HHsearch alignment for GI: 254780372 and conserved domain: PRK05701

>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=94.99  E-value=0.26  Score=27.13  Aligned_cols=109  Identities=15%  Similarity=0.171  Sum_probs=62.0

Q ss_pred             HCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             508433488799999-9999889999999629989999999850656776544673458668998999899999999999
Q gi|254780372|r  110 GIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG  188 (246)
Q Consensus       110 a~~P~~~~~i~~~~a-~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iG  188 (246)
T Consensus       109 ~~DP~~~~q~~~~~~~~~~~~~--~lF~~~~gh~~~l~~l~~Sf~-~~P~g~------~~~~~~~~~~~~~~~~~~f~~a  179 (250)
T PRK05701        109 MVDPTSGQQSPLLGQFLTLLAL--LLFLALDGHHLLIRALVDSFQ-TLPIGG------FLLNGNAFLLLAKALSAMFLIG  179 (250)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHH-HCCCCC------CCCCHHHHHHHHHHHHHHHHHH
T ss_conf             4798777755389999999999--999997719999999999987-648987------7566899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHH
Q ss_conf             999999999999999999--997555427348999999999
Q gi|254780372|r  189 FLIILPFLIIDMIVATIV--MAMGMMMLPPTSISLPFKVIF  227 (246)
Q Consensus       189 fliylPFlvIDlvVa~iL--mamGMmMl~P~~iSlPfKlll  227 (246)
T Consensus       180 l~lAaPi~~~~ll~~~~lG~l~R~~PQlnvf~vg~p~ki~~  220 (250)
T PRK05701        180 LQLALPIIVALLLVNLALGLLNRAAPQLNIFVIGFPLKITV  220 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             99998999999999999999997073000899997799999