RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780373|ref|YP_003064786.1| flagellar basal body-associated protein FliL [Candidatus Liberibacter asiaticus str. psy62] (172 letters) >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 40.0 bits (92), Expect = 3e-04 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 11/34 (32%) Query: 76 SLKKLQIFSLQPIITNFDSSPKDWLRLDIALICK 109 +LKKLQ SL+ + + DS+P AL K Sbjct: 21 ALKKLQA-SLK-LYAD-DSAP--------ALAIK 43 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 31.1 bits (70), Expect = 0.15 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 32/100 (32%) Query: 61 FYDNSVRSVHTGDT----ISLKKLQIF---SLQPIITNFDS--------SPKDWLRLDIA 105 F+ + +++ T I ++ + + SL P I DS SP L I Sbjct: 292 FFVSVRKAI----TVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPM----LSI- 341 Query: 106 LICKDIPDKVFLETLHQDIMAYI---RTVSIKQITGAQGF 142 ++ + ++ +++ + V I + GA+ Sbjct: 342 ---SNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377 Score = 25.7 bits (56), Expect = 5.5 Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 59/157 (37%) Query: 44 LFAGQKE-EKYQKFI-LNNFYDNSVRSVHTGDTI-SLKKLQIFSLQPIITNFDSSPK--- 97 +F GQ + Y F L + Y V GD I + L +I + K Sbjct: 159 IFGGQGNTDDY--FEELRDLYQ--TYHVLVGDLIKFSAET----LSELIRTTLDAEKVFT 210 Query: 98 ------DWLRLDIALICKDIPDKVFLET---------LHQDIMA-YIRTVSIKQITGAQ- 140 +WL PDK +L + + Q +A Y+ V+ K + G Sbjct: 211 QGLNILEWLENPSN-----TPDKDYLLSIPISCPLIGVIQ--LAHYV--VTAK-LLGFTP 260 Query: 141 GFRYFKEDIEERVKLR-----SQGFVSSVIFRTFIIA 172 G E R L+ SQG V++V IA Sbjct: 261 G--------ELRSYLKGATGHSQGLVTAV-----AIA 284 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 2ocd_A Length = 358 Score = 25.1 bits (54), Expect = 9.2 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 2/69 (2%) Query: 60 NFYDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALICKDIPDKVFLET 119 + + + I P++ + D +P+DW + I D Sbjct: 49 GHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHI-AEDIKAHYDDYDGFVI 107 Query: 120 LH-QDIMAY 127 LH D MAY Sbjct: 108 LHGTDTMAY 116 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.328 0.143 0.433 Gapped Lambda K H 0.267 0.0598 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,497,286 Number of extensions: 64153 Number of successful extensions: 223 Number of sequences better than 10.0: 1 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 12 Length of query: 172 Length of database: 5,693,230 Length adjustment: 86 Effective length of query: 86 Effective length of database: 3,608,246 Effective search space: 310309156 Effective search space used: 310309156 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 53 (24.5 bits)