HHsearch alignment for GI: 254780372 and conserved domain: COG4790
>COG4790 EscR Type III secretory pathway, component EscR [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=519.26 Aligned_cols=209 Identities=35% Similarity=0.659 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89999999999999999999997489999999999953020224337999999999999987899999999750843348
Q gi|254780372|r 38 WIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNN 117 (246)
Q Consensus 38 ~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~~~a~~P~~~~ 117 (246)
T Consensus 3 ~~i~LI~~l~llsLLP~ivv~gTsF~K~sVVf~llRNALGvQQvPpNmal~gvAliLsmFvMaPv~~~~~~~~~~~~~~~ 82 (214)
T COG4790 3 NPISLIAVLFLLSLLPFIVVMGTSFLKFSVVFSLLRNALGVQQVPPNMALYGVALILSMFVMAPVGLQIYDRLQNEELSY 82 (214)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 42579999999999899999975355547789999874056548970669999999999998277899998624413478
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87--9999999998899999996299899999998506567765446734586689989998999999999999999999
Q gi|254780372|r 118 QI--TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPF 195 (246)
Q Consensus 118 ~i--~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfliylPF 195 (246)
T Consensus 83 ~~~~~~~~~~~~~l~pyR~fL~k~t~~~~~~FF~~~~~~~wp~e~~~~lk~DsL~iLlPAftlseL~~AF~IGfllYLPF 162 (214)
T COG4790 83 TNIASVVKFDDKGLSPYRDFLKKNTEEEEVSFFERSAQKKWPEEYAEKLKPDSLFILLPAFTLSELTSAFKIGFLLYLPF 162 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 83899999998513478999997074999999999998748788873058751100207877999999999999999799
Q ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999975554273489999999999997428999999987519
Q gi|254780372|r 196 LIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 (246)
Q Consensus 196 lvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~ 246 (246)
T Consensus 163 ivIDLiISniLlAmGMmMvSP~tIS~PfKLllFVl~dGWs~l~~gLv~sy~ 213 (214)
T COG4790 163 IVIDLIISNILLALGMMMVSPVTISLPFKLLLFVLMDGWSLLSHGLVLSYG 213 (214)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHCHHHHHHHHHHHHCC
T ss_conf 999999999999966254085001413798999851629999978888617