HHsearch alignment for GI: 254780372 and conserved domain: PRK09617
>PRK09617 type III secretion system protein; Reviewed.
Probab=100.00 E-value=0 Score=619.52 Aligned_cols=213 Identities=32% Similarity=0.637 Sum_probs=204.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 75124899999999999999999999974899999999999530202243379999999999999878999999997508
Q gi|254780372|r 33 LSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQ 112 (246)
Q Consensus 33 ~~~~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~~~a~~ 112 (246)
T Consensus 81 ~~~~~~~~~~~lllTvLSLaP~ilim~TSFtRIvIVLsllRnALG~QQ~PPNqVL~GLALfLT~FVM~PV~~~i~~~a~~ 160 (305)
T PRK09617 81 SDTYPDLTTQAVILAFLALSPFLVMLLTSYLKIIITLVLLRNALGVQQTPPSQVLNGIALILSIYVMFPTGVAMYDDAQK 160 (305)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 23486289999999999999999999961289999999998720768798799999999999999999999999999845
Q ss_pred CCCCCCCCHH-----------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 4334887999-----------99999988999999962998999999985065677654467345866899899989999
Q gi|254780372|r 113 PLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISEL 181 (246)
Q Consensus 113 P~~~~~i~~~-----------~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL 181 (246)
T Consensus 161 p~~~~~i~~~~~~~~~~~~~~~a~~~~~~Plr~FM~~~tr~~dl~~F~~~a~~~~p~~~~~~~~~~~l~vLiPAFvlSEL 240 (305)
T PRK09617 161 GIESNAVPRDLFSAEGAETVFVALNKSKEPLRSFLIKNTPKPQIQSFYKISQKTFPPEIRDALTPSDFVIIIPAFIMGQI 240 (305)
T ss_pred HHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEHHHHHHHHH
T ss_conf 23303445343123223569999998776799999980899999999998454488752235677873110579999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999997555427348999999999999742899999998751
Q gi|254780372|r 182 RRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245 (246)
Q Consensus 182 ~~aF~iGfliylPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy 245 (246)
T Consensus 241 ktAFqIGFlIYLPFlVIDLVVAsVLmAMGMMMlpP~~ISLPfKLLLFVlvDGW~Lli~~Lv~Sf 304 (305)
T PRK09617 241 KNAFEIGVLIYLPFFVIDLVTANVLVAMQMMMLSPLSISLPLKLLLFVMVDGWTLLLEGLMISF 304 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEECHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999980021058046544577778740260999999998742