Query gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein FliP [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 246
No_of_seqs 123 out of 725
Neff 4.7
Searched_HMMs 13730
Date Wed Jun 1 03:29:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780372.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cksa_ d.97.1.1 (A:) CksHs2 { 26.6 8.5 0.00062 15.3 0.6 10 72-82 42-51 (74)
2 d1rh5b_ f.23.28.1 (B:) Preprot 17.1 24 0.0017 12.6 2.8 15 187-201 40-54 (56)
3 d2ve8a1 a.4.5.67 (A:745-811) D 12.8 20 0.0015 13.0 0.0 12 178-189 21-32 (67)
4 d2j5pa1 a.4.5.67 (A:1261-1329) 10.2 28 0.002 12.2 0.0 25 166-190 5-36 (69)
5 d1dqaa1 d.58.20.1 (A:587-703) 7.4 26 0.0019 12.3 -1.1 16 125-140 74-89 (117)
6 d2hf5a1 a.39.1.5 (A:81-113) Tr 6.5 55 0.004 10.4 1.4 8 180-187 4-11 (33)
7 d1q0qa1 a.69.3.1 (A:301-398) 1 5.8 60 0.0044 10.1 2.2 37 99-135 31-67 (98)
8 d2nnua1 b.91.1.1 (A:1-200) E2 4.8 75 0.0054 9.6 0.5 11 76-86 54-64 (200)
9 d1bh9b_ a.22.1.3 (B:) TAF(II)2 4.5 81 0.0059 9.4 1.9 17 71-88 25-41 (89)
10 d2f9wa1 c.55.1.13 (A:115-248) 4.5 81 0.0059 9.3 1.0 12 83-94 120-131 (134)
No 1
>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.58 E-value=8.5 Score=15.28 Aligned_cols=10 Identities=20% Similarity=0.358 Sum_probs=6.2
Q ss_pred HHHHHCCCCCC
Q ss_conf 99530202243
Q gi|254780372|r 72 LRTGMGMGSVP 82 (246)
Q Consensus 72 lRnALG~QQ~P 82 (246)
-|+ ||+||.|
T Consensus 42 WR~-LGIqqS~ 51 (74)
T d1cksa_ 42 WRR-LGVQQSL 51 (74)
T ss_dssp HHH-HTCCCCT
T ss_pred HHH-HCCCCCC
T ss_conf 998-4725589
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=17.14 E-value=24 Score=12.59 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999999
Q gi|254780372|r 187 IGFLIILPFLIIDMI 201 (246)
Q Consensus 187 iGfliylPFlvIDlv 201 (246)
|||.+|+++..|.=+
T Consensus 40 IGf~I~li~~~i~~i 54 (56)
T d1rh5b_ 40 IGYIIHVPATYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999973422
No 3
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas aeruginosa [TaxId: 287]}
Probab=12.85 E-value=20 Score=12.99 Aligned_cols=12 Identities=42% Similarity=0.922 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780372|r 178 ISELRRSFEIGF 189 (246)
Q Consensus 178 iSEL~~aF~iGf 189 (246)
+|-|++.|+|||
T Consensus 21 ~S~lQR~l~IGY 32 (67)
T d2ve8a1 21 ISAVQRKLKIGY 32 (67)
T ss_dssp HHHHHHHHTCCH
T ss_pred HHHHHHHHHCCH
T ss_conf 899999971150
No 4
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=10.23 E-value=28 Score=12.16 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHH-------HHHHHHHHHHHHH
Q ss_conf 586689989998-------9999999999999
Q gi|254780372|r 166 HIEYRILIPSFM-------ISELRRSFEIGFL 190 (246)
Q Consensus 166 ~~~~~vLiPAF~-------iSEL~~aF~iGfl 190 (246)
++|++--+-.|+ +|-|++.|+|||-
T Consensus 5 ~D~ly~~a~~~V~~~~kaS~S~lQR~l~IGYn 36 (69)
T d2j5pa1 5 LDPLFDQAVQFVTEKRKASISGVQRQFRIGYN 36 (69)
T ss_dssp SCTTHHHHHHHHHHTTEEEHHHHHHHHTCCHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCH
T ss_conf 22899999999998086448999999712522
No 5
>d1dqaa1 d.58.20.1 (A:587-703) NAD-binding domain of HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.43 E-value=26 Score=12.31 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999889999999629
Q gi|254780372|r 125 IQRVAEPFWVFMRNNT 140 (246)
Q Consensus 125 ~~~~~~Plr~FM~~~t 140 (246)
...+.+-.-+|+.++.
