RPSBLAST alignment for GI: 254780372 and conserved domain: TIGR01102
>gnl|CDD|130172 TIGR01102, yscR, type III secretion apparatus protein, YscR/HrcR family. This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. Length = 202
Score = 153 bits (389), Expect = 4e-38
Identities = 70/203 (34%), Positives = 120/203 (59%), Gaps = 8/203 (3%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
+ LS+ P ++++ T F + +V ILR +G+ VPPN+ + +AL ++ +VM+P
Sbjct: 3 AVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVG 62
Query: 104 DRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRN 158
++ + Q +N ++ P+ F++ NT E +++ F
Sbjct: 63 HQAQDRFHQEPVAYSNIDFLQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQKMWPKEMA 122
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ K+ + IL+P+F +SEL +F+IGFL+ LPF++ID+IV+ I++A+GMMM+ P +
Sbjct: 123 DRLKKDSLL---ILLPAFTLSELTAAFKIGFLLYLPFIVIDLIVSNILLALGMMMVSPMT 179
Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241
ISLPFK++ FVLIDGWS L+ L
Sbjct: 180 ISLPFKLLLFVLIDGWSRLLHGL 202