HHsearch alignment for GI: 254780372 and conserved domain: PRK12797

>PRK12797 type III secretion system protein; Provisional.
Probab=100.00  E-value=0  Score=606.55  Aligned_cols=211  Identities=36%  Similarity=0.671  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf             24899999999999999999999974899999999999530202243379999999999999878999999997508433
Q gi|254780372|r   36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM  115 (246)
Q Consensus        36 ~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~~~a~~P~~  115 (246)
T Consensus         3 ~~~~l~ll~llt~lsL~P~~lim~TsFtri~IVLs~lR~AlG~Qq~PPn~Vl~gLALfLT~fvM~Pv~~~~~~~~~~p~~   82 (215)
T PRK12797          3 LPDPLQLIIVLALLSLLPFIAVMVTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILSLFVMAPVGMAIQDRLQAEPL   82 (215)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             88489999999999999999999973699999999999972768798489999999999999998889999998846575


Q ss_pred             CCCCCH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             488799--999999988999999962998999999985065677654467345866899899989999999999999999
Q gi|254780372|r  116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL  193 (246)
Q Consensus       116 ~~~i~~--~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfliyl  193 (246)
T Consensus        83 ~~~~~~~~~~a~~~~~~Plr~FM~~~t~~~~l~~f~~~~~~~~p~~~~~~~~~~~l~vliPAF~iSELk~AF~IGFliyL  162 (215)
T PRK12797         83 SLGATDSVLQLLDAALEPLRQFLKKHTRERERAFFLRSAKRIWPEEYADSLKPDDLLILIPAFTLSELTRAFEIGFLLYL  162 (215)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf             75441789999999888999999871999899999998502289753367666884100079999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999975554273489999999999997428999999987519
Q gi|254780372|r  194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI  246 (246)
Q Consensus       194 PFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~  246 (246)
T Consensus       163 PFlvIDlVVasiLmamGMmMlpP~~ISlPfKllLFVlvDGW~ll~~~Lv~sy~  215 (215)
T PRK12797        163 PFIVIDLVISNILLAMGMMMVSPTTISLPFKLLLFVLLDGWSRLLHGLVLSYR  215 (215)
T ss_pred             HHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf             99999999999999820100582687577888898741709999999987439