T Consensus 74 vT~at~~a~~~i~~~~ 89 (117)
T d1dqaa1 74 ISKGTEKALSKLHEYF 89 (117)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8999999999999859
No 6
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=6.50 E-value=55 Score=10.38 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780372|r 180 ELRRSFEI 187 (246)
Q Consensus 180 EL~~aF~i 187 (246)
|++.||++
T Consensus 4 el~eAF~~ 11 (33)
T d2hf5a1 4 EIREAFRV 11 (33)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999987
No 7
>d1q0qa1 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=5.76 E-value=60 Score=10.12 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 7899999999750843348879999999998899999
Q gi|254780372|r 99 MSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVF 135 (246)
Q Consensus 99 M~Pv~~~i~~~a~~P~~~~~i~~~~a~~~~~~Plr~F 135 (246)
+.-+++.++|.+++-+.+++|+..+-.+-...-+..+
T Consensus 31 ~~~vlNAANEvaV~~FL~~kI~F~dI~~~i~~~l~~~ 67 (98)
T d1q0qa1 31 ATTALNAANEITVAAFLAQQIRFTDIAALNLSVLEKM 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 3578777789999999985998888999999999872
No 8
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
Probab=4.77 E-value=75 Score=9.56 Aligned_cols=11 Identities=27% Similarity=0.301 Sum_probs=0.0
Q ss_pred HCCCCCCHHHH
Q ss_conf 02022433799
Q gi|254780372|r 76 MGMGSVPPNLV 86 (246)
Q Consensus 76 LG~QQ~PPN~V 86 (246)
||.|-+||-+|
T Consensus 54 lG~q~VP~l~V 64 (200)
T d2nnua1 54 INHQVVPTLAV 64 (200)
T ss_dssp ETTEECCCHHH
T ss_pred ECCEECCCHHH
T ss_conf 09876796687
No 9
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.47 E-value=81 Score=9.35 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=0.0
Q ss_pred HHHHHHCCCCCCHHHHHH
Q ss_conf 999530202243379999
Q gi|254780372|r 71 ILRTGMGMGSVPPNLVII 88 (246)
Q Consensus 71 ilRnALG~QQ~PPN~Vl~ 88 (246)
++.+.+| |.+|+|.++.
T Consensus 25 l~~~~~g-~sv~~~v~i~ 41 (89)
T d1bh9b_ 25 LIQSITG-TSVSQNVVIA 41 (89)
T ss_dssp HHHHHHS-SCCCHHHHHH
T ss_pred HHHHHCC-CCCCHHHHHH
T ss_conf 9999809-9889139999
No 10
>d2f9wa1 c.55.1.13 (A:115-248) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.46 E-value=81 Score=9.34 Aligned_cols=12 Identities=50% Similarity=0.802 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 379999999999
Q gi|254780372|r 83 PNLVIISLALFM 94 (246)
Q Consensus 83 PN~Vl~gLALfL 94 (246)
||.|+-||++.+
T Consensus 120 p~Lvl~GL~la~ 131 (134)
T d2f9wa1 120 PDLVFVGLALAC 131 (134)
T ss_dssp TTHHHHHHHHHS
T ss_pred CCCHHHHHHHHC
T ss_conf 884699999877
Done!