HHsearch alignment for GI: 254780373 and conserved domain: PRK08455

>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed.
Probab=100.00  E-value=1.9e-40  Score=239.69  Aligned_cols=170  Identities=15%  Similarity=0.221  Sum_probs=112.4

Q ss_pred             CCCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCC--CCCCCCCCCC
Q ss_conf             9854355323-467632059999999999999999999999706787652012455653101122333--3334444333
Q gi|254780373|r    1 MSYDDTTSQY-IRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFILNNFYDNSVR--SVHTGDTISL   77 (172)
Q Consensus         1 ma~~~~~~~~-~kG~~~kl~Iii~~vv~ll~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~   77 (172)
T Consensus         1 MAee~e~~e~~~kkk~k~lliIii~vvvlll~~gG~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (180)
T PRK08455          1 MAEEQENTETKPKKKSKALLIIIIGVVVLLLLIGGVIAF-LLMGSSEEEKENAEQPAEEVQANPPANSAQEAKQRSNDFL   79 (180)
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHH-HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             986543555578887875887349999999999999998-7617898642222345421235677655444444443212


Q ss_pred             CCCEEECCCCEEEEECC-CCCEEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHH
Q ss_conf             35302103320242058-983389999998504402----4542189999999998418988950889999999999999
Q gi|254780373|r   78 KKLQIFSLQPIITNFDS-SPKDWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEER  152 (172)
Q Consensus        78 ~~~~~~~l~~fvvNL~~-~~~r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~  152 (172)
T Consensus        80 ~~~~~~~l~~f~vNl~~~~~~rylq~~i~l~~~~~~~~~~~~~~~p~ird~ii~~ls~~~~~~l~~~~Gk~~Lr~ei~~~  159 (180)
T PRK08455         80 NIGPMYPLDPFTVNLLSQSGRRYLKTSISLELSNELLKPELDKKDPVIRDTIIRILSSKTVEEVSTNKGKERLKDEIVGK  159 (180)
T ss_pred             CCCCCCCCCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHH
T ss_conf             44565456777997778998638999999998688889999986699999999999649998950977899999999999


Q ss_pred             HH-HHCCCCEEEEEEEEEEC
Q ss_conf             85-42356312576432201
Q gi|254780373|r  153 VK-LRSQGFVSSVIFRTFII  171 (172)
Q Consensus       153 in-~~~~g~V~~V~Ft~fVv  171 (172)
T Consensus       160 in~~l~~~~V~~V~Ft~fV~  179 (180)
T PRK08455        160 LNEFLIDGFIKNVFFTDFVV  179 (180)
T ss_pred             HHHHHCCCCEEEEEEEEEEE
T ss_conf             99873679557998424176