HHsearch alignment for GI: 254780372 and conserved domain: PRK12780
>PRK12780 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=93.94 E-value=0.46 Score=25.68 Aligned_cols=109 Identities=16% Similarity=0.101 Sum_probs=62.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 08433488799999999988999999962998999999985065677654467345866899899989999999999999
Q gi|254780372|r 111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL 190 (246)
Q Consensus 111 ~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfl 190 (246)
T Consensus 114 ~dP~~~~~~~~l~~f~~~~-~~llFl~~~gH~~li~~l~~Sf~~~P~g~-------~~~~~~~~~~~~~~~~~~F~lal~ 185 (250)
T PRK12780 114 TPVEDTEPAPALVSLIVLA-ATALFFATDLHWELLRGLIASYDRIPPGE-------GFGGQAALVQLVDQLSEAFTLALR 185 (250)
T ss_pred CCCCCCCCCCHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7987889775999999999-99999997869999999999762107997-------756378999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHH
Q ss_conf 9999999999999999--997555427348999999999
Q gi|254780372|r 191 IILPFLIIDMIVATIV--MAMGMMMLPPTSISLPFKVIF 227 (246)
Q Consensus 191 iylPFlvIDlvVa~iL--mamGMmMl~P~~iSlPfKlll 227 (246)
T Consensus 186 lAaPvi~~~ll~nv~lGil~R~~PQlNvf~vg~P~~i~~ 224 (250)
T PRK12780 186 IASPFIIYSVIVNLAVGLANKLTPTIPVYFISTPFVLFG 224 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999998033555899995699999