HHsearch alignment for GI: 254780373 and conserved domain: pfam03748
>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=99.97 E-value=6.8e-30 Score=182.21 Aligned_cols=92 Identities=22% Similarity=0.443 Sum_probs=85.3
Q ss_pred CEEECCCCEEEEECCCCC-EEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 302103320242058983-389999998504402----454218999999999841898895088999999999999985
Q gi|254780373|r 80 LQIFSLQPIITNFDSSPK-DWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVK 154 (172)
Q Consensus 80 ~~~~~l~~fvvNL~~~~~-r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in 154 (172)
T Consensus 47 ~~~~~l~~~~vNl~~~~~~r~l~~~i~l~~~~~~~~~~~~~~~p~Ird~ii~~l~~~~~~dl~~~~g~~~Lk~~l~~~in 126 (145)
T pfam03748 47 AAYVPLEPFVVNLADDGGTRYLKISIALEVRDPKAAEELEKHMPLIRDAILMLLSSKTAEDLSTPEGKEKLKEELLERIN 126 (145)
T ss_pred CEEEECCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 64886498899826899636999999999768878998886263337999999865882121493379999999999999
Q ss_pred -HHCCCCEEEEEEEEEEC
Q ss_conf -42356312576432201
Q gi|254780373|r 155 -LRSQGFVSSVIFRTFII 171 (172)
Q Consensus 155 -~~~~g~V~~V~Ft~fVv 171 (172)
T Consensus 127 ~~l~~~~V~~V~ft~fVv 144 (145)
T pfam03748 127 EVLLEGEVEDVLFTSFVI 144 (145)
T ss_pred HHHCCCCEEEEEEEEEEE
T ss_conf 873758546998885086