RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780371|ref|YP_003064784.1| diaminopimelate decarboxylase
protein [Candidatus Liberibacter asiaticus str. psy62]
(431 letters)
>gnl|CDD|162174 TIGR01048, lysA, diaminopimelate decarboxylase. This family
consists of diaminopimelate decarboxylase, an enzyme
which catalyzes the conversion of diaminopimelic acid
into lysine during the last step of lysine biosynthesis.
Length = 417
Score = 463 bits (1193), Expect = e-131
Identities = 185/415 (44%), Positives = 262/415 (63%), Gaps = 6/415 (1%)
Query: 6 YFEGSLHAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQ 65
+G L E V L +LA TP Y Y I + + + AF G ++VCYA+KANSN
Sbjct: 4 NKDGELFIEGVDLLELAEEFGTPLYVYDEETIRERFRAYKEAFGGAYSLVCYAVKANSNL 63
Query: 66 AVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVE 125
A+++ LA LGSG D+VS GEL RALAA P E+IVF+G GK+ E++ AL+ GI C NV+
Sbjct: 64 ALLRLLAELGSGFDVVSGGELYRALAAGFPPEKIVFNGNGKSRAELERALELGIRCINVD 123
Query: 126 SESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYA 185
SESEL+ LN+ A LGKKA ++ RVNP ++A TH ISTG ++ KFGI + + Y YA
Sbjct: 124 SESELELLNEIAPELGKKARVSLRVNPGVDAKTHPYISTGLEDSKFGIDVEEALEAYLYA 183
Query: 186 STLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYH 245
LP +++ G+ HIGSQI + F +A + + DL ++L++ G +++ +D+GGGLGI Y
Sbjct: 184 LQLPHLELVGIHCHIGSQITDLSPFVEAAEKVVDLVEELKAEGIDLEFLDLGGGLGIPYT 243
Query: 246 SDHRPPSSSDYASLIHQYF-----GNLQCKIILEPGRFLVADVGILVTKVISIKKSADKT 300
+ PP +YA I L K+ILEPGR +VA+ G+L+T+V +K+ +
Sbjct: 244 PEEEPPDPEEYAQAILAALEGYADLGLDPKLILEPGRSIVANAGVLLTRVGFVKEVGSRN 303
Query: 301 FVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALP 360
FVI+D MND +RP LY AYH I + N D AD+VGP+CE+GD +A +R++
Sbjct: 304 FVIVDAGMNDLIRPALYGAYHHI-IVANRTNDAPTEVADVVGPLCESGDVLARDRELPEV 362
Query: 361 RPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELDS 415
PGDLL + GAYGA S YNSR E++V+G Q +IR R T+++L+ L+
Sbjct: 363 EPGDLLAVFDAGAYGASMSSNYNSRPRPAEVLVDGGQARLIRRRETYEDLLALEV 417
>gnl|CDD|178152 PLN02537, PLN02537, diaminopimelate decarboxylase.
