HHsearch alignment for GI: 254780374 and conserved domain: PRK12698
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed.
Probab=100.00 E-value=0 Score=456.18 Aligned_cols=221 Identities=26% Similarity=0.364 Sum_probs=184.9
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 911799999999998543367200-25687536677776644445644555444444455761215775-5211232236
Q gi|254780374|r 1 MYRYSFIVLCYSSLLFGCHSSISE-ITGIPQMSPMGSSLDENNRMPFLGIDFKNSDSTKKSYSLWRDSH-AALFKDSRAL 78 (238)
Q Consensus 1 M~r~~l~~l~~~~lL~GCas~~~~-~~~~p~~tp~~~~~~~~~~~p~~~~~~~~~~~~~~~gSL~~~~~-~~lf~D~RA~ 78 (238)
T Consensus 1 M~r~~l~~~~--l~L~gCa~~~~~p~~~~p~------------~aP~~p--~~~~~~~~~~GSi~~~~~~~~lf~D~RA~ 64 (224)
T PRK12698 1 MARYILLALA--LLLAGCSSTPKKPIADDPY------------YAPVYP--EAPPTKIAATGSIFQDSQANSLYSDIKAH 64 (224)
T ss_pred CHHHHHHHHH--HHHHCCCCCCCCCCCCCCC------------CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9779999999--9983656889888888988------------678679--98876669997402588777542352104
Q ss_pred CCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHEECEEEEEEEEEEEE
Q ss_conf 76876999997241010000122234565445554333455445566655465555543211000000014899999999
Q gi|254780374|r 79 NVGDILTVDIRIDDQAVFDNQTGRSRNNSLHRKLSGGFSLFGQQTPQMNGNLNYDGGGASSGKGSISRAEKLNLLIAAIV 158 (238)
Q Consensus 79 ~VGDIiTV~i~E~~~a~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~l~~~isa~V 158 (238)
T Consensus 65 ~VGDIvTV~i~E~~~A~~s~~t~~~r~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~f~G~G~~~~s~~ltgtIta~V 143 (224)
T PRK12698 65 KVGDIITVVLKESTQAKKSANNEIKKGSDLSLDPIYAGGSNVSIG-GVPLDLGYKDSMNTKRESDADQSNSLSGSISANV 143 (224)
T ss_pred CCCCEEEEEEEECCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCEECCCEEEEEEEEEE
T ss_conf 599879999987043321146400344553436652366432357-7654344456653456330101024899999999
Q ss_pred EEECCCCCEEEEEEEEEEEECCEEEEEEEEEECHHHCCCCCEEEHHEEEEEEEEEECEEEECCCCCCCHHHHHHH-HHCC
Q ss_conf 998079728997887798418879999997984776789973824205543999802033123348666899999-8558
Q gi|254780374|r 159 TAILENGNLIISGSQEVRVNDEIRSLNVTGIVRPQDVDAHNSVSYDKIAEARISYGGKGRTTELLRPPIGHQLIE-NLSP 237 (238)
Q Consensus 159 ~~VlpNGnL~I~G~k~i~vn~e~~~i~isGiVRp~DI~~~NtV~S~~iAda~I~y~g~G~~~d~~~~gwl~r~~~-~i~P 237 (238)
T Consensus 144 ~~VlpNGNL~I~G~k~i~vN~~~e~i~~sGvVRP~DI~~~NtV~S~~IAdArI~Y~G~G~l~d~q~~GWl~r~f~~~~wP 223 (224)
T PRK12698 144 MQVLPNGNLVIRGEKWISINNGDEFIRLTGIVRSQDITPDNTIDSTRVANARIQYSGTGTFADAQKVGWLSQFFMSDWWP 223 (224)
T ss_pred EEECCCCCEEEEEEEEEEECCCEEEEEEEEEECHHHCCCCCEECCCEEEEEEEEECCEEEECCCCCCCHHHHHHCCCCCC
T ss_conf 99866980999998999988987999999999878889998697002243799983224126332448889976305699
Q ss_pred C
Q ss_conf 9
Q gi|254780374|r 238 L 238 (238)
Q Consensus 238 l 238 (238)
T Consensus 224 F 224 (224)
T PRK12698 224 F 224 (224)
T ss_pred C
T ss_conf 9