HHsearch alignment for GI: 254780372 and conserved domain: PRK05701
>PRK05701 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=94.99 E-value=0.26 Score=27.13 Aligned_cols=109 Identities=15% Similarity=0.171 Sum_probs=62.0
Q ss_pred HCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 508433488799999-9999889999999629989999999850656776544673458668998999899999999999
Q gi|254780372|r 110 GIQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIG 188 (246)
Q Consensus 110 a~~P~~~~~i~~~~a-~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iG 188 (246)
T Consensus 109 ~~DP~~~~q~~~~~~~~~~~~~--~lF~~~~gh~~~l~~l~~Sf~-~~P~g~------~~~~~~~~~~~~~~~~~~f~~a 179 (250)
T PRK05701 109 MVDPTSGQQSPLLGQFLTLLAL--LLFLALDGHHLLIRALVDSFQ-TLPIGG------FLLNGNAFLLLAKALSAMFLIG 179 (250)
T ss_pred CCCCCCCCCCCHHHHHHHHHHH--HHHHHHCHHHHHHHHHHHHHH-HCCCCC------CCCCHHHHHHHHHHHHHHHHHH
T ss_conf 4798777755389999999999--999997719999999999987-648987------7566899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHH
Q ss_conf 999999999999999999--997555427348999999999
Q gi|254780372|r 189 FLIILPFLIIDMIVATIV--MAMGMMMLPPTSISLPFKVIF 227 (246)
Q Consensus 189 fliylPFlvIDlvVa~iL--mamGMmMl~P~~iSlPfKlll 227 (246)
T Consensus 180 l~lAaPi~~~~ll~~~~lG~l~R~~PQlnvf~vg~p~ki~~ 220 (250)
T PRK05701 180 LQLALPIIVALLLVNLALGLLNRAAPQLNIFVIGFPLKITV 220 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99998999999999999999997073000899997799999