Length = 410
Score = 270 bits (692), Expect = 5e-73
Identities = 132/403 (32%), Positives = 220/403 (54%), Gaps = 5/403 (1%)
Query: 11 LHAENVSLEK-LAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIK 69
L+ E + ++ + V + PFY YS I +NY + A +G+ +++ YA+KAN+N +++
Sbjct: 1 LYCEGLRVQDIMESVEKRPFYLYSKPQITRNYEAYKEALEGLRSIIGYAIKANNNLKILE 60
Query: 70 TLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESE 129
L LG G +VS ELR AL A R +F+G GK ++++ LA Q G++ NV+SE +
Sbjct: 61 HLRELGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKLLEDLVLAAQEGVF-VNVDSEFD 119
Query: 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLP 189
L+ + + A GKK + R+NPD++ H ++TG K KFGI ++ P
Sbjct: 120 LENIVEAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKAHP 179
Query: 190 G-VKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAY-HSD 247
+K+ G H+GS I +++ F A L+ + ++R+ G + ++++GGGLGI Y H+
Sbjct: 180 NELKLVGAHCHLGSTITKVDIFRDAAVLMVNYVDEIRAQGFELSYLNIGGGLGIDYYHAG 239
Query: 248 HRPPSSSDYASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVA 307
P+ D + + + +I+EPGR L+A+ V +V +K + K F+++D +
Sbjct: 240 AVLPTPRDLIDTVRELVLSRDLTLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGS 299
Query: 308 MNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLY 367
M + +RP+LYDAY I + P D D+VGP+CE+ DF+ +R++ P G L
Sbjct: 300 MAELIRPSLYDAYQHIELVSPPPPDAEVSTFDVVGPVCESADFLGKDRELPTPPKGAGLV 359
Query: 368 IEKTGAYGAVQSGTYNSRLLIPEIMV-NGSQFHIIRPRMTFQE 409
+ GAY + TYN ++ PE V IR TF +
Sbjct: 360 VHDAGAYCMSMASTYNLKMRPPEYWVEEDGSITKIRHAETFDD 402
>gnl|CDD|183006 PRK11165, PRK11165, diaminopimelate decarboxylase; Provisional.
Length = 420
Score = 224 bits (572), Expect = 5e-59
Identities = 140/435 (32%), Positives = 204/435 (46%), Gaps = 65/435 (14%)
Query: 17 SLEKLAHVVQTPFYCYSTTAIEK--NYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHL 74
+L +L TP + Y I + L FD ++ +A KA SN +++ +
Sbjct: 16 NLLRLPAEYGTPLWVYDADIIRRRIAQL---RQFD----VIRFAQKACSNIHILRLMREQ 68
Query: 75 GSGLDIVSEGELRRALAA-----PVPAERIVFSGVGKTIDEIDLA-----LQSGIYCFNV 124
G +D VS GE+ RALAA P E IVF T D ID A ++ I N
Sbjct: 69 GVKVDAVSLGEIERALAAGYKPGTEPDE-IVF-----TADVIDRATLARVVELKI-PVNA 121
Query: 125 ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAY 184
S L L Q + + R+NP +K +TG + K GI + + A
Sbjct: 122 GSIDMLDQLGQVS----PGHRVWLRINPGFGHGHSQKTNTGGENSKHGIWHEDLPAALAV 177
Query: 185 ASTLPGVKISGVDMHIGSQID--QIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242
G+K+ G+ MHIGS +D +E A + +Q+ G +I+ I GGGL I
Sbjct: 178 IQRY-GLKLVGIHMHIGSGVDYGHLEQVCGA------MVRQVIELGQDIEAISAGGGLSI 230
Query: 243 AYHSDHRPPSSSDYASL-------IHQYFGNLQCKIILE--PGRFLVADVGILVTKVISI 293
Y P + Y L I ++ G + LE PGRFLVA+ G+LV +V ++
Sbjct: 231 PYREGEEPVDTEHYFGLWDAARKRIARHLG---HPVKLEIEPGRFLVAESGVLVAQVRAV 287
Query: 294 KKSADKTFVILDVAMNDFMRPTLYDAYHEINYIVNPAGDRLHIHADIV-----GPICETG 348
K+ + FV++D ND MRP +Y +YH I+ + A R A V GP+CE+G
Sbjct: 288 KQMGSRHFVLVDAGFNDLMRPAMYGSYHHISVL--AADGRSLEEAPTVDTVVAGPLCESG 345
Query: 349 D-F------IALNRKIALPRPGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMVNGSQFHII 401
D F + R + + GD L TGAYGA S YNSR L+PE++ + Q +I
Sbjct: 346 DVFTQQEGGVVETRALPQVQVGDYLVFHDTGAYGASMSSNYNSRPLLPEVLFDNGQARLI 405
Query: 402 RPRMTFQELIELDSI 416
R R T +EL+ L+ +
Sbjct: 406 RRRQTIEELLALELL 420
>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
decarboxylase protein; Provisional.
