HHsearch alignment for GI: 254780372 and conserved domain: COG1338
>COG1338 FliP Flagellar biosynthesis pathway, component FliP [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=624.94 Aligned_cols=225 Identities=50% Similarity=0.898 Sum_probs=212.9
Q ss_pred CCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 02322221246-88887512489999999999999999999997489999999999953020224337999999999999
Q gi|254780372|r 18 FAKSSLHDVMN-IPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTF 96 (246)
Q Consensus 18 ~aq~~~~~~~~-~~~~~~~~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~ 96 (246)
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~vq~l~lLTvLslaPsillmmTSFtRiiIvl~llR~aLG~qqtPPnqVligLALFLTf 102 (248)
T COG1338 23 AAQPSVNLSLNTAPNDPKQLVTTVQLLALLTVLSLAPSILLMMTSFTRIIIVFSFLRTALGTQQTPPNQVLIGLALFLTF 102 (248)
T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 11567766656788983478899999999999999799999998537999999999875077889908999999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98789999999975084334887999999999889999999629989999999850656776544673458668998999
Q gi|254780372|r 97 YVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSF 176 (246)
Q Consensus 97 fVM~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF 176 (246)
T Consensus 103 fiM~Pt~~~iy~~a~~P~~~~~i~~~eA~~k~~~Plr~FMl~qtr~~dl~lf~~~a~~~~~----~~~~~vpl~vliPAF 178 (248)
T COG1338 103 FIMAPTFDKIYDDAIKPLLDEEISQQEAFEKAAEPLREFMLKQTREKDLALFMRIANLPPP----KTPEDVPLRVLIPAF 178 (248)
T ss_pred HHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC----CCCCCCCCHHHHHHH
T ss_conf 9971569999998448165355589999998767899999864887689999998579998----984448711107899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 8999999999999999999999999999999975554273489999999999997428999999987519
Q gi|254780372|r 177 MISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 (246)
Q Consensus 177 ~iSEL~~aF~iGfliylPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~ 246 (246)
T Consensus 179 i~sELk~aFqIGflIylPFlVIDLVVAsvLMaMGMMMlpP~~ISLPFKillFVlvDGW~Llv~sL~~SF~ 248 (248)
T COG1338 179 MISELKTAFQIGFLIYLPFLVIDLVVASVLMAMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVQSFK 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHCCCHHHHHEEEECCHHHHHHHHHHHCC
T ss_conf 9999999998889999899999999999999811220591452133555400375828999999998529