HHsearch alignment for GI: 254780372 and conserved domain: PRK12797
>PRK12797 type III secretion system protein; Provisional.
Probab=100.00 E-value=0 Score=606.55 Aligned_cols=211 Identities=36% Similarity=0.671 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 24899999999999999999999974899999999999530202243379999999999999878999999997508433
Q gi|254780372|r 36 STWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLM 115 (246)
Q Consensus 36 ~~~~iqll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~~~a~~P~~ 115 (246)
T Consensus 3 ~~~~l~ll~llt~lsL~P~~lim~TsFtri~IVLs~lR~AlG~Qq~PPn~Vl~gLALfLT~fvM~Pv~~~~~~~~~~p~~ 82 (215)
T PRK12797 3 LPDPLQLIIVLALLSLLPFIAVMVTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILSLFVMAPVGMAIQDRLQAEPL 82 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 88489999999999999999999973699999999999972768798489999999999999998889999998846575
Q ss_pred CCCCCH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 488799--999999988999999962998999999985065677654467345866899899989999999999999999
Q gi|254780372|r 116 NNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIIL 193 (246)
Q Consensus 116 ~~~i~~--~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfliyl 193 (246)
T Consensus 83 ~~~~~~~~~~a~~~~~~Plr~FM~~~t~~~~l~~f~~~~~~~~p~~~~~~~~~~~l~vliPAF~iSELk~AF~IGFliyL 162 (215)
T PRK12797 83 SLGATDSVLQLLDAALEPLRQFLKKHTRERERAFFLRSAKRIWPEEYADSLKPDDLLILIPAFTLSELTRAFEIGFLLYL 162 (215)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 75441789999999888999999871999899999998502289753367666884100079999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999975554273489999999999997428999999987519
Q gi|254780372|r 194 PFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSFI 246 (246)
Q Consensus 194 PFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~Lv~sy~ 246 (246)
T Consensus 163 PFlvIDlVVasiLmamGMmMlpP~~ISlPfKllLFVlvDGW~ll~~~Lv~sy~ 215 (215)
T PRK12797 163 PFIVIDLVISNILLAMGMMMVSPTTISLPFKLLLFVLLDGWSRLLHGLVLSYR 215 (215)
T ss_pred HHHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 99999999999999820100582687577888898741709999999987439