RPSBLAST alignment of GI: 254780371 and protein with PDBid: 2qgh
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A {Helicobacter pylori} PDB: 3c5q_A* Length = 425
Score = 291 bits (745), Expect = 2e-79
Identities = 162/399 (40%), Positives = 236/399 (59%), Gaps = 2/399 (0%)
Query: 16 VSLEKLAHVVQTPFYCYSTTAIEKNYLTFSNAFDGMDTMVCYALKANSNQAVIKTLAHLG 75
+ E+L +TPFY Y I++ +L + AF G +++CYALKANSN +++ LAHL
Sbjct: 22 FNYEELFQTHKTPFYLYDFDKIKQAFLNYKEAFKGRKSLICYALKANSNLSILSLLAHLE 81
Query: 76 SGLDIVSEGELRRALAAPVPAERIVFSGVGKTIDEIDLALQSGIYCFNVESESELKTLNQ 135
SG D VS GE++RAL A + RIVFSGVGK+ EI+ AL+ I NVES ELKT+
Sbjct: 82 SGADCVSIGEIQRALKAGIKPYRIVFSGVGKSAFEIEQALKLNILFLNVESFMELKTIET 141
Query: 136 RAVSLGKKAPIAFRVNPDINANTHKKISTGKKEDKFGIPIHQIHSLYAYASTLPGVKISG 195
A SLG KA I+ R+NP+I+A TH ISTG KE+KFG+ + ++ +A ++
Sbjct: 142 IAQSLGIKARISIRINPNIDAKTHPYISTGLKENKFGVGEKEALEMFLWAKKSAFLEPVS 201
Query: 196 VDMHIGSQIDQIESFHKAFKLLRDLTQQLRSNGHNIQHIDVGGGLGIAYHSDHRPPSSSD 255
V HIGSQ+ +E +A + + + + L + G +++ DVGGG+G+ + + D
Sbjct: 202 VHFHIGSQLLDLEPIIEASQKVAKIAKSLIALGIDLRFFDVGGGIGV-SYENEETIKLYD 260
Query: 256 YASLIHQYFGNLQCKIILEPGRFLVADVGILVTKVISIKKSADKTFVILDVAMNDFMRPT 315
YA I L II EPGR +VA+ G L+T+V+ KK+ +K FVI+D MNDF+RP+
Sbjct: 261 YAQGILNALQGLDLTIICEPGRSIVAESGELITQVLYEKKAQNKRFVIVDAGMNDFLRPS 320
Query: 316 LYDAYHEINYIVNPAGDRLHIHADIVGPICETGDFIALNRKIALPRPGDLLYIEKTGAYG 375
LY A H I I G + D+VGP+CE+ D + + PGD + IEK GAYG
Sbjct: 321 LYHAKHAIRVITPSKGREISP-CDVVGPVCESSDTFLKDAHLPELEPGDKIAIEKVGAYG 379
Query: 376 AVQSGTYNSRLLIPEIMVNGSQFHIIRPRMTFQELIELD 414
+ + YNSR + E+ + + +IR R ++L L+
Sbjct: 380 SSMASQYNSRPKLLELALEDHKIRVIRKREALEDLWRLE 418