RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein
FliP [Candidatus Liberibacter asiaticus str. psy62]
(246 letters)
>gnl|CDD|144419 pfam00813, FliP, FliP family.
Length = 194
Score = 250 bits (641), Expect = 3e-67
Identities = 100/198 (50%), Positives = 142/198 (71%), Gaps = 4/198 (2%)
Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
+ T+LS+AP +LIM+T F R +IV S+LR +G PPN V+I LALF+T +VM+P
Sbjct: 1 LLTVLSLAPAILIMMTSFTRIVIVLSLLRQALGTQQTPPNQVLIGLALFLTLFVMAPVFQ 60
Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
E +QP ++ +IT A+ R AEP FM TREKDL+LF+++A K
Sbjct: 61 EIYEDALQPYLDGEITVEEALDRAAEPLREFMLKQTREKDLALFLELAK----EEWPAKP 116
Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
+ + +LIP+F++SEL+ +F+IGFLI LPFL+ID++VA+++MAMGMMMLPP +ISLPFK
Sbjct: 117 EDVPLLVLIPAFVLSELKTAFQIGFLIYLPFLVIDLVVASVLMAMGMMMLPPVTISLPFK 176
Query: 225 VIFFVLIDGWSLLVENLV 242
++ FVL+DGW+LLV +LV
Sbjct: 177 LLLFVLVDGWTLLVGSLV 194
>gnl|CDD|31529 COG1338, FliP, Flagellar biosynthesis pathway, component FliP [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 248
Score = 231 bits (591), Expect = 1e-61
Identities = 114/245 (46%), Positives = 163/245 (66%), Gaps = 5/245 (2%)
Query: 2 IRYCFFALFLVTPELVFAKSSLHDVMNI-PADLSISTWIVRTFGIFTILSIAPILLIMVT 60
L A+ S++ +N P D V+ + T+LS+AP +L+M+T
Sbjct: 7 FLILICPLICPLMSADAAQPSVNLSLNTAPNDPKQLVTTVQLLALLTVLSLAPSILLMMT 66
Query: 61 CFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQIT 120
F R IIVFS LRT +G PPN V+I LALF+TF++M+PT D+ + I+PL++ +I+
Sbjct: 67 SFTRIIIVFSFLRTALGTQQTPPNQVLIGLALFLTFFIMAPTFDKIYDDAIKPLLDEEIS 126
Query: 121 ETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISE 180
+ A ++ AEP FM TREKDL+LFM +A+ + + R+LIP+FMISE
Sbjct: 127 QQEAFEKAAEPLREFMLKQTREKDLALFMRIANLP----PPKTPEDVPLRVLIPAFMISE 182
Query: 181 LRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVEN 240
L+ +F+IGFLI LPFL+ID++VA+++MAMGMMMLPP ISLPFK++ FVL+DGW+LLV +
Sbjct: 183 LKTAFQIGFLIYLPFLVIDLVVASVLMAMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGS 242
Query: 241 LVKSF 245
LV+SF
Sbjct: 243 LVQSF 247
>gnl|CDD|34400 COG4790, EscR, Type III secretory pathway, component EscR
[Intracellular trafficking and secretion].
Length = 214
Score = 149 bits (377), Expect = 8e-37
Identities = 77/204 (37%), Positives = 124/204 (60%), Gaps = 2/204 (0%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT- 102
+ +LS+ P +++M T F +F +VFS+LR +G+ VPPN+ + +AL ++ +VM+P
Sbjct: 9 AVLFLLSLLPFIVVMGTSFLKFSVVFSLLRNALGVQQVPPNMALYGVALILSMFVMAPVG 68
Query: 103 LDRSIEMGIQPLMNNQITETT-AIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDI 161
L + + L I + P+ F++ NT E+++S F A
Sbjct: 69 LQIYDRLQNEELSYTNIASVVKFDDKGLSPYRDFLKKNTEEEEVSFFERSAQKKWPEEYA 128
Query: 162 TKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISL 221
K IL+P+F +SEL +F+IGFL+ LPF++ID+I++ I++A+GMMM+ P +ISL
Sbjct: 129 EKLKPDSLFILLPAFTLSELTSAFKIGFLLYLPFIVIDLIISNILLALGMMMVSPVTISL 188
Query: 222 PFKVIFFVLIDGWSLLVENLVKSF 245
PFK++ FVL+DGWSLL LV S+
Sbjct: 189 PFKLLLFVLMDGWSLLSHGLVLSY 212
>gnl|CDD|145017 pfam01654, Bac_Ubq_Cox, Bacterial Cytochrome Ubiquinol Oxidase.