Length = 861
Score = 216 bits (553), Expect = 7e-57
Identities = 120/392 (30%), Positives = 187/392 (47%), Gaps = 31/392 (7%)
Query: 12 HAENVSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTL 71
HAE L L+ +P Y Y + A +D YA+KAN + A+++TL
Sbjct: 489 HAERARLLTLSDA-GSPCYVYHLPTVRARARAL-AALAAVDQRF-YAIKANPHPAILRTL 545
Query: 72 AHLGSGLDIVSEGELRRALAA-P-VPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESE 129
G G + VS GELRR P + ER++F+ E + A G+ +++
Sbjct: 546 EEEGFGFECVSIGELRRVFELFPELSPERVLFTPNFAPRAEYEAAFALGVT-VTLDNVEP 604
Query: 130 LKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLP 189
L+ L + + R++P H+K+ TG KE KFG+ +I A TL
Sbjct: 605 LR----NWPELFRGREVWLRIDPGHGDGHHEKVRTGGKESKFGLSQTRIDEFVDLAKTL- 659
Query: 190 GVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHR 249
G+ + G+ H+GS I+ E + + L ++ ++ ID+GGGLGI +
Sbjct: 660 GITVVGLHAHLGSGIETGEHWRRMADELASFARRFPD----VRTIDLGGGLGIPESAGDE 715
Query: 250 PPSSSDYASLIH----QYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILD 305
P + + Q+ ++ +EPGR+LVA+ G+L+ +V +K+ V L+
Sbjct: 716 PFDLDALDAGLAEVKAQH---PGYQLWIEPGRYLVAEAGVLLARVTQVKEKDGVRRVGLE 772
Query: 306 VAMNDFMRPTLYDAYHEINYIVNPAGDRLH----IHADIVGPICETGDFIALNRKIALPR 361
MN +RP LY AYHE IVN + RL AD+VGPICE+ D + R++
Sbjct: 773 TGMNSLIRPALYGAYHE---IVNLS--RLDEPAAGTADVVGPICESSDVLGKRRRLPATA 827
Query: 362 PGDLLYIEKTGAYGAVQSGTYNSRLLIPEIMV 393
GD++ I GAYG S TYN R E+++
Sbjct: 828 EGDVILIANAGAYGYSMSSTYNLREPAREVVL 859
>gnl|CDD|132143 TIGR03099, dCO2ase_PEP1, pyridoxal-dependent decarboxylase,
exosortase system type 1 associated. The sequences in
this family contain the pyridoxal binding domain
(pfam02784) and C-terminal sheet domain (pfam00278) of a
family of Pyridoxal-dependent decarboxylases.
Characterized enzymes in this family decarboxylate
substrates such as ornithine, diaminopimelate and
arginine. The genes of the family modeled here, with the
exception of those observed in certain Burkholderia
species, are all found in the context of
exopolysaccharide biosynthesis loci containing the
exosortase/PEP-CTERM protein sorting system. More
specifically, these are characteristic of the type 1
exosortase system represented by the Genome Property
GenProp0652. The substrate of these enzymes may be a
precursor of the carrier or linker which is hypothesized
to release the PEP-CTERM protein from the exosortase
enzyme. These enzymes are apparently most closely
related to the diaminopimelate decarboxylase modeled by
TIGR01048 which may suggest a similarity (or identity)
of substrate.
