HHsearch alignment for GI: 254780373 and conserved domain: COG1580
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion].
Probab=99.97 E-value=8.5e-30 Score=181.69 Aligned_cols=97 Identities=16% Similarity=0.312 Sum_probs=87.1
Q ss_pred CCCCCEEECCCCEEEEECC-CCCEEEEEEEEEEECCC----HHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHH
Q ss_conf 3335302103320242058-98338999999850440----245421899999999984189889508899999999999
Q gi|254780373|r 76 SLKKLQIFSLQPIITNFDS-SPKDWLRLDIALICKDI----PDKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIE 150 (172)
Q Consensus 76 ~~~~~~~~~l~~fvvNL~~-~~~r~lk~~i~l~~~~~----~~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~ 150 (172)
T Consensus 56 ~~~~~~~~~~~~~t~Nl~~~~~~~~v~i~i~l~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~t~~Gke~Lk~ei~ 135 (159)
T COG1580 56 VEILAYYYLLEEFTTNLLDGPKDRYVKIAITLEVANKALLEELEEKKPEVRDALLMLFSSKTAAELSTPEGKEKLKAEIK 135 (159)
T ss_pred CCCCCEEEECCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHHH
T ss_conf 87554465225504562668874799999988608888999999756899999999997178988368221899999999
Q ss_pred HHHH-HHCCC-CEEEEEEEEEECC
Q ss_conf 9985-42356-3125764322019
Q gi|254780373|r 151 ERVK-LRSQG-FVSSVIFRTFIIA 172 (172)
Q Consensus 151 ~~in-~~~~g-~V~~V~Ft~fVv~ 172 (172)
T Consensus 136 ~~in~~L~~g~~V~dV~fT~fiiq 159 (159)
T COG1580 136 DRINTILKEGQVVKDVLFTNFIIQ 159 (159)
T ss_pred HHHHHHHHCCCEEEEEEEEHHHCC
T ss_conf 999899845872677855513119