HHsearch alignment for GI: 254780372 and conserved domain: PRK05699
>PRK05699 fliP flagellar biosynthesis protein FliP; Reviewed.
Probab=100.00 E-value=0 Score=635.74 Aligned_cols=215 Identities=47% Similarity=0.854 Sum_probs=208.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68888751248999999999999999999999748999999999995302022433799999999999998789999999
Q gi|254780372|r 28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI 107 (246)
Q Consensus 28 ~~~~~~~~~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~ 107 (246)
T Consensus 30 ~~~~~~~~~s~~lqi~~llTvLsL~P~ilim~TsFtrIvIVLsllR~ALG~QQ~PPNqVL~gLALfLT~FVM~Pv~~~i~ 109 (245)
T PRK05699 30 PGAGGGQEYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIY 109 (245)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 59999721328999999999999999999999735999999999999827788990799999999999999999999999
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 97508433488799999999988999999962998999999985065677654467345866899899989999999999
Q gi|254780372|r 108 EMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI 187 (246)
Q Consensus 108 ~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~i 187 (246)
T Consensus 110 ~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~F~~~a~~~~p~~----~~~~~~~vliPAF~~SELk~AF~I 185 (245)
T PRK05699 110 DDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKIAGEPPPKT----PEDVPLSVLVPAFVLSELKTAFQI 185 (245)
T ss_pred HHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC----CCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 9872902037878999999988999999998599999999999718999998----000874132657789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999975554273489999999999997428999999987519
Q gi|254780372|r 188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 (246)
Q Consensus 188 GfliylPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~ 246 (246)
T Consensus 186 GFliylPFlvIDlVVasiLmamGMmMlpP~~ISlPfKllLFVlvDGW~ll~~~Lv~Sy~ 244 (245)
T PRK05699 186 GFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG 244 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 99999999999999999999820211481676456788898511619999999998407