Query gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 123 out of 725
Neff 4.7
Searched_HMMs 23785
Date Mon May 30 09:46:37 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780372.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ekj_A Beta-carbonic anhydrase 36.8 17 0.00073 14.8 2.6 42 116-158 5-46 (221)
2 2ve8_A FTSK, DNA translocase F 12.0 39 0.0016 12.7 0.0 26 165-190 7-39 (73)
3 1nkw_1 50S ribosomal protein L 11.9 53 0.0022 11.9 0.7 18 70-87 2-19 (82)
4 2f6m_A Suppressor protein STP2 10.0 34 0.0014 13.0 -0.8 51 99-150 1-53 (65)
5 3c9h_A ABC transporter, substr 9.7 58 0.0024 11.7 0.3 31 1-31 1-31 (355)
6 1rh5_B Preprotein translocase 8.4 77 0.0032 10.9 2.8 62 125-202 5-66 (74)
7 2p22_A Suppressor protein STP2 6.6 73 0.0031 11.1 -0.3 11 178-188 131-141 (174)
8 1mh3_A Maltose binding-A1 home 6.4 97 0.0041 10.3 4.4 51 100-154 336-386 (421)
9 1v7m_V Thrombopoietin; FAB fra 6.0 1E+02 0.0043 10.2 1.2 15 68-83 100-114 (163)
10 3h3g_A Fusion protein of malto 5.7 1.1E+02 0.0044 10.1 4.0 54 100-153 338-391 (539)
No 1
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Probab=36.85 E-value=17 Score=14.82 Aligned_cols=42 Identities=19% Similarity=0.384 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 4887999999999889999999629989999999850656776
Q gi|254780372|r 116 NNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRN 158 (246)
Q Consensus 116 ~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~ 158 (246)
...++..+|+++-.+..++|.. +..+++..+|.++++...|+
T Consensus 5 ~~~~~~~~a~e~L~~G~~~f~~-~~~~~~~~~~~~la~gQ~P~ 46 (221)
T 1ekj_A 5 SDGIPKSEASERIKTGFLHFKK-EKYDKNPALYGELAKGQSPP 46 (221)
T ss_dssp -------CHHHHHHHHHHHHHH-HTTTSCHHHHHHHTTCCCCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHCCCCCC
T ss_conf 8999979999999999999985-76632889999985689984
No 2
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=12.02 E-value=39 Score=12.74 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=15.3
Q ss_pred CCCCHHHHHHHHHH-------HHHHHHHHHHHH
Q ss_conf 45866899899989-------999999999999
Q gi|254780372|r 165 DHIEYRILIPSFMI-------SELRRSFEIGFL 190 (246)
Q Consensus 165 ~~~~~~vLiPAF~i-------SEL~~aF~iGfl 190 (246)
++++++--+-.|++ |-|++.|+|||-
T Consensus 7 ~~D~l~~~a~~~V~~~~kaS~S~lQR~l~IGYn 39 (73)
T 2ve8_A 7 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYN 39 (73)
T ss_dssp CCCTTHHHHHHHHHHHCCCCHHHHHHHHTCCHH
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCH
T ss_conf 564899999999998087458999999730507
No 3
>1nkw_1 50S ribosomal protein L33; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_1* 1yl3_6 2b66_6 2b9n_6 2b9p_6
Probab=11.91 E-value=53 Score=11.89 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=12.5
Q ss_pred HHHHHHHCCCCCCHHHHH
Q ss_conf 999953020224337999
Q gi|254780372|r 70 SILRTGMGMGSVPPNLVI 87 (246)
Q Consensus 70 silRnALG~QQ~PPN~Vl 87 (246)
.++|||||+.--+|....
T Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (82)
T 1nkw_1 2 FLLRQALGATFPVPGDQR 19 (82)
T ss_pred HHHHHHHCCCCCCCHHHH
T ss_conf 002665489878861133
No 4
>2f6m_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosomes, trafficking complex, vacuole protein sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=9.98 E-value=34 Score=13.04 Aligned_cols=51 Identities=18% Similarity=0.256 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHC-CCCCCCCC-CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 7899999999750-84334887-9999999998899999996299899999998
Q gi|254780372|r 99 MSPTLDRSIEMGI-QPLMNNQI-TETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150 (246)
Q Consensus 99 M~Pv~~~i~~~a~-~P~~~~~i-~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~ 150 (246)
|.|-++|+|+-.. +--.+..+ ..++|++++.-++-.|+ ||+|.=.++.|..
T Consensus 1 ~t~~lnQl~~l~Aed~AieDaiy~L~~aL~~g~I~ld~yl-K~vR~LaReQF~~ 53 (65)
T 2f6m_A 1 MTDGLNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFV-KQGRELARQQFLV 53 (65)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHH-HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHHHHHH
T ss_conf 9728999999998997789999999999986985699999-9999999999999
No 5
>3c9h_A ABC transporter, substrate binding protein; structural genomics, MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str}
Probab=9.70 E-value=58 Score=11.68 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9899999999983123102322221246888
Q gi|254780372|r 1 MIRYCFFALFLVTPELVFAKSSLHDVMNIPA 31 (246)
Q Consensus 1 m~~~~~~~~~~~~~~~a~aq~~~~~~~~~~~ 31 (246)
|.+.++++++++..+++.++...........
