RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780373|ref|YP_003064786.1| flagellar basal
body-associated protein FliL [Candidatus Liberibacter asiaticus str.
psy62]
         (172 letters)



>1ls4_A Apolp-III, apolipophorin-III; helix-bundle, exchangeable
           apolipoprotein, lipid transport; NMR {Locusta
           migratoria} (A:)
          Length = 180

 Score = 28.8 bits (63), Expect = 0.41
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 48  QKEEKYQKFI---LNNFYDNSVRSVHTGDTISLKKLQIFSLQPIITNF-----DSSPK 97
           Q+ EK+Q  +   LN F  N   S+H   T    + Q+ SLQ  +TN      D + K
Sbjct: 80  QEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGHQWQDIATK 137


>1aep_A Apolipophorin III; lipoprotein; 2.70A {Locusta migratoria}
           (A:)
          Length = 161

 Score = 28.8 bits (63), Expect = 0.45
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 8/58 (13%)

Query: 48  QKEEKYQKFI---LNNFYDNSVRSVHTGDTISLKKLQIFSLQPIITNF-----DSSPK 97
           Q+ EK+Q  +   LN F  N   S+H   T    + Q+ SLQ  +TN      D + K
Sbjct: 61  QEAEKHQGSVAEQLNAFARNLNNSIHDAATSLNLQDQLNSLQSALTNVGHQWQDIATK 118


>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel,
           biosynthetic protein; 2.21A {Lactococcus lactis subsp}
           (A:1-131,A:322-409)
          Length = 219

 Score = 27.2 bits (60), Expect = 1.4
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 3   YDDTTSQYIRGNQHKLFVTWFVVYTFIGIFCGWLGGIVMLFLFAGQKEEKYQKFI--LNN 60
           Y      YI     KL            ++ G   GI +  L   + +EKY+  +  LN 
Sbjct: 56  YQKKIDNYIEYIVSKLSTYGL---LTGSLYSG-AAGIALSILHLREDDEKYKNLLDSLNR 111

Query: 61  FYDNSVR 67
           + +  VR
Sbjct: 112 YIEYFVR 118


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.328    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,314,156
Number of extensions: 54499
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 14
Length of query: 172
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 90
Effective length of database: 2,184,039
Effective search space: 196563510
Effective search space used: 196563510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.7 bits)