HHsearch alignment for GI: 254780373 and conserved domain: PRK08455
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=100.00 E-value=1.9e-40 Score=239.69 Aligned_cols=170 Identities=15% Similarity=0.221 Sum_probs=112.4
Q ss_pred CCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCC
Q ss_conf 9854355323-467632059999999999999999999999706787652012455653101122333--3334444333
Q gi|254780373|r 1 MSYDDTTSQY-IRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNNFYDNSVR--SVHTGDTISL 77 (172)
Q Consensus 1 ma~~~~~~~~-~kG~~~kl~Iii~~vv~ll~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 77 (172)
T Consensus 1 MAee~e~~e~~~kkk~k~lliIii~vvvlll~~gG~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (180)
T PRK08455 1 MAEEQENTETKPKKKSKALLIIIIGVVVLLLLIGGVIAF-LLMGSSEEEKENAEQPAEEVQANPPANSAQEAKQRSNDFL 79 (180)
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 986543555578887875887349999999999999998-7617898642222345421235677655444444443212
Q ss_pred CCCEEECCCCEEEEECC-CCCEEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHH
Q ss_conf 35302103320242058-983389999998504402----4542189999999998418988950889999999999999
Q gi|254780373|r 78 KKLQIFSLQPIITNFDS-SPKDWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEER 152 (172)
Q Consensus 78 ~~~~~~~l~~fvvNL~~-~~~r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~ 152 (172)
T Consensus 80 ~~~~~~~l~~f~vNl~~~~~~rylq~~i~l~~~~~~~~~~~~~~~p~ird~ii~~ls~~~~~~l~~~~Gk~~Lr~ei~~~ 159 (180)
T PRK08455 80 NIGPMYPLDPFTVNLLSQSGRRYLKTSISLELSNELLKPELDKKDPVIRDTIIRILSSKTVEEVSTNKGKERLKDEIVGK 159 (180)
T ss_pred CCCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHH
T ss_conf 44565456777997778998638999999998688889999986699999999999649998950977899999999999
Q ss_pred HH-HHCCCCEEEEEEEEEEC
Q ss_conf 85-42356312576432201
Q gi|254780373|r 153 VK-LRSQGFVSSVIFRTFII 171 (172)
Q Consensus 153 in-~~~~g~V~~V~Ft~fVv 171 (172)
T Consensus 160 in~~l~~~~V~~V~Ft~fV~ 179 (180)
T PRK08455 160 LNEFLIDGFIKNVFFTDFVV 179 (180)
T ss_pred HHHHHCCCCEEEEEEEEEEE
T ss_conf 99873679557998424176