T Consensus 1 ~~~~l~l~l~~~~a~~ala~~~~~~~~~~~~ 31 (355)
T 3c9h_A 1 MRICLFLCLCLCMASPALAQVAVFPALSGKT 31 (355)
T ss_dssp ---------------CEEEEEEEECCTTC--
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9079999999999999998886423435677
No 6
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.38 E-value=77 Score=10.92 Aligned_cols=62 Identities=16% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999988999999962998999999985065677654467345866899899989999999999999999999999999
Q gi|254780372|r 125 IQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIV 202 (246)
Q Consensus 125 ~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~~~~~~~~~~~~~~~~~vLiPAF~iSEL~~aF~iGfliylPFlvIDlvV 202 (246)
+++-.+++|+|.. |-..+++.++++..+ .+.-..-+=.+.=+--|| |||.+|+.+.-|.=++
T Consensus 5 i~~~~e~l~~F~~------~~~rvlk~~~KP~~~---------Ef~~i~k~~~iG~~i~G~-IGf~Ikli~~~i~~iI 66 (74)
T 1rh5_B 5 FNQKIEQLKEFIE------ECRRVWLVLKKPTKD---------EYLAVAKVTALGISLLGI-IGYIIHVPATYIKGIL 66 (74)
T ss_dssp -------CCHHHH------HHHHHHHSEECCCHH---------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHCCCCHH---------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCC
T ss_conf 9999999999999------999999994499899---------999999999999999999-9999999999801456
No 7
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=6.63 E-value=73 Score=11.06 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780372|r 178 ISELRRSFEIG 188 (246)
Q Consensus 178 iSEL~~aF~iG 188 (246)
+--|.+||+=|
T Consensus 131 i~~l~~al~~~ 141 (174)
T 2p22_A 131 IECLSRMLHRG 141 (174)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHCC
T ss_conf 99999999859
No 8
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=6.37 E-value=97 Score=10.33 Aligned_cols=51 Identities=4% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
Q ss_conf 8999999997508433488799999999988999999962998999999985065
Q gi|254780372|r 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS 154 (246)
Q Consensus 100 ~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~~ 154 (246)
.+.+.++.+++++....|+.+.++|++.+.-| -..|..++-+++....-|+
T Consensus 336 ~~~v~~~~~~~l~~~~~G~~tpeeAl~~AQt~----~~~~~~~~~~~~~~~~~~~ 386 (421)
T 1mh3_A 336 MSAFWYAVRTAVINAASGRQTVDAALAAAQTA----AAAAISPQARAFLEQVFRR 386 (421)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH----HHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHH
T ss_conf 89999999999999985989899999984285----6656585225789999998
No 9
>1v7m_V Thrombopoietin; FAB fragment, complex (cytokine/antibody), immune system/cytokine complex; 2.51A {Homo sapiens} SCOP: a.26.1.2 PDB: 1v7n_V
Probab=5.95 E-value=1e+02 Score=10.19 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCH
Q ss_conf 9999995302022433
Q gi|254780372|r 68 VFSILRTGMGMGSVPP 83 (246)
Q Consensus 68 VLsilRnALG~QQ~PP 83 (246)
+++.+| ++|.|+.||
T Consensus 100 l~~~Lr-sL~~q~~~p 114 (163)
T 1v7m_V 100 LLGALQ-SLLGTQLPP 114 (163)
T ss_dssp HHHHHH-HHHTSCCCS
T ss_pred HHHHHH-HHCCCCCCC
T ss_conf 999999-707766899
No 10
>3h3g_A Fusion protein of maltose-binding periplasmic domain and human parathyroid hormone...; GPCR, extracellular domain, PTHRP, PTH, PThr1, periplasm, sugar transport, transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* 3ehs_A* 3ehu_A* 3eht_A*
Probab=5.72 E-value=1.1e+02 Score=10.10 Aligned_cols=54 Identities=6% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 899999999750843348879999999998899999996299899999998506
Q gi|254780372|r 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153 (246)
Q Consensus 100 ~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~FM~~~t~~~dl~~f~~~a~ 153 (246)
...+..+..++++....|+.+.++|++++.+-..+=+-+..++++.+.++.-+.
T Consensus 338 ~~~i~~~l~~~i~~vl~G~~tpeeAl~~aq~~~~a~i~~~~~~~~~~~~~~~a~ 391 (539)
T 3h3g_A 338 MSAFWYAVRTAVINAASGRQTVDEALKDAQTNAAAEFDDVMTKEEQIFLLHRAQ 391 (539)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999839999999999999999999999998988788887554
Done!