HHsearch alignment for GI: 254780374 and conserved domain: COG2063

>COG2063 FlgH Flagellar basal body L-ring protein [Cell motility and secretion].
Probab=100.00  E-value=0  Score=415.84  Aligned_cols=225  Identities=35%  Similarity=0.505  Sum_probs=189.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf             99999999985433672002568753667777664444564455544444445576121577552112322367687699
Q gi|254780374|r    6 FIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALNVGDILT   85 (238)
Q Consensus         6 l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~VGDIiT   85 (238)
T Consensus         4 ~~~~~~l~~la~c~~---e~~~~p~~~p~~~~~~~a~~-~~~~~~p~~p~~~~~~~sl~~~~~~~Lf~D~RA~~vGDilT   79 (230)
T COG2063           4 LYALLALGLLAGCGT---ECAKVPPLSPIVPGATVAQP-PQPGPAPIQPGSIFQGYSLWNYGYQPLFEDRRASNVGDILT   79 (230)
T ss_pred             HHHHHHHHHHHHHHH---HHCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCEEE
T ss_conf             379999999987326---53168875546788542437-76555677887634543556733220122543256898799


Q ss_pred             EEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECC
Q ss_conf             99972410100001222345654455543334554--4556665546555554321100000001489999999999807
Q gi|254780374|r   86 VDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFG--QQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILE  163 (238)
Q Consensus        86 V~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~Vlp  163 (238)
T Consensus        80 Vvi~E~~~As~~~~t~~~r~~~~~~~~~~~~g~~~~~~~~~d~~~-~~~~s~n~~~G~g~~~~s~~l~~tIta~V~~VLp  158 (230)
T COG2063          80 IVIQENTSASKSSSTNRSRKNSTGFGLTAVGGVLLGGNNGGDDSS-YETSSNNDFKGKGGAKRSESLTGTITATVVQVLP  158 (230)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-HHCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECC
T ss_conf             999854520200232101236788672333120347556787024-2225886656775533234279999999999868


Q ss_pred             CCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHH
Q ss_conf             972899788779841887999999798477678997382420554399980203312334866689999985
Q gi|254780374|r  164 NGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENL  235 (238)
Q Consensus       164 NGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i  235 (238)
T Consensus       159 NGNL~I~G~Kev~vN~~~e~i~vsGvVRP~DI~~~NtI~S~~IAdARI~Y~G~G~lse~q~~gwlq~~~~~l  230 (230)
T COG2063         159 NGNLVIEGEKEVRVNGEKEIIRVSGVVRPDDISGDNTISSTRIADARIEYGGRGYLSEAQQPGWLQRFFLAL  230 (230)
T ss_pred             CCCEEEEEEEEEEECCCEEEEEEEEEECHHCCCCCCEECCHHEEEEEEEECCCEEECCCCCCCHHHHHHHHC
T ss_conf             997899977999977844899994268601057777143101132589865725663466865899998529