RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780373|ref|YP_003064786.1| flagellar basal
body-associated protein FliL [Candidatus Liberibacter asiaticus str.
psy62]
         (172 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 11/34 (32%)

Query: 76  SLKKLQIFSLQPIITNFDSSPKDWLRLDIALICK 109
           +LKKLQ  SL+ +  + DS+P        AL  K
Sbjct: 21  ALKKLQA-SLK-LYAD-DSAP--------ALAIK 43


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.1 bits (70), Expect = 0.15
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 32/100 (32%)

Query: 61  FYDNSVRSVHTGDT----ISLKKLQIF---SLQPIITNFDS--------SPKDWLRLDIA 105
           F+ +  +++    T    I ++  + +   SL P I   DS        SP     L I 
Sbjct: 292 FFVSVRKAI----TVLFFIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPM----LSI- 341

Query: 106 LICKDIPDKVFLETLHQDIMAYI---RTVSIKQITGAQGF 142
               ++  +  ++       +++   + V I  + GA+  
Sbjct: 342 ---SNLT-QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL 377



 Score = 25.7 bits (56), Expect = 5.5
 Identities = 37/157 (23%), Positives = 54/157 (34%), Gaps = 59/157 (37%)

Query: 44  LFAGQKE-EKYQKFI-LNNFYDNSVRSVHTGDTI-SLKKLQIFSLQPIITNFDSSPK--- 97
           +F GQ   + Y  F  L + Y      V  GD I    +     L  +I     + K   
Sbjct: 159 IFGGQGNTDDY--FEELRDLYQ--TYHVLVGDLIKFSAET----LSELIRTTLDAEKVFT 210

Query: 98  ------DWLRLDIALICKDIPDKVFLET---------LHQDIMA-YIRTVSIKQITGAQ- 140
                 +WL           PDK +L +         + Q  +A Y+  V+ K + G   
Sbjct: 211 QGLNILEWLENPSN-----TPDKDYLLSIPISCPLIGVIQ--LAHYV--VTAK-LLGFTP 260

Query: 141 GFRYFKEDIEERVKLR-----SQGFVSSVIFRTFIIA 172
           G        E R  L+     SQG V++V      IA
Sbjct: 261 G--------ELRSYLKGATGHSQGLVTAV-----AIA 284


>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
           2p2n_A 2ocd_A
          Length = 358

 Score = 25.1 bits (54), Expect = 9.2
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 2/69 (2%)

Query: 60  NFYDNSVRSVHTGDTISLKKLQIFSLQPIITNFDSSPKDWLRLDIALICKDIPDKVFLET 119
                 +  +       +    I    P++ + D +P+DW  +    I     D      
Sbjct: 49  GHLQRQLALMPEFHRPEMPDFTIHEYTPLMDSSDMTPEDWQHI-AEDIKAHYDDYDGFVI 107

Query: 120 LH-QDIMAY 127
           LH  D MAY
Sbjct: 108 LHGTDTMAY 116


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.328    0.143    0.433 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,497,286
Number of extensions: 64153
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 220
Number of HSP's successfully gapped: 12
Length of query: 172
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 86
Effective length of database: 3,608,246
Effective search space: 310309156
Effective search space used: 310309156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)