RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780372|ref|YP_003064785.1| flagellar biosynthesis protein
FliP [Candidatus Liberibacter asiaticus str. psy62]
(246 letters)
>gnl|CDD|180209 PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.
Length = 245
Score = 276 bits (709), Expect = 4e-75
Identities = 101/221 (45%), Positives = 150/221 (67%), Gaps = 5/221 (2%)
Query: 25 DVMNIPADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPN 84
+++ + ++ + T+LS+AP +L+M+T F R IIV S+LR +G PPN
Sbjct: 28 NLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPN 87
Query: 85 LVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKD 144
V+I LALF+TF++MSP D+ + IQP ++ +IT A++R A P FM TREKD
Sbjct: 88 QVLIGLALFLTFFIMSPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKD 147
Query: 145 LSLFMDMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVAT 204
L+LF +A + + +L+P+F++SEL+ +F+IGFLI LPFLIID++VA+
Sbjct: 148 LALFAKLA-----GEPPKTPEDVPLSVLVPAFVLSELKTAFQIGFLIFLPFLIIDLVVAS 202
Query: 205 IVMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
++M+MGMMMLPP ISLPFK++ FVL+DGW+LLV +LV+SF
Sbjct: 203 VLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSF 243
>gnl|CDD|171720 PRK12783, fliP, flagellar biosynthesis protein FliP; Reviewed.
Length = 255
Score = 250 bits (639), Expect = 3e-67
Identities = 125/216 (57%), Positives = 160/216 (74%), Gaps = 2/216 (0%)
Query: 30 PADLSISTWIVRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIIS 89
P + + S I++ + T+LS+AP LL+MVT F RF + S LR+G+G+ S P NL ++S
Sbjct: 41 PGNGAASGRIIQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVS 100
Query: 90 LALFMTFYVMSPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFM 149
LALFMTFYVM+PT DR+ G++PL N+I+E A ++ +PF FM + R KDL F
Sbjct: 101 LALFMTFYVMAPTFDRAWNEGVKPLQENRISEEEAFGKIVDPFREFMTQHVRPKDLQTFT 160
Query: 150 DMAHSSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAM 209
D+A S + + I+ RILIP+FMISELRR FEIGFLI+LPFL+IDMIVATIVM+M
Sbjct: 161 DLASRSFPKAE--AGEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMIVATIVMSM 218
Query: 210 GMMMLPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
GMMMLPPT ISLPFKV+FFVLIDGW+LLV LV+SF
Sbjct: 219 GMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSF 254
>gnl|CDD|130173 TIGR01103, fliP, flagellar biosynthetic protein FliP. This model
describes bacterial flagellar biogenesis protein fliP,
which is one of the genes in motility locus on the
bacterial chromosome that is involved in structure and
function of bacterial flagellum. It was demonstrated
that mutants in fliP locus were non-flagellated and
non-motile, while revertants were flagellated and
motile.
Length = 197
Score = 241 bits (616), Expect = 1e-64
Identities = 108/201 (53%), Positives = 152/201 (75%), Gaps = 4/201 (1%)
Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
+ T+LS+AP +LIM+T F R +IV SILR+ +G+ S PPN V++ LALF+TF+VM+PT D
Sbjct: 1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFD 60
Query: 105 RSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHSSHRNTDITKN 164
R + QPL++NQI+E A Q+ EP FM TR+KDL+LFM +A +
Sbjct: 61 RIYDDAYQPLLDNQISEQEAYQKAEEPLREFMLRQTRDKDLALFMRLA----KIPKPQTP 116
Query: 165 DHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPFK 224
+ + R+L+P+FM+SEL+ +F+IGFLI +PFLIID++VA+++MAMGMMMLPP ISLPFK
Sbjct: 117 EAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMAMGMMMLPPVMISLPFK 176
Query: 225 VIFFVLIDGWSLLVENLVKSF 245
++ FVL+DGW+LLV +LV+SF
Sbjct: 177 LMLFVLVDGWNLLVGSLVQSF 197
>gnl|CDD|105645 PRK12430, PRK12430, putative bifunctional flagellar biosynthesis
protein FliO/FliP; Provisional.
Length = 379
Score = 177 bits (450), Expect = 3e-45
Identities = 98/207 (47%), Positives = 139/207 (67%), Gaps = 6/207 (2%)
Query: 40 VRTFGIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVM 99
V+T T L+ P L+M+T F R +IVF +LR +G PPN +++ LALF+TF++M
Sbjct: 176 VQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIM 235
Query: 100 SPTLDRSIEMGIQPLMNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH-SSHRN 158
SPT D+ + P +I AI + A P FM N TR DL LF +AH SS++N
Sbjct: 236 SPTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKN 295
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ I RIL+PSF+ SEL+ +F+IGF I +PFLIID++VA+++MA+GMMM+PP++
Sbjct: 296 -----KNEIPMRILLPSFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPST 350
Query: 219 ISLPFKVIFFVLIDGWSLLVENLVKSF 245
ISLPFK++ FVL+DGW LL+ +L SF
Sbjct: 351 ISLPFKLMLFVLVDGWQLLITSLAHSF 377
>gnl|CDD|183754 PRK12797, PRK12797, type III secretion system protein YscR;
Provisional.
