HHsearch alignment for GI: 254780372 and conserved domain: TIGR01102
>TIGR01102 yscR type III secretion apparatus protein, YscR/HrcR family; InterPro: IPR005773 This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells.; GO: 0015031 protein transport, 0016021 integral to membrane.
Probab=100.00 E-value=0 Score=597.16 Aligned_cols=200 Identities=34% Similarity=0.662 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCC
Q ss_conf 999999999999999999748999999999995302022433799999999999998789999999975084334--887
Q gi|254780372|r 42 TFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMN--NQI 119 (246)
Q Consensus 42 ll~llt~LsL~P~ilim~TsFtrIvIVLsilRnALG~QQ~PPN~Vl~gLALfLT~fVM~Pv~~~i~~~a~~P~~~--~~i 119 (246)
T Consensus 1 Li~~l~~L~LLP~~~v~~TsF~KisvVl~llRNALGvQQvPPNmaLyG~AL~ls~FVMaPv~~~~~~~~~~~~~~~~~~~ 80 (209)
T TIGR01102 1 LIIVLALLSLLPLIVVVGTSFLKISVVLGLLRNALGVQQVPPNMALYGIALILSMFVMAPVGLQAQDRIHQEPVALTNID 80 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCH
T ss_conf 29999999999999999988999999999998652037887337999999999998738999999998851100016855
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC-------CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988999999962998999999985065677-------65446734586689989998999999999999999
Q gi|254780372|r 120 TETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHR-------NTDITKNDHIEYRILIPSFMISELRRSFEIGFLII 192 (246)
Q Consensus 120 ~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~-------~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfliy 192 (246)
T Consensus 81 ~~~~~~~~~~~Pyr~fL~k~t~~~~~~FF~~~~~k~wPGeeteav~~~~~~~~~D~L~iL~PAF~lSEL~~AF~IGFLlY 160 (209)
T TIGR01102 81 SLQKLLDAGLAPYREFLKKNTDEDEVAFFERSTQKLWPGEETEAVKEMADRLKKDSLLILLPAFTLSELTAAFKIGFLLY 160 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999877899998861738999999998874148740244478996228884545766899999999888779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999755542734899999999999974289999999
Q gi|254780372|r 193 LPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENL 241 (246)
Q Consensus 193 lPFlvIDlvVa~iLmamGMmMl~P~~iSlPfKlllFV~vdGW~ll~~~L 241 (246)
T Consensus 161 LPFIVIDLivSNiLLAlGM~MVSP~tiS~PfKLLLFvl~dGW~~L~~gL 209 (209)
T TIGR01102 161 LPFIVIDLIVSNILLALGMMMVSPMTISLPFKLLLFVLLDGWSRLLHGL 209 (209)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999998202120157999999999999952388862139