Length = 398
Score = 188 bits (479), Expect = 2e-48
Identities = 121/397 (30%), Positives = 179/397 (45%), Gaps = 45/397 (11%)
Query: 9 GSLHAENVSLEKLAHVV-QTPFYCYSTTAIEKNYLTFSNAF-DGMDTMVCYALKANSNQA 66
G L + L +LA TPFY Y + + A + + + YA+KAN A
Sbjct: 6 GCLCVGGIPLTELAARAGGTPFYAYDRGLVSERVAALRKALPEELA--IHYAVKANPMPA 63
Query: 67 VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVES 126
++ +A L G D+ S GEL AL I F+G GKT E+ AL +G+ NVES
Sbjct: 64 LLAHMAPLVDGFDVASAGELAVALDTGYDPGCISFAGPGKTDAELRRALAAGV-LINVES 122
Query: 127 ESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYAS 186
EL L + +LG +A +A RVNPD + G +FGI Q+ + A+
Sbjct: 123 LRELNRLAALSEALGLRARVAVRVNPDFELKG-SGMKMGGGAKQFGIDAEQVPAALAFIK 181
Query: 187 TLPGVKISGVDMHIGSQ-IDQ---IESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGI 242
+ G + GSQ ++ IE+ K L L S ++ I++GGG GI
Sbjct: 182 AA-DLDFQGFHIFAGSQNLNAEAIIEAQAKTLALALRLA---ESAPAPVRVINIGGGFGI 237
Query: 243 AYHSDHRPPSSSDYASLIHQYFGNL-----QCKIILEPGRFLVADVGILVTKVISIKKSA 297
Y + P + + + F L + +I+LE GR+LV + GI V +VI K S
Sbjct: 238 PYFPGNPPLDLAPVGAALAALFARLRDALPEVEILLELGRYLVGEAGIYVCRVIDRKISR 297
Query: 298 DKTFVILDVAMNDFMRPTLYDAYHEI------------NY---IVNPAGDRLHIHADIVG 342
+TF++ D ++ H + NY I N G + A IVG
Sbjct: 298 GETFLVTDGGLH-----------HHLSASGNFGQVIRRNYPVVIGNRIGGAVREIASIVG 346
Query: 343 PICETGDFIALNRKIALPRPGDLLYIEKTGAYGAVQS 379
P+C D +A + + PGDL+ I ++GAYGA S
Sbjct: 347 PLCTPLDLLAEKGTLPVAEPGDLVVIFQSGAYGASAS 383
>gnl|CDD|162279 TIGR01273, speA, arginine decarboxylase, biosynthetic. A distinct
biodegradative form is also pyridoxal
phosphate-dependent but is not similar in sequence.
Length = 624
Score = 86.2 bits (214), Expect = 2e-17
Identities = 77/263 (29%), Positives = 118/263 (44%), Gaps = 33/263 (12%)
Query: 57 YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALA-APVPAERIVFSGVGKTIDEI 111
Y +K N +++V++ + G GL+ S+ EL A+A A P IV +G K + I
Sbjct: 95 YPIKVNQHRSVVEDIVAFGKGLNYGLEAGSKPELLAAMAYATKPGAPIVCNGY-KDREYI 153
Query: 112 DLALQSGIYCFNV----ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKK 167
+LAL NV E SEL + + A LG K + R + + K S+G +
Sbjct: 154 ELALIGRKLGHNVFIVIEKLSELDLVIEEAKKLGVKPKLGLRARL-ASKGSGKWASSGGE 212
Query: 168 EDKFGIPIHQIHS---LYAYASTLPGVKISGVDMHIGSQIDQIESFHKAFKLLRDLTQQL 224
+ KFG+ QI L L +K+ + HIGSQI I+ K + +L
Sbjct: 213 KSKFGLSATQILEVVRLLEQNGLLDCLKL--LHFHIGSQISNIDDVKKGVREAARFYCEL 270
Query: 225 RSNGHNIQHIDVGGGLGIAYH-SDHRPPSSSDYASLIHQYFGNL------QCK------- 270
R G I ++DVGGGLG+ Y + S +Y + +Y ++ C
Sbjct: 271 RKLGAKITYVDVGGGLGVDYDGTSSSSDCSVNYG--LEEYAADVVQALREICDEKGVPHP 328
Query: 271 -IILEPGRFLVADVGILVTKVIS 292
II E GR + A +L+T V+
Sbjct: 329 VIITESGRAITAHHAVLITNVLG 351
>gnl|CDD|180035 PRK05354, PRK05354, arginine decarboxylase; Provisional.
