HHsearch alignment for GI: 254780373 and conserved domain: COG1580

>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion].
Probab=99.97  E-value=8.5e-30  Score=181.69  Aligned_cols=97  Identities=16%  Similarity=0.312  Sum_probs=87.1

Q ss_pred             CCCCCEEECCCCEEEEECC-CCCEEEEEEEEEEECCC----HHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH
Q ss_conf             3335302103320242058-98338999999850440----245421899999999984189889508899999999999
Q gi|254780373|r   76 SLKKLQIFSLQPIITNFDS-SPKDWLRLDIALICKDI----PDKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIE  150 (172)
Q Consensus        76 ~~~~~~~~~l~~fvvNL~~-~~~r~lk~~i~l~~~~~----~~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~  150 (172)
T Consensus        56 ~~~~~~~~~~~~~t~Nl~~~~~~~~v~i~i~l~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~  135 (159)
T COG1580          56 VEILAYYYLLEEFTTNLLDGPKDRYVKIAITLEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIK  135 (159)
T ss_pred             CCCCCEEEECCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHH
T ss_conf             87554465225504562668874799999988608888999999756899999999997178988368221899999999


Q ss_pred             HHHH-HHCCC-CEEEEEEEEEECC
Q ss_conf             9985-42356-3125764322019
Q gi|254780373|r  151 ERVK-LRSQG-FVSSVIFRTFIIA  172 (172)
Q Consensus       151 ~~in-~~~~g-~V~~V~Ft~fVv~  172 (172)
T Consensus       136 ~~in~~L~~g~~V~dV~fT~fiiq  159 (159)
T COG1580         136 DRINTILKEGQVVKDVLFTNFIIQ  159 (159)
T ss_pred             HHHHHHHHCCCEEEEEEEEHHHCC
T ss_conf             999899845872677855513119