  141 (216)
T pfam01168        77 PPEELALAAEYDL-IPTVDSLEQAEALSAAAAKLGRPLRVHLKVD------------TGM--GRLGFTPEELPALAEALA  141 (216)
T ss_pred             CHHHHHHHHHCCC-EEEECCHHHHHHHHHHHHHCCCCEEEEEEEE------------ECC--CCCCCCHHHHHHHHHHHH
T ss_conf             9699999998597-8997889999999999998599808999997------------478--768879999999999985


Q ss_pred             HCCCCCHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHHCCCCCCCEEEECC
Q ss_conf             15632200233556415644204899-99999988765310266652688068
Q gi|254780371|r  187 TLPGVKISGVDMHIGSQIDQIESFHK-AFKLLRDLTQQLRSNGHNIQHIDVGG  238 (431)
Q Consensus       187 ~~~~l~l~GlH~H~GS~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~ldiGG  238 (431)
T Consensus       142 -~~~l~~~Gi~tH~~~~-d~~~~~~~~q~~~f~~~~~~l~~~~---~~~s~~n  189 (216)
T pfam01168       142 -LPGLRLEGLMTHFACA-DEPDATNRAQLARFRELADALEAAG---PVLSLGN  189 (216)
T ss_pred             -CCCCCEEEEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHCCC---CEEEHHC
T ss_conf             -5999678999505887-8975899999999999999865689---9985116