HHsearch alignment for GI: 254780372 and conserved domain: PRK12780

>PRK12780 fliR flagellar biosynthesis protein FliR; Reviewed.
Probab=93.94  E-value=0.46  Score=25.68  Aligned_cols=109  Identities=16%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             08433488799999999988999999962998999999985065677654467345866899899989999999999999
Q gi|254780372|r  111 IQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFL  190 (246)
Q Consensus       111 ~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfl  190 (246)
T Consensus       114 ~dP~~~~~~~~l~~f~~~~-~~llFl~~~gH~~li~~l~~Sf~~~P~g~-------~~~~~~~~~~~~~~~~~~F~lal~  185 (250)
T PRK12780        114 TPVEDTEPAPALVSLIVLA-ATALFFATDLHWELLRGLIASYDRIPPGE-------GFGGQAALVQLVDQLSEAFTLALR  185 (250)
T ss_pred             CCCCCCCCCCHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             7987889775999999999-99999997869999999999762107997-------756378999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHCHHHHHHHHHHHH
Q ss_conf             9999999999999999--997555427348999999999
Q gi|254780372|r  191 IILPFLIIDMIVATIV--MAMGMMMLPPTSISLPFKVIF  227 (246)
Q Consensus       191 iylPFlvIDlvVa~iL--mamGMmMl~P~~iSlPfKlll  227 (246)
T Consensus       186 lAaPvi~~~ll~nv~lGil~R~~PQlNvf~vg~P~~i~~  224 (250)
T PRK12780        186 IASPFIIYSVIVNLAVGLANKLTPTIPVYFISTPFVLFG  224 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999998033555899995699999