Length = 634
Score = 61.7 bits (151), Expect = 4e-10
Identities = 76/285 (26%), Positives = 117/285 (41%), Gaps = 79/285 (27%)
Query: 57 YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALA-APVPAERIVFSGVGKTIDEI 111
Y +K N + V++ + G GL+ S+ EL LA A P IV +G K + I
Sbjct: 102 YPIKVNQQRRVVEEIVASGKPYNLGLEAGSKPELMAVLALAGDPGALIVCNGY-KDREYI 160
Query: 112 DLAL---QSGIYCFNV-ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKIST--- 164
LAL + G F V E SEL+ + + A LG K + R ++++
Sbjct: 161 RLALIGRKLGHKVFIVIEKLSELELILEEAKELGVKPRLGVRA----------RLASQGS 210
Query: 165 GKKED------KFGIPIHQIHSLYAYASTLPGVKISGVDM---------------HIGSQ 203
GK + KFG+ ++ + V+ H+GSQ
Sbjct: 211 GKWQSSGGEKSKFGLSATEV--------------LEAVERLREAGLLDCLQLLHFHLGSQ 256
Query: 204 IDQIESFHKAFKLLRDLTQ---QLRSNGHNIQHIDVGGGLGIAYH-SDHRPPSS-----S 254
I I A +R+ + +LR G IQ++DVGGGLG+ Y + + SS
Sbjct: 257 IANIRDIKTA---VREAARFYVELRKLGAPIQYLDVGGGLGVDYDGTRSQSDSSVNYSLQ 313
Query: 255 DYASLIHQYFGNLQCK--------IILEPGRFLVADVGILVTKVI 291
+YA+ + + C+ II E GR L A +LV V+
Sbjct: 314 EYANDVVYTLKEI-CEEHGVPHPTIISESGRALTAHHAVLVFNVL 357
>gnl|CDD|178058 PLN02439, PLN02439, arginine decarboxylase.
Length = 559
Score = 52.8 bits (127), Expect = 2e-07
Identities = 66/277 (23%), Positives = 111/277 (40%), Gaps = 48/277 (17%)
Query: 57 YALKANSNQAVIKTLAHLGS----GLDIVSEGELRRALAA---PVPAERIVFSGVGKTID 109
+ +K N ++ +++ + GS GL+ S+ EL A++ P ++ +G K +
Sbjct: 37 FPVKCNQDRFLVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGSPDAFLICNGY-KDAE 95
Query: 110 EIDLALQS---GIYCFNV-ESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTG 165
+ LAL + G+ V E E EL + + + LG + I R + H ++G
Sbjct: 96 YVSLALLARKLGLNTVIVLEQEEELDLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSG 155
Query: 166 KKEDKFGIPIHQIHSLYAYASTLPGVKISGVDM---------HIGSQIDQIESFHKAFKL 216
+K KFG+ +I + K+ M HIGSQI
Sbjct: 156 EK-GKFGLTATEIVRVVR--------KLRKEGMLDCLQLLHFHIGSQIPSTSLLKDGVSE 206
Query: 217 LRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSD---------YASLIHQYFGNL 267
+ +L G ++ ID+GGGLGI Y SSD YA+ + ++
Sbjct: 207 AAQIYCELVRLGAPMRVIDIGGGLGIDYDGSKS--GSSDMSVAYSLEEYANAVVAAVRDV 264
Query: 268 -------QCKIILEPGRFLVADVGILVTKVISIKKSA 297
I E GR LV+ +L+ + +S K
Sbjct: 265 CDRKGVKHPVICSESGRALVSHHSVLIFEAVSASKRG 301
>gnl|CDD|162173 TIGR01047, nspC, carboxynorspermidine decarboxylase. This protein
is related to diaminopimelate decarboxylase. It is the
last enzyme in norspermidine biosynthesis by an unusual
pathway shown in Vibrio alginolyticus.
