HHsearch alignment for GI: 254780374 and conserved domain: PRK12696
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=464.55 Aligned_cols=225 Identities=32% Similarity=0.440 Sum_probs=192.5
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC
Q ss_conf 91179999999999854336720025687536677776644445644555444444455761215775-52112322367
Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCHSSISEITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSH-AALFKDSRALN 79 (238)
Q Consensus 1 M~r~~l~~l~~~~lL~GCas~~~~~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~-~~lf~D~RA~~ 79 (238)
T Consensus 1 mm~~~l~~~~~~~~L~GC~~~~~~~~~~~~~~p-------------p~~~~~p~~~~~~~GSl~~~~~~~~LF~D~RA~~ 67 (238)
T PRK12696 1 MIRKLLAASCAVLLLSGCNAARQQPSPLPPVTP-------------PQAYVEPEDAAANPGSLFSDAEADLLFSDSRARR 67 (238)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 958999999999995165688888888899889-------------9776676667899986455898775535553356
Q ss_pred CCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCCCCCCCCHHEECE
Q ss_conf 68769999972410100001222345654455543334554455------------666554655555432110000000
Q gi|254780374|r 80 VGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQT------------PQMNGNLNYDGGGASSGKGSISRA 147 (238)
Q Consensus 80 VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~G~~~~~ 147 (238)
T Consensus 68 VGDilTV~i~E~t~A~~sa~t~~~r~ss~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~f~G~G~~~~s 147 (238)
T PRK12696 68 VGDIVLVKIVENAKAKNKADTTADKDSTNEYGVSAFFGQSSASINPMNPVGAFGGKVGTNPLLQTSSKSKLSGTGETKRE 147 (238)
T ss_pred CCCEEEEEEEEECHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
T ss_conf 89869999998145432036441445565547641136543234655444445666565422234554434565301001
Q ss_pred EEEEEEEEEEEEEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCH
Q ss_conf 14899999999998079728997887798418879999997984776789973824205543999802033123348666
Q gi|254780374|r 148 EKLNLLIAAIVTAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPI 227 (238)
Q Consensus 148 ~~l~~~isa~V~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gw 227 (238)
T Consensus 148 ~~lt~tIaa~Vv~VLpNGnL~I~G~k~v~vn~~~~~i~~sGiVrp~DI~~~NtV~S~~iAdarI~y~G~G~l~d~q~~gW 227 (238)
T PRK12696 148 NTVTATIAARVLRVMPGGLLQVEGARETRVNDETQYIVVSGLVRSRDVASDNSVMSTQMADARIAYYGKGVLADKQRPGW 227 (238)
T ss_pred CEEEEEEEEEEEEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCCEEECCCCCCCH
T ss_conf 35899999999998779959999989999889889999999988899799986961032547999812012364436699
Q ss_pred HHHHHHHHCCC
Q ss_conf 89999985589
Q gi|254780374|r 228 GHQLIENLSPL 238 (238)
Q Consensus 228 l~r~~~~i~Pl 238 (238)
T Consensus 228 l~r~~~~v~PF 238 (238)
T PRK12696 228 FTRLMDNLWPF 238 (238)
T ss_pred HHHHHHHCCCC
T ss_conf 99997620899