Length = 213
Score = 176 bits (450), Expect = 4e-45
Identities = 79/199 (39%), Positives = 125/199 (62%), Gaps = 8/199 (4%)
Query: 49 LSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIE 108
LS+ P++ +M T F + +V S+LR +G+ VPPN+ + LAL +T +VM+P +
Sbjct: 17 LSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQD 76
Query: 109 MGIQPLMNNQITE--TTAIQRVAEPFWVFMRNNTREKDLSLFMDMAH---SSHRNTDITK 163
QP ++ Q + + P F++ +T E++ + F+ A + K
Sbjct: 77 RLQQPPLSLQDPDSVLQLLDAALAPLRDFLKKHTDERERTFFVRSAQRIWPEEAADSLKK 136
Query: 164 NDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTSISLPF 223
+D + ILIP+F +SEL R+FEIGFL+ LPF++ID+I++ I++AMGMMM+ PT+ISLPF
Sbjct: 137 DDLL---ILIPAFTLSELTRAFEIGFLLYLPFIVIDLIISNILLAMGMMMVSPTTISLPF 193
Query: 224 KVIFFVLIDGWSLLVENLV 242
K++ FVL+DGWS L+ LV
Sbjct: 194 KLLLFVLVDGWSRLLHGLV 212
>gnl|CDD|130172 TIGR01102, yscR, type III secretion apparatus protein, YscR/HrcR
family. This model identifies the generic virulence
translocation proteins in bacteria. It derives its
name:'Yop' from Yersinia enterocolitica species, where
this virulence protein was identified. In bacterial
pathogenesis, Yop effector proteins are translocated
into the eukaryotic cells.
Length = 202
Score = 153 bits (389), Expect = 4e-38
Identities = 70/203 (34%), Positives = 120/203 (59%), Gaps = 8/203 (3%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTL 103
+ LS+ P ++++ T F + +V ILR +G+ VPPN+ + +AL ++ +VM+P
Sbjct: 3 AVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVG 62
Query: 104 DRSIEMGIQPL--MNNQITETTAIQRVAEPFWVFMRNNTREKDLSLFMDMAHS---SHRN 158
++ + Q +N ++ P+ F++ NT E +++ F
Sbjct: 63 HQAQDRFHQEPVAYSNIDFLQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQKMWPKEMA 122
Query: 159 TDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMMLPPTS 218
+ K+ + IL+P+F +SEL +F+IGFL+ LPF++ID+IV+ I++A+GMMM+ P +
Sbjct: 123 DRLKKDSLL---ILLPAFTLSELTAAFKIGFLLYLPFIVIDLIVSNILLALGMMMVSPMT 179
Query: 219 ISLPFKVIFFVLIDGWSLLVENL 241
ISLPFK++ FVLIDGWS L+ L
Sbjct: 180 ISLPFKLLLFVLIDGWSRLLHGL 202
>gnl|CDD|181994 PRK09617, PRK09617, type III secretion system protein; Reviewed.
Length = 243
Score = 149 bits (378), Expect = 6e-37
Identities = 71/212 (33%), Positives = 123/212 (58%), Gaps = 11/212 (5%)
Query: 45 IFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLD 104
I L+++P L++++T F + IIV S+LR +G+ PP+ V+ +AL ++ Y+M PT
Sbjct: 31 ILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGV 90
Query: 105 RSIEMGIQPLMNNQITET-----------TAIQRVAEPFWVFMRNNTREKDLSLFMDMAH 153
+ + +N + + A + EP F+ NT + ++ F ++
Sbjct: 91 AMYNDAQKGIESNAVPRSLFSAEGAETVFVAANKSKEPLRSFLIKNTPKPQIASFYKISQ 150
Query: 154 SSHRNTDITKNDHIEYRILIPSFMISELRRSFEIGFLIILPFLIIDMIVATIVMAMGMMM 213
+ ++ I+IP+F++ +L+ +FEIG LI LPF +ID++ A +++AMGMMM
Sbjct: 151 KTFPPEIRDALTPSDFMIIIPAFIMGQLKNAFEIGVLIYLPFFVIDLVTANVLLAMGMMM 210
Query: 214 LPPTSISLPFKVIFFVLIDGWSLLVENLVKSF 245
L P SISLP K++ V++DGW+LL+E L+ SF
Sbjct: 211 LSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
>gnl|CDD|183753 PRK12796, spaP, type III secretion system protein SpaP;
Provisional.