Length = 380
Score = 35.5 bits (82), Expect = 0.024
Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 21/148 (14%)
Query: 270 KIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPTLYDAYH-EINYIVN 328
++ILEPG + G LV V+ I ++ +K ILDV+ M TL Y + +
Sbjct: 228 QVILEPGEAIGWQTGFLVASVVDIVEN-EKKIAILDVSFEAHMPDTLEMPYRPSVLGASD 286
Query: 329 PAGDRLHIHAD--------IVGPICETGDFIALNRKIALPRP---GDLLYIEKTGAYGAV 377
PA + + G C GD + + A P GD L Y V
Sbjct: 287 PATRENEEISLKEGQFSYVLGGCTCLAGDVMG---EYAFDEPLKVGDKLVFLDMIHYTMV 343
Query: 378 QSGTYNSRLLIPEIMV---NGSQFHIIR 402
++ T+N + +P + NG +F IR
Sbjct: 344 KNTTFNG-VKLPSLGCLRANG-EFQKIR 369
>gnl|CDD|168352 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 31.3 bits (71), Expect = 0.44
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 90 LAAPVPAERIVFSGVGKTIDEIDL 113
L APVPA + V + G T D+IDL
Sbjct: 314 LNAPVPAAKKVLAKAGLTKDDIDL 337
>gnl|CDD|151018 pfam10441, Urb2, Urb2/Npa2 family. This family includes the Urb2
protein from yeast that are involved in ribosome
biogenesis.
Length = 220
Score = 29.6 bits (67), Expect = 1.6
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 104 VGKTID-EIDLALQSGIYC-FNVESESELKTLN 134
+G E+ AL GIY +V SESEL+ LN
Sbjct: 162 LGVGFPPEVKEALTPGIYSILDVLSESELQALN 194
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 90 LAAPVPAERIVFSGVGKTIDEIDL 113
L AP+PA R G +ID+ID+
Sbjct: 279 LTAPIPATRYALEKTGLSIDDIDV 302
>gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional.
Length = 330
Score = 29.2 bits (66), Expect = 2.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 73 HLGSGLDIVSEGELRRALAAPVPAERI 99
H +G+DI +GE+RR AERI
Sbjct: 55 HERAGVDIPVDGEMRREEMVEYFAERI 81
>gnl|CDD|183871 PRK13146, hisH, imidazole glycerol phosphate synthase subunit HisH;
Provisional.
Length = 209
Score = 28.6 bits (65), Expect = 3.4
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 67 VIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105
K L G+G D+V + AA +R+V GVG
Sbjct: 17 AAKALERAGAGADVVVTADPDAVAAA----DRVVLPGVG 51
>gnl|CDD|178827 PRK00053, alr, alanine racemase; Reviewed.
Length = 363
Score = 28.2 bits (64), Expect = 4.1
Identities = 35/189 (18%), Positives = 68/189 (35%), Gaps = 37/189 (19%)
Query: 50 GMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEG-ELRRA-LAAPVPAERIVFSGVGKT 107
G + L+A ++ + TL E ELR A + AP+ ++ G
Sbjct: 42 GAVEVAKTLLEAGADGFGVATL----------EEALELREAGITAPI----LILGGFF-P 86
Query: 108 IDEIDLALQSGIYCFNVESESELKTLNQRAVSLGKKAPIAFRVNPDINANTHKKISTGKK 167
+++ L + + V S +L+ L + LGK + H KI TG
Sbjct: 87 AEDLPLIIAYNLT-TAVHSLEQLEALEK--AELGKPLKV------------HLKIDTGM- 130
Query: 168 EDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIGSQIDQIES--FHKAFKLLRDLTQQLR 225
+ G+ + + P V++ G+ H + D+ ++ + L
Sbjct: 131 -HRLGVRPEEAEAALERLLACPNVRLEGIFSHFATA-DEPDNSYTEQQLNRFEAALAGLP 188
Query: 226 SNGHNIQHI 234
G ++H+
Sbjct: 189 GKGKPLRHL 197
>gnl|CDD|165268 PHA02962, PHA02962, hypothetical protein; Provisional.
