HHsearch alignment for GI: 254780373 and conserved domain: pfam03748

>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=99.97  E-value=6.8e-30  Score=182.21  Aligned_cols=92  Identities=22%  Similarity=0.443  Sum_probs=85.3

Q ss_pred             CEEECCCCEEEEECCCCC-EEEEEEEEEEECCCH----HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             302103320242058983-389999998504402----454218999999999841898895088999999999999985
Q gi|254780373|r   80 LQIFSLQPIITNFDSSPK-DWLRLDIALICKDIP----DKVFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVK  154 (172)
Q Consensus        80 ~~~~~l~~fvvNL~~~~~-r~lk~~i~l~~~~~~----~e~~~p~Ird~il~~L~~~~~~dl~~~~Gk~~Lk~el~~~in  154 (172)
T Consensus        47 ~~~~~l~~~~vNl~~~~~~r~l~~~i~l~~~~~~~~~~~~~~~p~Ird~ii~~l~~~~~~dl~~~~g~~~Lk~~l~~~in  126 (145)
T pfam03748        47 AAYVPLEPFVVNLADDGGTRYLKISIALEVRDPKAAEELEKHMPLIRDAILMLLSSKTAEDLSTPEGKEKLKEELLERIN  126 (145)
T ss_pred             CEEEECCCEEEECCCCCCCEEEEEEEEEEECCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             64886498899826899636999999999768878998886263337999999865882121493379999999999999


Q ss_pred             -HHCCCCEEEEEEEEEEC
Q ss_conf             -42356312576432201
Q gi|254780373|r  155 -LRSQGFVSSVIFRTFII  171 (172)
Q Consensus       155 -~~~~g~V~~V~Ft~fVv  171 (172)
T Consensus       127 ~~l~~~~V~~V~ft~fVv  144 (145)
T pfam03748       127 EVLLEGEVEDVLFTSFVI  144 (145)
T ss_pred             HHHCCCCEEEEEEEEEEE
T ss_conf             873758546998885086