Length = 221
Score = 112 bits (281), Expect = 1e-25
Identities = 59/217 (27%), Positives = 119/217 (54%), Gaps = 30/217 (13%)
Query: 44 GIFTILSIAPILLIMVTCFPRFIIVFSILRTGMGMGSVPPNLVIISLALFMTFYVMSPT- 102
+ + ++ P ++ TCF +F IVF ++R +G+ VP N+ + +AL ++ +VM P
Sbjct: 9 ALLSFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVI 68
Query: 103 -------LDRSIEMG----IQPLMNNQITETTA-IQRVAEPFWVFMRNNTREKDLSLFMD 150
+ ++ + ++ + + + ++P +L F +
Sbjct: 69 QDIYVYFQNEPVDFNNIASVVKFVDEGLGGYRDYLIKYSDP------------ELVRFFE 116
Query: 151 MAHSSHRNTDITK-NDHIEYRI----LIPSFMISELRRSFEIGFLIILPFLIIDMIVATI 205
A D + NDH + I L+P++ +SE++ +F+IGF + LPF+++D++V+++
Sbjct: 117 RAQKKRSYGDEAEANDHDKDEISLFSLLPAYALSEIKSAFKIGFYLYLPFVVVDLVVSSV 176
Query: 206 VMAMGMMMLPPTSISLPFKVIFFVLIDGWSLLVENLV 242
++A+GMMM+ P +IS+P K+I FV +DGW+LL + L+
Sbjct: 177 LLALGMMMMSPVTISVPIKLILFVAMDGWTLLSKGLI 213
>gnl|CDD|178498 PLN02910, PLN02910, polygalacturonate
4-alpha-galacturonosyltransferase.
Length = 657
Score = 31.1 bits (70), Expect = 0.27
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%)
Query: 73 RTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRS---IEMGIQPLMNNQITETTAI 125
RT +GS+PP L+ TFY ++ LDRS + +G P +N E A+
Sbjct: 570 RTLWKLGSLPPGLI--------TFYNLTYPLDRSWHVLGLGYDPALNQTEIENAAV 617
>gnl|CDD|132446 TIGR03405, Phn_Fe-ADH, phosphonate metabolism-associated
iron-containing alcohol dehydrogenase.
2-hydroxyethylphosphonate (2-HEP), the presumed product
of the reaction of Pald with an alcohol dehydrogenase,
is a biologically novel but reasonable analog of 2-AEP
and may be a constituent of as-yet undescribed natural
products. In the case of Azoarcus, downstream of the
dehydrogenase is a CDP-glycerol:glycerophosphate
transferase homolog that may indicate the existence of a
pathway for 2-HEP-derived phosphonolipid biosynthesis.
Length = 355
Score = 30.6 bits (69), Expect = 0.43
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 83 PNLVIISLALFMTF---YVMSPTLDRSIEMGIQPLMN---NQITETTAIQRVAEPFWVFM 136
P I+ AL ++ + +S LD ++ ++ + N N ++ AIQ A+
Sbjct: 166 PEAAIVDAALMLSLPREHTLSTGLD-ALSHALESIWNVNANPVSRGLAIQAAADISRALP 224
Query: 137 RNNTREKDLSLFMDMAHSSHR 157
+ DL+L DMA ++ +
Sbjct: 225 EVLAQPGDLALRSDMALAALK 245
>gnl|CDD|182995 PRK11146, PRK11146, outer membrane-specific lipoprotein transporter
subunit LolE; Provisional.
Length = 412
Score = 27.6 bits (62), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 28 NIPADLSISTWIVRTFG--------IFTILSIAPILLIMVTCF 62
+ + I +WI T+G I TI+ +A +L+I V CF
Sbjct: 242 VTNSYVYIKSWI-GTYGYMYRDIQMIRTIMYLAMVLVIGVACF 283
>gnl|CDD|183736 PRK12772, PRK12772, bifunctional flagellar biosynthesis protein
FliR/FlhB; Provisional.
Length = 609
Score = 26.9 bits (60), Expect = 4.8
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 178 ISELRRSFEIGFLIILPFLIIDMIVATIVMAMG---MMMLPPTSISLP---------FKV 225
I+E+ +GF+ L F+ + + + + + +G M M PTS S F
Sbjct: 71 INEILTGLILGFITNLCFVCVRIAGSMMDLQVGFSMMTMFDPTSNSNTTLIERLLYWFST 130
Query: 226 IFFVLIDGWSLLVENLVKSF 245
+ F +IDG +L+ LV+SF
Sbjct: 131 VIFFIIDGHHMLIRALVESF 150
>gnl|CDD|148940 pfam07598, DUF1561, Protein of unknown function (DUF1561). A
family of paralogous proteins in Leptospira interrogans.
Length = 631
Score = 26.1 bits (58), Expect = 7.8
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 71 ILRTGMGMGSVPPNLVIISLALFMTFYVMSPTLDRSIEMGIQPLMNNQ-------ITETT 123
ILRT G+ +P N +SL + ++PT + ++NN + T
Sbjct: 531 ILRTSQGLVVIPTNTSNMSLEQYRRA--LTPT------TDPEEVINNLLEGGTRTLYSLT 582
Query: 124 AIQRVAE---PFWVFM--RNNTREKD 144
IQ V P +++ RN T E D
Sbjct: 583 TIQLVGLYENPLDLYISQRNCTGEGD 608
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.333 0.144 0.432
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,088,025
Number of extensions: 265542
Number of successful extensions: 1077
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1053
Number of HSP's successfully gapped: 81
Length of query: 246
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 155
Effective length of database: 4,028,145
Effective search space: 624362475
Effective search space used: 624362475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 56 (25.6 bits)