BLAST/PSIBLAST alignment of GI: 254780373 and GI: 116250487 at iteration 1
>gi|116250487|ref|YP_766325.1| FliL flagella related protein [Rhizobium leguminosarum bv. viciae 3841] Length = 168
>gi|115255135|emb|CAK06209.1| method: conceptual translation supplied by author (flil) [Rhizobium leguminosarum bv. viciae 3841] Length = 168
 Score =  114 bits (284), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 65/177 (36%), Positives = 97/177 (54%), Gaps = 16/177 (9%)

Query: 1   MSYDDTTSQYIRGNQHK-----LFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKE-EKYQ 54
           M+  D ++    G  HK     + +    V T +G   GW  G ++     G KE E+ +
Sbjct: 1   MAEPDASA----GQSHKKSGSLMTIIGIAVLTLLGAGGGWAVGTIVAPNIKGAKEVEQAK 56

Query: 55  KFILNNFYDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALICKDIPDK 114
                   +  +        IS +   +  L+PI +N     ++W+RL++AL+    PD 
Sbjct: 57  DAEAKKKAEEGLAR------ISTEANNVVQLEPITSNLAYPSENWVRLEVALLFNGPPDV 110

Query: 115 VFLETLHQDIMAYIRTVSIKQITGAQGFRYFKEDIEERVKLRSQGFVSSVIFRTFII 171
              E +HQDI+AYIRTVS++QI G +GF+Y K+DI+ERV LRSQG VS V+FRTF+I
Sbjct: 111 KVSEDIHQDILAYIRTVSLQQIEGPRGFQYLKDDIQERVDLRSQGRVSKVMFRTFVI 167