HHsearch alignment for GI: 254780374 and conserved domain: PRK00249
>PRK00249 flgH flagellar basal body L-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=464.04 Aligned_cols=227 Identities=37% Similarity=0.546 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 79999999999854336720025687536677776644445644555444444455761215775521123223676876
Q gi|254780374|r 4 YSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSHAALFKDSRALNVGDI 83 (238)
Q Consensus 4 ~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~~~lf~D~RA~~VGDI 83 (238)
T Consensus 5 ~~~~~~~~~~~LsgCa~~~~~-~~~p~~~p~~~~~~~p~~~~~-----~~~Gsiy~~~sl~~~~~~~Lf~D~RA~~VGDi 78 (231)
T PRK00249 5 LIALALLLLLLLSGCASIPPK-PLIPALAPPTSPTPLPGYAPV-----EPNGSIFQAGSLWNYGYRPLFKDRRARNVGDI 78 (231)
T ss_pred HHHHHHHHHHHHHHCCCCCCC-CCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 999999999998753489998-888776898888788876777-----89887457645546555635123443789996
Q ss_pred EEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEEEEECC
Q ss_conf 99999724101000012223456544555433345544556665546555554321100000001489999999999807
Q gi|254780374|r 84 LTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIVTAILE 163 (238)
Q Consensus 84 iTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V~~Vlp 163 (238)
T Consensus 79 iTV~i~E~~~As~~~~t~~~r~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~f~G~G~~~~s~~ltgtIta~V~~Vlp 156 (231)
T PRK00249 79 LTVVLQENTSASKSNSTNRSRDGSESFGLPSLFGYLQGG--DANASLETSSDNSFKGKGSANRSNTLSGTITVTVTQVLP 156 (231)
T ss_pred EEEEEEECCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEEEEEECC
T ss_conf 999999704011035643144565454774325665666--665443345553135654111001589999999999878
Q ss_pred CCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf 972899788779841887999999798477678997382420554399980203312334866689999985589
Q gi|254780374|r 164 NGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIENLSPL 238 (238)
Q Consensus 164 NGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~~i~Pl 238 (238)
T Consensus 157 NGnL~I~G~K~v~vN~e~e~i~~sGvVRP~DI~~~NtV~S~~IAdArI~Y~G~G~l~d~~~~gWl~r~~~~i~PF 231 (231)
T PRK00249 157 NGNLVIRGEKEVRVNQGDEFLRVSGVVRPRDISGDNTISSTRIADARISYGGRGAISDAQQPGWGQRFFDSLSPF 231 (231)
T ss_pred CCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 996899999999989988999999999978889997596104244799980201315233679999998861899