HHsearch alignment for GI: 254780372 and conserved domain: PRK05699

>PRK05699 fliP flagellar biosynthesis protein FliP; Reviewed.
Probab=100.00  E-value=0  Score=635.74  Aligned_cols=215  Identities=47%  Similarity=0.854  Sum_probs=208.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             68888751248999999999999999999999748999999999995302022433799999999999998789999999
Q gi|254780372|r   28 NIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSI  107 (246)
Q Consensus        28 ~~~~~~~~~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~  107 (246)
T Consensus        30 ~~~~~~~~~s~~lqi~~llTvLsL~P~ilim~TsFtrIvIVLsllR~ALG~QQ~PPNqVL~gLALfLT~FVM~Pv~~~i~  109 (245)
T PRK05699         30 PGAGGGQEYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIMSPVFDKIY  109 (245)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             59999721328999999999999999999999735999999999999827788990799999999999999999999999


Q ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             97508433488799999999988999999962998999999985065677654467345866899899989999999999
Q gi|254780372|r  108 EMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEI  187 (246)
Q Consensus       108 ~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~i  187 (246)
T Consensus       110 ~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~F~~~a~~~~p~~----~~~~~~~vliPAF~~SELk~AF~I  185 (245)
T PRK05699        110 DDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKIAGEPPPKT----PEDVPLSVLVPAFVLSELKTAFQI  185 (245)
T ss_pred             HHHHCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCC----CCCCCCEEEHHHHHHHHHHHHHHH
T ss_conf             9872902037878999999988999999998599999999999718999998----000874132657789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999999975554273489999999999997428999999987519
Q gi|254780372|r  188 GFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI  246 (246)
Q Consensus       188 GfliylPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~  246 (246)
T Consensus       186 GFliylPFlvIDlVVasiLmamGMmMlpP~~ISlPfKllLFVlvDGW~ll~~~Lv~Sy~  244 (245)
T PRK05699        186 GFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFG  244 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf             99999999999999999999820211481676456788898511619999999998407