HHsearch alignment for GI: 254780374 and conserved domain: COG2063
>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion].
Probab=100.00 E-value=0 Score=415.84 Aligned_cols=225 Identities=35% Similarity=0.505 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99999999985433672002568753667777664444564455544444445576121577552112322367687699
Q gi|254780374|r 6 FIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALNVGDILT 85 (238)
Q Consensus 6 l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~VGDIiT 85 (238)
T Consensus 4 ~~~~~~l~~la~c~~---e~~~~p~~~p~~~~~~~a~~-~~~~~~p~~p~~~~~~~sl~~~~~~~Lf~D~RA~~vGDilT 79 (230)
T COG2063 4 LYALLALGLLAGCGT---ECAKVPPLSPIVPGATVAQP-PQPGPAPIQPGSIFQGYSLWNYGYQPLFEDRRASNVGDILT 79 (230)
T ss_pred HHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE
T ss_conf 379999999987326---53168875546788542437-76555677887634543556733220122543256898799
Q ss_pred EEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECC
Q ss_conf 99972410100001222345654455543334554--4556665546555554321100000001489999999999807
Q gi|254780374|r 86 VDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG--QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILE 163 (238)
Q Consensus 86 V~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~Vlp 163 (238)
T Consensus 80 Vvi~E~~~As~~~~t~~~r~~~~~~~~~~~~g~~~~~~~~~d~~~-~~~~s~n~~~G~g~~~~s~~l~~tIta~V~~VLp 158 (230)
T COG2063 80 IVIQENTSASKSSSTNRSRKNSTGFGLTAVGGVLLGGNNGGDDSS-YETSSNNDFKGKGGAKRSESLTGTITATVVQVLP 158 (230)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf 999854520200232101236788672333120347556787024-2225886656775533234279999999999868
Q ss_pred CCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHH
Q ss_conf 972899788779841887999999798477678997382420554399980203312334866689999985
Q gi|254780374|r 164 NGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENL 235 (238)
Q Consensus 164 NGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i 235 (238)
T Consensus 159 NGNL~I~G~Kev~vN~~~e~i~vsGvVRP~DI~~~NtI~S~~IAdARI~Y~G~G~lse~q~~gwlq~~~~~l 230 (230)
T COG2063 159 NGNLVIEGEKEVRVNGEKEIIRVSGVVRPDDISGDNTISSTRIADARIEYGGRGYLSEAQQPGWLQRFFLAL 230 (230)
T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEEECHHCCCCCCEECCHHEEEEEEEECCCEEECCCCCCCHHHHHHHHC
T ss_conf 997899977999977844899994268601057777143101132589865725663466865899998529