Length = 722
Score = 28.0 bits (62), Expect = 5.4
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 142 KKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISGVDMHIG 201
KKA + + N + H++ F IPI +I L + + +P + I
Sbjct: 435 KKARSFLSIKDNYNIDFHEEFDIIDLPRSFNIPIKEIADLKEFNNIIPFISDKSYKFKIA 494
Query: 202 SQI 204
SQ+
Sbjct: 495 SQL 497
>gnl|CDD|181272 PRK08180, PRK08180, feruloyl-CoA synthase; Reviewed.
Length = 614
Score = 27.9 bits (63), Expect = 5.6
Identities = 25/95 (26%), Positives = 29/95 (30%), Gaps = 26/95 (27%)
Query: 77 GLDIVSEGEL-RRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ 135
GL +G RALAA VPA+ V + G + L T
Sbjct: 148 GLVFADDGAAFARALAAVVPADVEVVAVRGAVPGRAATPF-----------AALLATPPT 196
Query: 136 RAVSLGKKAPIAFRVNPDINANTHKKI-----STG 165
AV V PD T K STG
Sbjct: 197 AAV-----DAAHAAVGPD----TIAKFLFTSGSTG 222
>gnl|CDD|181315 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 27.5 bits (62), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 90 LAAPVPAERIVFSGVGKTIDEIDL 113
L PVPA R + G T+D+IDL
Sbjct: 299 LTGPVPATRKALAKAGLTVDDIDL 322
>gnl|CDD|150823 pfam10208, Armet, Degradation arginine-rich protein for
mis-folding. This is a family of small proteins of
approximately 170 residues which contain four
di-sulfide bridges that are highly conserved from
nematodes to humans. Armet is a soluble protein
resident in the endoplasmic reticulum and induced by ER
stress. It appears to be involved with dealing with
mis-folded proteins in the ER, thus in quality control
of ER stress.
Length = 154
Score = 27.4 bits (61), Expect = 7.1
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 32 YSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLGSGLDIVSEGELRRALA 91
+S IEK + F G + CY L A S+ A K E+ + L+
Sbjct: 23 FSPDKIEKELIKFCKDTKGKENRFCYYLGALSDSAT-KIT------------NEVSKPLS 69
Query: 92 APVPAERI 99
+P E+I
Sbjct: 70 WHMPVEKI 77
>gnl|CDD|180165 PRK05617, PRK05617, 3-hydroxyisobutyryl-CoA hydrolase; Provisional.
Length = 342
Score = 27.5 bits (62), Expect = 7.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 237 GGGLGIAYHSDHR 249
GGG+GI+ H HR
Sbjct: 113 GGGVGISAHGSHR 125
>gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator;
Provisional.
Length = 278
Score = 27.0 bits (60), Expect = 9.3
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 58 ALKANSNQAVIKTLAHLGSGLDIVSEGELRRALAAPVPAERIVFSGVG 105
L+ + + + A + + LD+ SE +L + A RI+ +G+G
Sbjct: 90 PLRLVGEKLIKENTAAMRATLDVNSEEKLHECVTMLRSARRIILTGIG 137
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.137 0.397
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,046,609
Number of extensions: 459912
Number of successful extensions: 883
Number of sequences better than 10.0: 1
Number of HSP's gapped: 855
Number of HSP's successfully gapped: 28
Length of query: 431
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 335
Effective length of database: 3,920,105
Effective search space: 1313235175
Effective search space used: 1313235175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)