This family are the alternative oxidases found in many
bacteria which oxidize ubiquinol and reduce oxygen as
part of the electron transport chain. This family is the
subunit I of the oxidase E. coli has two copies of the
oxidase, bo and bd', both of which are represented here
In some nitrogen fixing bacteria, e.g. Klebsiella
pneumoniae this oxidase is responsible for removing
oxygen in microaerobic conditions, making the oxidase
required for nitrogen fixation. This subunit binds a
single b-haem, through ligands at His186 and Met393
(using SW:P11026 numbering). In addition His19 is a
ligand for the haem b found in subunit II.
Length = 430
Score = 30.1 bits (69), Expect = 0.50
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 67 IVFSILRTGMGMGSVPPNLVIISLALFMTFY 97
V+ +LRT + V V+ SL F Y
Sbjct: 379 TVYGLLRTADAVSPVSAGQVLFSLIGFTLLY 409
>gnl|CDD|36027 KOG0809, KOG0809, KOG0809, SNARE protein TLG2/Syntaxin 16
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 305
Score = 29.9 bits (67), Expect = 0.58
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 95 TFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWV 134
D IEM + + +T + + P WV
Sbjct: 21 QPLGDRSGDDPVIEMATSLVNEAEEGKTVSDEDGLPPAWV 60
>gnl|CDD|112412 pfam03594, BenE, Benzoate membrane transport protein.
Length = 378
Score = 29.6 bits (67), Expect = 0.76
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 3 RYCFFALFLVTPELVFAKSSLHDVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCF 62
RY A+ LV +H +P +L+ WI F LS+A + L +V
Sbjct: 164 RYAVLAVLLVGVAAAALLGQVHPA-PLPLELARPQWITPEFSWQATLSLA-LPLYLVAMT 221
Query: 63 PRFIIVFSILRTGMGMG-SVPPNLVIISLALF 93
+ + ++L+ G PP+ +I++ L
Sbjct: 222 SQNLPGIAVLKAA---GYQTPPSPLIVATGLA 250
>gnl|CDD|34564 COG4956, COG4956, Integral membrane protein (PIN domain
superfamily) [General function prediction only].
Length = 356
Score = 26.7 bits (59), Expect = 5.5
Identities = 30/152 (19%), Positives = 57/152 (37%), Gaps = 26/152 (17%)
Query: 31 ADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISL 90
L ++T + T G+ L IA +L P F++ + T ++ + L
Sbjct: 74 RKLPVTTILFGTIGLIIGLLIAVLLS-----SPLFLLPIPFIST----------IIPVIL 118
Query: 91 ALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMD 150
+ + ++ + E L+N E + E + D S+ +D
Sbjct: 119 TIILAYFGFQLADKKRDEFLR--LLNPNRREAMKKEEEGE----VKPKKPKILDTSVIID 172
Query: 151 MAHSSHRNTDITKNDHIEYRILIPSFMISELR 182
R DI + +E I+IP F++ EL+
Sbjct: 173 -----GRIADILQTGFLEGTIIIPQFVLLELQ 199
>gnl|CDD|31462 COG1271, CydA, Cytochrome bd-type quinol oxidase, subunit 1 [Energy
production and conversion].
Length = 457
Score = 26.7 bits (59), Expect = 6.5
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 32 DLSISTWIVRTFGIFTILSIAPILL-IMVTCFPRFI-IVFSILRTGMGMGSVPPNLVIIS 89
+ S W+++ + L I +VT R +V+ +L+T + +V V+ S
Sbjct: 354 RIDQSKWLLKALILAIPLPWIAIEAGWIVTEVGRQPWVVYGVLKTDVVSSAVTAGSVLFS 413
Query: 90 LALFMTFYV 98
L LFM Y
Sbjct: 414 LILFMVLYT 422
>gnl|CDD|177096 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 26.2 bits (58), Expect = 8.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 161 ITKNDHIEYRILIPS--FMISELRRSFEIGFLIIL 193
I +N+ I +LI S +++SELR S F I+L
Sbjct: 188 IQQNNSIRSNVLIRSNKYLVSELRNSMARIFSILL 222
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.333 0.144 0.432
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,111,282
Number of extensions: 174039
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 88
Length of query: 246
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,297,318
Effective search space: 666084290
Effective search space used: 666084290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (25.3 bits)