PSIBLAST alignment of GI: 254780371 and protein with PDB id: 2qgh
>gi|189095960|pdb|2QGH|A Chain A, Crystal Structure Of Diaminopimelate Decarboxylase From Helicobacter Pylori Complexed With L-Lysine Length = 396
Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats.
Identities = 158/396 (39%), Positives = 231/396 (58%), Gaps = 8/396 (2%)
Query: 19 EKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGL 78
E+L +TPFY Y I++ +L + AF G +++CYALKANSN +++ LAHL SG
Sbjct: 3 EELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLESGA 62
Query: 79 DIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQRAV 138
D VS GE++RAL A + RIVFSGVGK+ EI+ AL+ I NVES ELKT+ A
Sbjct: 63 DCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIETIAQ 122
Query: 139 SLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDM 198
SLG KA I+ R+NP+I+A TH ISTG KE+KFG+ + ++ +A ++ V
Sbjct: 123 SLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVSVHF 182
Query: 199 HIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSDYAS 258
HIGSQ+ +E +A + + + + L + G +++ DVGGG+G++Y + DYA
Sbjct: 183 HIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGVSY-ENEETIKLYDYAQ 241
Query: 259 LIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYD 318
I L II EPGR +VA+ G L+T+V+ KK +K FVI+D MNDF+RP+LY
Sbjct: 242 GILNALQGLDLTIICEPGRSIVAESGELITQVLYEKK--NKRFVIVDAGMNDFLRPSLY- 298
Query: 319 AYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQ 378
+ + D+VGP+CE+ D + + PGD + IEK GAYG+
Sbjct: 299 ---HAKHAIRVITPSEISPCDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYGSSM 355
Query: 379 SGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELD 414
+ YNSR + E+ + + +IR R ++L L+
Sbjct: 356 ASQYNSRPKLLELALED-KIRVIRKREALEDLWRLE 390